Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p02530 Brassica napus HOM05D004110 ORTHO05D021644 3.3e-47 191.4 100 100.0
C04p11270 Brassica napus HOM05D004110 ORTHO05D021644 1.2e-44 183.0 100 96.0
BolC4t22766H Brassica oleracea HOM05D004110 ORTHO05D021644 1.2e-44 183.0 100 96.0
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 1.5e-15 86.3 49 91.8
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 1.5e-15 86.3 49 91.8
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 1.5e-15 86.3 49 91.8
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 1.5e-15 86.3 49 91.8
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 4.3e-15 84.7 53 83.0
BolC4t22780H Brassica oleracea HOM05D001754 ORTHO05D021644 1.6e-14 82.8 43 97.7
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 6.9e-13 77.4 49 81.6
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 2.0e-12 75.9 49 81.6
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 2.6e-12 75.5 49 79.6
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 4.5e-12 74.7 49 77.6
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 7.6e-12 73.9 50 72.0
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 2.2e-11 72.4 49 75.5
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 6.5e-11 70.9 49 79.6
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 1.8e-08 62.8 49 61.2
A06p37340 Brassica napus HOM05D001754 ORTHO05D001839 2.3e-08 62.4 38 89.5
BraA06t26656Z Brassica rapa HOM05D001754 ORTHO05D001839 2.3e-08 62.4 38 89.5
BcaC07g36804 Brassica carinata HOM05D004110 ORTHO05D021644 3.0e-08 62.0 32 96.9
A02p38760 Brassica napus HOM05D001754 ORTHO05D001839 3.9e-08 61.6 40 82.5
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 3.9e-08 61.6 78 48.7
A02p38880 Brassica napus HOM05D001754 ORTHO05D021644 6.7e-08 60.8 40 82.5
Nitab4.5_0002433g0050 Nicotiana tabacum HOM05D001754 ORTHO05D001839 2.5e-07 58.9 38 78.9
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 3.3e-07 58.5 49 59.2
AL6G39140 Arabidopsis lyrata HOM05D001754 ORTHO05D001839 4.3e-07 58.2 40 85.0
AT5G27770 Arabidopsis thaliana HOM05D001754 ORTHO05D001839 4.3e-07 58.2 40 85.0
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 4.3e-07 58.2 78 46.2
BolC2t11895H Brassica oleracea HOM05D001754 ORTHO05D001839 5.7e-07 57.8 40 77.5
CARHR186280 Cardamine hirsuta HOM05D001754 ORTHO05D001839 5.7e-07 57.8 40 85.0
Thhalv10005133m.g Eutrema salsugineum HOM05D001754 ORTHO05D001839 7.4e-07 57.4 40 85.0
Gohir.A11G268600 Gossypium hirsutum HOM05D001754 ORTHO05D001839 7.4e-07 57.4 38 78.9
Gorai.007G300700 Gossypium raimondii HOM05D001754 ORTHO05D001839 7.4e-07 57.4 38 78.9
C02p58290 Brassica napus HOM05D001754 ORTHO05D001839 9.6e-07 57.0 40 75.0
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 9.6e-07 57.0 50 60.0
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 9.6e-07 57.0 50 60.0
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 9.6e-07 57.0 50 60.0
Sp2g20930 Schrenkiella parvula HOM05D001754 ORTHO05D001839 9.6e-07 57.0 35 88.6
AL3G16180 Arabidopsis lyrata HOM05D001754 ORTHO05D001839 1.3e-06 56.6 40 82.5
AT3G05560 Arabidopsis thaliana HOM05D001754 ORTHO05D001839 1.3e-06 56.6 40 82.5
BcaC03g17807 Brassica carinata HOM05D001754 ORTHO05D001839 1.3e-06 56.6 40 75.0
Carub.0003s0486 Capsella rubella HOM05D001754 ORTHO05D001839 1.3e-06 56.6 40 82.5
Carub.0006s2477 Capsella rubella HOM05D001754 ORTHO05D001839 1.3e-06 56.6 40 82.5
Sp3g04410 Schrenkiella parvula HOM05D001754 ORTHO05D001839 1.3e-06 56.6 40 82.5
BraA02t08852Z Brassica rapa HOM05D001754 ORTHO05D001839 1.6e-06 56.2 35 74.3
Aa31LG5G15810 Aethionema arabicum HOM05D001754 ORTHO05D001839 2.1e-06 55.8 40 82.5
BcaC03g17806 Brassica carinata HOM05D001754 ORTHO05D001839 2.1e-06 55.8 37 78.4
C07p41130 Brassica napus HOM05D001754 ORTHO05D001839 2.8e-06 55.5 40 82.5
BolC7t44641H Brassica oleracea HOM05D001754 ORTHO05D001839 2.8e-06 55.5 40 82.5
Thhalv10021770m.g Eutrema salsugineum HOM05D001754 ORTHO05D001839 2.8e-06 55.5 40 80.0
Medtr1g083430 Medicago truncatula HOM05D001754 ORTHO05D001839 2.8e-06 55.5 35 74.3
Peaxi162Scf00071g00533 Petunia axillaris HOM05D001754 ORTHO05D001839 2.8e-06 55.5 38 71.1
Psat6g150880 Pisum sativum HOM05D001754 ORTHO05D001839 2.8e-06 55.5 35 74.3
SalBow2G3410 Salvia bowleyana HOM05D001754 ORTHO05D001839 2.8e-06 55.5 35 80.0
TPR.G17719 Trifolium pratense HOM05D001754 ORTHO05D001839 2.8e-06 55.5 35 74.3
BcaB04g19257 Brassica carinata HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
BcaB04g21443 Brassica carinata HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
BcaC03g17322 Brassica carinata HOM05D001754 ORTHO05D032245 3.7e-06 55.1 40 80.0
BcaC05g30111 Brassica carinata HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
BcaC05g30158 Brassica carinata HOM05D001999 ORTHO05D001994 3.7e-06 55.1 40 80.0
BcaC09g47838 Brassica carinata HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
A03p34200 Brassica napus HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
C02p52720 Brassica napus HOM05D001754 ORTHO05D032245 3.7e-06 55.1 40 80.0
C03p41590 Brassica napus HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
C05p61670 Brassica napus HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
BolC1t05689H Brassica oleracea HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
BolC2t11350H Brassica oleracea HOM05D001754 ORTHO05D032245 3.7e-06 55.1 40 80.0
BolC3t16440H Brassica oleracea HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
BolC5t34825H Brassica oleracea HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
BraA01t04477Z Brassica rapa HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
BraA03t12594Z Brassica rapa HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
BraA05t22961Z Brassica rapa HOM05D001754 ORTHO05D001839 3.7e-06 55.1 40 80.0
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 3.7e-06 55.1 48 58.3
Nitab4.5_0001879g0120 Nicotiana tabacum HOM05D001754 ORTHO05D001839 6.2e-06 54.3 40 75.0
Ca_10142_v3 Cicer arietinum L. HOM05D001754 ORTHO05D001839 8.2e-06 53.9 35 74.3
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 8.2e-06 53.9 49 55.1
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 8.2e-06 53.9 49 57.1
SGA_v2.0_scaffold1G00363 Striga asiatica HOM05D001754 ORTHO05D001839 8.2e-06 53.9 34 79.4


User provided reference genes

Program Settings