Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 1.8e-39 165.6 91 100.0
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 3.5e-32 141.4 127 69.3
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 5.1e-31 137.5 133 66.2
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 5.3e-28 127.5 121 66.9
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 3.4e-27 124.8 131 61.8
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 4.5e-27 124.4 131 60.3
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 4.5e-27 124.4 131 60.3
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 4.5e-27 124.4 131 60.3
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 1.7e-26 122.5 131 60.3
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.7e-26 122.5 131 60.3
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 1.4e-25 119.4 131 59.5
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 1.2e-24 116.3 67 94.0
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 2.1e-24 115.5 131 58.0
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 6.0e-24 114.0 131 58.8
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.0e-23 113.2 132 57.6
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.3e-23 112.8 131 55.0
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 5.1e-23 110.9 131 55.7
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 2.5e-22 108.6 131 55.7
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.0e-18 96.7 131 54.2
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.6e-16 89.4 75 58.7
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 3.0e-15 85.1 77 55.8
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 5.1e-15 84.3 77 58.4
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 5.1e-15 84.3 81 56.8
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 4.3e-14 81.3 81 54.3
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 1.3e-13 79.7 77 51.9
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.3e-13 79.7 77 55.8
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 2.2e-13 79.0 77 53.2
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.8e-13 78.6 77 51.9
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 2.8e-13 78.6 77 51.9
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 2.8e-13 78.6 74 55.4
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 4.8e-13 77.8 77 54.5
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 4.8e-13 77.8 77 50.6
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 6.3e-13 77.4 73 52.1
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 8.2e-13 77.0 77 50.6
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 1.4e-12 76.3 73 53.4
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.8e-12 75.9 72 54.2
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.8e-12 75.9 77 51.9
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.8e-12 75.9 77 50.6
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 2.4e-12 75.5 70 52.9
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 2.4e-12 75.5 70 52.9
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.4e-12 75.5 67 59.7
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.4e-12 75.5 67 59.7
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 3.1e-12 75.1 77 48.1
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 3.1e-12 75.1 71 57.7
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 3.1e-12 75.1 73 49.3
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 4.1e-12 74.7 131 38.9
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 6.9e-12 73.9 71 56.3
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 6.9e-12 73.9 71 56.3
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 9.1e-12 73.6 67 58.2
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 9.1e-12 73.6 74 52.7
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 9.1e-12 73.6 74 52.7
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.2e-11 73.2 73 54.8
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.6e-11 72.0 64 56.2
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 2.6e-11 72.0 75 46.7
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 3.4e-11 71.6 72 51.4
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 4.5e-11 71.2 67 53.7
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 4.5e-11 71.2 71 54.9
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 4.5e-11 71.2 67 50.7
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 4.5e-11 71.2 63 52.4
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 4.5e-11 71.2 70 50.0
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.9e-11 70.9 77 42.9
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 5.9e-11 70.9 67 55.2
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 7.7e-11 70.5 73 53.4
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 7.7e-11 70.5 70 55.7
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 7.7e-11 70.5 70 50.0
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 7.7e-11 70.5 129 37.2
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 7.7e-11 70.5 71 45.1
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.3e-10 69.7 129 37.2
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.3e-10 69.7 129 37.2
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.7e-10 69.3 71 52.1
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 5.0e-10 67.8 70 50.0
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 8.5e-10 67.0 62 56.5
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 1.1e-09 66.6 71 52.1
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.1e-09 66.6 77 41.6
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 1.4e-09 66.2 77 42.9
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 1.9e-09 65.9 71 46.5
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.9e-09 65.9 73 45.2
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.9e-09 65.9 67 49.3
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 1.9e-09 65.9 60 50.0
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 2.5e-09 65.5 67 50.7
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 2.5e-09 65.5 68 47.1
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 3.2e-09 65.1 81 43.2
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 7.2e-09 63.9 70 47.1
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.6e-08 62.8 73 42.5
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 2.1e-08 62.4 75 40.0
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 2.1e-08 62.4 75 42.7
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 2.1e-08 62.4 72 41.7
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.7e-08 62.0 72 44.4
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 3.6e-08 61.6 75 42.7
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 4.7e-08 61.2 77 42.9
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 4.7e-08 61.2 73 46.6
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.7e-08 61.2 71 43.7
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 6.1e-08 60.8 70 48.6
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.3e-07 58.9 73 43.8
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 2.3e-07 58.9 71 43.7
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 6.7e-07 57.4 61 45.9
AL6G20030 Arabidopsis lyrata HOM05D001505 ORTHO05D013453 1.5e-06 56.2 33 90.9
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 2.6e-06 55.5 78 39.7
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 2.6e-06 55.5 82 39.0
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 3.3e-06 55.1 69 46.4


User provided reference genes

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