Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p02520 Brassica napus HOM05D000621 ORTHO05D000421 1.5e-36 155.6 74 100.0
BolC8t47048H Brassica oleracea HOM05D000621 ORTHO05D000421 1.5e-36 155.6 74 100.0
Sp1g05130 Schrenkiella parvula HOM05D000621 ORTHO05D000421 1.2e-25 119.4 91 69.2
A09p67030 Brassica napus HOM05D000262 ORTHO05D000300 2.0e-25 118.6 90 68.9
BcaC07g42070 Brassica carinata HOM05D000621 ORTHO05D000421 1.7e-24 115.5 90 67.8
BraA09t42037Z Brassica rapa HOM05D000262 ORTHO05D000300 1.7e-24 115.5 90 66.7
Thhalv10009453m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 3.8e-24 114.4 91 67.0
C08p51290 Brassica napus HOM05D000262 ORTHO05D000300 4.9e-24 114.0 90 66.7
BolC8t52655H Brassica oleracea HOM05D000262 ORTHO05D000300 4.9e-24 114.0 90 66.7
BcaC07g36806 Brassica carinata HOM05D000621 ORTHO05D000421 1.3e-19 99.4 57 84.2
C08p02500 Brassica napus HOM05D000621 ORTHO05D000421 1.3e-19 99.4 57 84.2
C08p02550 Brassica napus HOM05D000621 ORTHO05D000421 1.3e-19 99.4 57 84.2
AL1G16350 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.4e-18 95.9 89 60.7
Carub.0001s0570 Capsella rubella HOM05D000621 ORTHO05D000421 6.9e-18 93.6 92 57.6
BcaB03g13421 Brassica carinata HOM05D000621 ORTHO05D000421 7.6e-17 90.1 95 51.6
THA.LOC104800847 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 1.3e-16 89.4 89 56.2
CARHR005900 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.1e-15 86.3 89 55.1
AT1G06340 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 2.4e-15 85.1 89 53.9
CARHR005960 Cardamine hirsuta HOM05D000621 ORTHO05D000421 2.4e-15 85.1 90 54.4
Aa31LG1G7360 Aethionema arabicum HOM05D000621 ORTHO05D000421 3.2e-15 84.7 88 52.3
Potri.009G151200 Populus trichocarpa HOM05D000621 ORTHO05D000421 1.6e-14 82.4 88 50.0
TWI63G0878 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 7.9e-14 80.1 87 47.1
Gohir.A13G013800 Gossypium hirsutum HOM05D000621 ORTHO05D000421 1.3e-13 79.3 94 46.8
Gohir.D13G014900 Gossypium hirsutum HOM05D000621 ORTHO05D000421 1.3e-13 79.3 94 46.8
Gohir.D13G015000 Gossypium hirsutum HOM05D000621 ORTHO05D000421 1.3e-13 79.3 94 46.8
Gorai.013G016200 Gossypium raimondii HOM05D000621 ORTHO05D000421 1.3e-13 79.3 94 46.8
Gorai.013G016500 Gossypium raimondii HOM05D000621 ORTHO05D000421 1.3e-13 79.3 94 46.8
QL02p093988 Quercus lobata HOM05D000621 ORTHO05D000421 2.3e-13 78.6 86 52.3
Duzib128G0876 Durio zibethinus HOM05D000621 ORTHO05D000421 5.1e-13 77.4 93 48.4
Gohir.A13G013700 Gossypium hirsutum HOM05D000621 ORTHO05D000421 8.7e-13 76.6 94 44.7
QL08p041697 Quercus lobata HOM05D000621 ORTHO05D000421 8.7e-13 76.6 85 50.6
Medtr4g079830 Medicago truncatula HOM05D000621 ORTHO05D000421 1.5e-12 75.9 83 48.2
Cfa007381 Carpinus fangiana HOM05D000621 ORTHO05D000421 1.9e-12 75.5 86 47.7
Haze_14728 Corylus avellana HOM05D000621 ORTHO05D000421 2.5e-12 75.1 85 48.2
FvH4_6g05270 Fragaria vesca HOM05D000621 ORTHO05D000421 2.5e-12 75.1 86 47.7
Gorai.013G016000 Gossypium raimondii HOM05D000621 ORTHO05D000421 3.3e-12 74.7 92 42.4
QL08p041642 Quercus lobata HOM05D000621 ORTHO05D000421 3.3e-12 74.7 86 50.0
QL08p041687 Quercus lobata HOM05D000621 ORTHO05D000421 3.3e-12 74.7 86 50.0
COL.COLO4_14820 Corchorus olitorius HOM05D000621 ORTHO05D000421 4.3e-12 74.3 93 45.2
Gohir.D13G014750 Gossypium hirsutum HOM05D000621 ORTHO05D000421 4.3e-12 74.3 91 41.8
Manes.09G128200 Manihot esculenta HOM05D000621 ORTHO05D000421 5.6e-12 73.9 90 46.7
COL.COLO4_15144 Corchorus olitorius HOM05D000621 ORTHO05D000421 7.4e-12 73.6 92 46.7
Thecc.05G041100 Theobroma cacao HOM05D000621 ORTHO05D000421 7.4e-12 73.6 92 45.7
Ca_18110_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 1.3e-11 72.8 88 42.0
Ca_18874_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 1.3e-11 72.8 88 42.0
Ca_28221_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 1.3e-11 72.8 88 42.0
Dinv08798 Davidia involucrata HOM05D000621 ORTHO05D000421 1.3e-11 72.8 86 47.7
Cfa023334 Carpinus fangiana HOM05D000621 ORTHO05D000421 1.6e-11 72.4 86 48.8
QL09p005700 Quercus lobata HOM05D000621 ORTHO05D000421 1.6e-11 72.4 86 47.7
Peaxi162Scf00469g00022 Petunia axillaris HOM05D000621 ORTHO05D000421 2.1e-11 72.0 89 44.9
RcHm_v2.0_Chr3g0454011 Rosa chinensis HOM05D000621 ORTHO05D000421 2.1e-11 72.0 86 44.2
Aa31LG1G7370 Aethionema arabicum HOM05D000621 ORTHO05D000421 2.8e-11 71.6 89 47.2
Lalb_Chr01g0005991 Lupinus albus HOM05D000621 ORTHO05D000421 3.7e-11 71.2 87 46.0
FAN14G5271 Fragaria x ananassa HOM05D000621 ORTHO05D000421 4.8e-11 70.9 86 46.5
Medtr1g019680 Medicago truncatula HOM05D000621 ORTHO05D000421 1.1e-10 69.7 67 43.3
Lalb_Chr03g0029901 Lupinus albus HOM05D000621 ORTHO05D000421 1.4e-10 69.3 87 44.8
Medtr5g089140 Medicago truncatula HOM05D000621 ORTHO05D000421 1.4e-10 69.3 87 39.1
CSS0007912 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 1.8e-10 68.9 86 43.0
Haze_13372 Corylus avellana HOM05D000621 ORTHO05D000421 2.4e-10 68.6 87 46.0
Prupe.6G314400 Prunus persica HOM05D000621 ORTHO05D000421 2.4e-10 68.6 91 46.2
Ca_18882_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 3.1e-10 68.2 89 41.6
FvH4_6g14470 Fragaria vesca HOM05D000621 ORTHO05D000421 3.1e-10 68.2 93 39.8
Peaxi162Scf00028g00043 Petunia axillaris HOM05D000621 ORTHO05D000421 4.0e-10 67.8 88 45.5
Peaxi162Scf01736g00001 Petunia axillaris HOM05D000621 ORTHO05D000421 4.0e-10 67.8 88 45.5
Psat7g165560 Pisum sativum HOM05D000621 ORTHO05D000421 4.0e-10 67.8 83 41.0
Actinidia35214 Actinidia chinensis HOM05D000621 ORTHO05D000421 5.3e-10 67.4 86 41.9
CANSAT11G1282 Cannabis sativa HOM05D000621 ORTHO05D000421 5.3e-10 67.4 89 42.7
Nitab4.5_0001095g0120 Nicotiana tabacum HOM05D000621 ORTHO05D000421 5.3e-10 67.4 86 43.0
Nitab4.5_0010988g0010 Nicotiana tabacum HOM05D000621 ORTHO05D000421 5.3e-10 67.4 86 43.0
Peaxi162Scf00028g00416 Petunia axillaris HOM05D000621 ORTHO05D000421 5.3e-10 67.4 88 45.5
SGA_v2.0_scaffold9G04815 Striga asiatica HOM05D000621 ORTHO05D000421 5.3e-10 67.4 86 41.9
CSS0036864 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 6.9e-10 67.0 89 43.8
FAN05G3124 Fragaria x ananassa HOM05D000621 ORTHO05D000421 6.9e-10 67.0 90 40.0
Phvul.011G130600 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 6.9e-10 67.0 86 41.9
Phvul.011G130700 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 6.9e-10 67.0 86 41.9
Psat7g165520 Pisum sativum HOM05D000621 ORTHO05D000421 6.9e-10 67.0 83 39.8
Medtr5g089250 Medicago truncatula HOM05D000621 ORTHO05D000421 9.0e-10 66.6 87 37.9
Medtr3g065560 Medicago truncatula HOM05D000621 ORTHO05D000421 1.2e-09 66.2 83 41.0
CAN.G456.16 Capsicum annuum HOM05D000621 ORTHO05D000421 1.5e-09 65.9 88 44.3
MD04G1194400 Malus domestica HOM05D000621 ORTHO05D000421 1.5e-09 65.9 89 44.9
FAN14G2616 Fragaria x ananassa HOM05D000621 ORTHO05D000421 2.0e-09 65.5 93 38.7
Thecc.05G041200 Theobroma cacao HOM05D000621 ORTHO05D000421 2.6e-09 65.1 92 41.3
Aqoxy6G00212 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 3.4e-09 64.7 86 41.9
CAN.G456.2 Capsicum annuum HOM05D000621 ORTHO05D000421 4.5e-09 64.3 86 38.4
Glyma.12G127600 Glycine max HOM05D000621 ORTHO05D000421 4.5e-09 64.3 88 39.8
Solyc07g055040.1 Solanum lycopersicum HOM05D000621 ORTHO05D000421 4.5e-09 64.3 86 41.9
Sopen07g027170 Solanum pennellii HOM05D000621 ORTHO05D000421 4.5e-09 64.3 86 41.9
TPR.G22463 Trifolium pratense HOM05D000621 ORTHO05D000421 4.5e-09 64.3 83 38.6
VMungo1127G0414 Vigna mungo HOM05D000621 ORTHO05D000421 4.5e-09 64.3 86 40.7
Ca_02028_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 5.8e-09 63.9 87 40.2
FAN09G0043 Fragaria x ananassa HOM05D000621 ORTHO05D000421 5.8e-09 63.9 90 38.9
Medtr4g079980 Medicago truncatula HOM05D000621 ORTHO05D000421 5.8e-09 63.9 87 37.9
Psat7g252320 Pisum sativum HOM05D000621 ORTHO05D000421 5.8e-09 63.9 80 41.2
RcHm_v2.0_Chr6g0290541 Rosa chinensis HOM05D000621 ORTHO05D000421 5.8e-09 63.9 86 43.0
Aa31LG1G7340 Aethionema arabicum HOM05D000621 ORTHO05D000421 7.6e-09 63.5 88 43.2
DCAR_030426 Daucus carota HOM05D000621 ORTHO05D000421 7.6e-09 63.5 86 41.9
Glyma.06G277700 Glycine max HOM05D000621 ORTHO05D000421 7.6e-09 63.5 88 38.6
Lj8C149T18 Lonicera japonica HOM05D000621 ORTHO05D000421 7.6e-09 63.5 88 37.5
Medtr4g127390 Medicago truncatula HOM05D000621 ORTHO05D000421 1.0e-08 63.2 81 40.7
Nitab4.5_0012213g0030 Nicotiana tabacum HOM05D000621 ORTHO05D000421 1.0e-08 63.2 90 40.0
Solyc03g120030.1 Solanum lycopersicum HOM05D000621 ORTHO05D000421 1.0e-08 63.2 89 41.6
Medtr5g089220 Medicago truncatula HOM05D000621 ORTHO05D000421 1.3e-08 62.8 87 35.6
VMungo0251G1194 Vigna mungo HOM05D000621 ORTHO05D000421 1.3e-08 62.8 86 39.5
PGSC0003DMG402020444 Solanum tuberosum HOM05D000621 ORTHO05D000421 1.7e-08 62.4 86 41.9
PGSC0003DMG400044084 Solanum tuberosum HOM05D000621 ORTHO05D000421 2.2e-08 62.0 90 41.1
Nn1g04409 Nelumbo nucifera HOM05D000621 ORTHO05D000421 2.9e-08 61.6 86 43.0
Ah.01g015760 Amaranthus hybridus HOM05D000621 ORTHO05D000421 3.8e-08 61.2 89 38.2
CAN.G65.66 Capsicum annuum HOM05D000621 ORTHO05D000421 3.8e-08 61.2 90 41.1
Phvul.002G204200 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 3.8e-08 61.2 86 40.7
Rhsim04G0025500 Rhododendron simsii HOM05D000621 ORTHO05D000421 4.9e-08 60.8 80 41.2
Sopen06g028510 Solanum pennellii HOM05D000621 ORTHO05D000421 6.5e-08 60.5 90 40.0
ATR0691G208 Amborella trichopoda HOM05D000621 ORTHO05D000421 8.4e-08 60.1 84 39.3
Aqoxy1G02364 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 8.4e-08 60.1 87 41.4
Solyc06g072450.1 Solanum lycopersicum HOM05D000621 ORTHO05D000421 8.4e-08 60.1 90 38.9
CAN.G438.86 Capsicum annuum HOM05D000621 ORTHO05D000421 1.1e-07 59.7 88 40.9
Dinv14988 Davidia involucrata HOM05D000621 ORTHO05D000421 1.1e-07 59.7 85 40.0
Prupe.6G314500 Prunus persica HOM05D000621 ORTHO05D000421 1.1e-07 59.7 86 45.3
Medtr2g011700 Medicago truncatula HOM05D000621 ORTHO05D000421 1.4e-07 59.3 74 40.5
PGSC0003DMG400027055 Solanum tuberosum HOM05D000621 ORTHO05D000421 1.4e-07 59.3 90 40.0
Aqoxy1G02065 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 1.9e-07 58.9 87 32.2
PGSC0003DMG400005608 Solanum tuberosum HOM05D000621 ORTHO05D000421 1.9e-07 58.9 89 38.2
TPR.G5408 Trifolium pratense HOM05D000621 ORTHO05D000421 1.9e-07 58.9 87 36.8
FAN02G1176 Fragaria x ananassa HOM05D000621 ORTHO05D000421 2.5e-07 58.5 87 39.1
Cpa.g.c45528 Carica papaya HOM05D000621 ORTHO05D000421 3.2e-07 58.2 88 38.6
Psat0s3389g0040 Pisum sativum HOM05D000621 ORTHO05D000421 3.2e-07 58.2 83 38.6
TWI39G0827 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 3.2e-07 58.2 80 43.8
FAN14G2097 Fragaria x ananassa HOM05D000621 ORTHO05D000421 4.2e-07 57.8 52 53.8
Lsat_1_v5_gn_6_116160 Lactuca sativa HOM05D000621 ORTHO05D000421 4.2e-07 57.8 88 36.4
Lsat_1_v5_gn_8_139620 Lactuca sativa HOM05D000621 ORTHO05D000421 4.2e-07 57.8 86 36.0
Thecc.06G170800 Theobroma cacao HOM05D000621 ORTHO05D000421 4.2e-07 57.8 87 41.4
CAN.G65.95 Capsicum annuum HOM05D000621 ORTHO05D000421 5.5e-07 57.4 90 37.8
Ciclev10023940m.g Citrus clementina HOM05D000621 ORTHO05D000421 5.5e-07 57.4 83 39.8
MD07G1304600 Malus domestica HOM05D000621 ORTHO05D000421 5.5e-07 57.4 88 35.2
Prupe.2G323100 Prunus persica HOM05D000621 ORTHO05D000421 5.5e-07 57.4 88 34.1
MD01G1232500 Malus domestica HOM05D000621 ORTHO05D000421 7.1e-07 57.0 88 35.2
AagrBONN_evm.TU.Sc2ySwM_228.927__928 Anthoceros agrestis HOM05D000621 ORTHO05D000421 1.2e-06 56.2 84 38.1
Peaxi162Scf00227g00082 Petunia axillaris HOM05D000621 ORTHO05D000421 1.2e-06 56.2 89 40.4
Sopen06g022050 Solanum pennellii HOM05D000621 ORTHO05D000421 1.6e-06 55.8 89 40.4
Eucgr.J01526 Eucalyptus grandis HOM05D000621 ORTHO05D000421 2.1e-06 55.5 88 38.6
CANSAT21G1796 Cannabis sativa HOM05D000621 ORTHO05D000421 2.7e-06 55.1 89 34.8
AUR62000424 Chenopodium quinoa HOM05D000621 ORTHO05D000421 2.7e-06 55.1 86 38.4
CAN.G194.21 Capsicum annuum HOM05D000621 ORTHO05D000421 3.5e-06 54.7 90 38.9
CAN.G65.67 Capsicum annuum HOM05D000621 ORTHO05D000421 3.5e-06 54.7 90 36.7
CARHR009280 Cardamine hirsuta HOM05D000621 ORTHO05D000421 3.5e-06 54.7 87 40.2
PSO500G0015 Papaver somniferum HOM05D000621 ORTHO05D000421 3.5e-06 54.7 89 36.0
PSO675G4312 Papaver somniferum HOM05D000621 ORTHO05D000421 3.5e-06 54.7 89 36.0
Peaxi162Scf00770g00127 Petunia axillaris HOM05D000621 ORTHO05D000421 3.5e-06 54.7 87 37.9
Psat0s4293g0040 Pisum sativum HOM05D000621 ORTHO05D000421 3.5e-06 54.7 88 37.5
QL05p047087 Quercus lobata HOM05D000621 ORTHO05D000421 3.5e-06 54.7 80 37.5
PGSC0003DMG400027076 Solanum tuberosum HOM05D000621 ORTHO05D000421 3.5e-06 54.7 83 38.6
AUR62006770 Chenopodium quinoa HOM05D000621 ORTHO05D000421 4.6e-06 54.3 88 37.5
AUR62038938 Chenopodium quinoa HOM05D000621 ORTHO05D000421 4.6e-06 54.3 89 37.1
Medtr1g084210 Medicago truncatula HOM05D000621 ORTHO05D000421 4.6e-06 54.3 85 38.8
Psat6g154280 Pisum sativum HOM05D000621 ORTHO05D000421 4.6e-06 54.3 86 36.0
Sopen06g028480 Solanum pennellii HOM05D000621 ORTHO05D000421 4.6e-06 54.3 89 39.3
Zm00001eb354850 Zea mays HOM05D000621 ORTHO05D000421 4.6e-06 54.3 86 37.2
Cc05_g11190 Coffea canephora HOM05D000621 ORTHO05D000421 6.0e-06 53.9 84 38.1
FvH4_2g23230 Fragaria vesca HOM05D000621 ORTHO05D000421 6.0e-06 53.9 88 37.5
FAN20G0060 Fragaria x ananassa HOM05D000621 ORTHO05D000421 6.0e-06 53.9 88 37.5
FAN24G2994 Fragaria x ananassa HOM05D000621 ORTHO05D000421 6.0e-06 53.9 88 37.5
Psat6g153280 Pisum sativum HOM05D000621 ORTHO05D000421 6.0e-06 53.9 86 37.2
PGSC0003DMG400027057 Solanum tuberosum HOM05D000621 ORTHO05D000421 6.0e-06 53.9 90 37.8
Cpa.g.sc52.172 Carica papaya HOM05D000621 ORTHO05D000421 7.9e-06 53.5 88 37.5
PGSC0003DMG400026947 Solanum tuberosum HOM05D000621 ORTHO05D000421 7.9e-06 53.5 90 36.7


User provided reference genes

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