Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p02480 Brassica napus HOM05D006335 ORTHO05D007617 1.6e-71 272.7 144 100.0
BcaC07g36801 Brassica carinata HOM05D006335 ORTHO05D007617 2.3e-70 268.9 144 98.6
BolC8t47040H Brassica oleracea HOM05D006335 ORTHO05D007617 1.1e-67 260.0 144 97.9
BraA08t35509Z Brassica rapa HOM05D006335 ORTHO05D007617 2.4e-67 258.8 144 97.2
A08p36030 Brassica napus HOM05D006335 ORTHO05D007617 2.7e-66 255.4 144 95.8
BcaB03g13422 Brassica carinata HOM05D006335 ORTHO05D007617 5.9e-58 227.6 146 88.4
BcaC07g42074 Brassica carinata HOM05D006335 ORTHO05D007617 8.0e-47 190.7 127 81.1
Thhalv10009758m.g Eutrema salsugineum HOM05D006335 ORTHO05D007617 1.8e-46 189.5 128 78.1
C08p51300 Brassica napus HOM05D006335 ORTHO05D007617 7.5e-45 184.1 128 77.3
BolC8t52656H Brassica oleracea HOM05D006335 ORTHO05D007617 7.5e-45 184.1 128 77.3
Sp1g05110 Schrenkiella parvula HOM05D006335 ORTHO05D007617 2.2e-44 182.6 139 71.2
A09p67040 Brassica napus HOM05D006335 ORTHO05D007617 6.4e-44 181.0 125 78.4
BraA09t42038Z Brassica rapa HOM05D006335 ORTHO05D007617 6.4e-44 181.0 125 78.4
CARHR005880 Cardamine hirsuta HOM05D006335 ORTHO05D007617 3.9e-41 171.8 128 72.7
AT1G06320 Arabidopsis thaliana HOM05D006335 ORTHO05D007617 2.5e-40 169.1 131 70.2
AL1G16330 Arabidopsis lyrata HOM05D006335 ORTHO05D007617 2.6e-37 159.1 132 68.2
Carub.0001s0568 Capsella rubella HOM05D006335 ORTHO05D007617 1.6e-31 139.8 106 67.0
Aa31LG1G7320 Aethionema arabicum HOM05D006335 ORTHO05D007617 3.5e-26 122.1 138 51.4
Hma1.2p1_0178F.1_g078870 Hydrangea macrophylla HOM05D006335 ORTHO05D007617 8.7e-25 117.5 136 44.9
COL.COLO4_33572 Corchorus olitorius HOM05D006335 ORTHO05D007617 1.2e-21 107.1 116 45.7
QL08p041551 Quercus lobata HOM05D006335 ORTHO05D007617 2.6e-21 105.9 100 51.0
Cc05_g08270 Coffea canephora HOM05D006335 ORTHO05D007617 3.4e-21 105.5 106 48.1
BcaC07g42071 Brassica carinata HOM05D006335 ORTHO05D007617 2.2e-20 102.8 67 82.1
Duzib147G1311 Durio zibethinus HOM05D006335 ORTHO05D007617 4.9e-20 101.7 120 45.0
arahy.Tifrunner.gnm1.ann1.Y7YMH3 Arachis hypogaea HOM05D006335 ORTHO05D007617 8.4e-20 100.9 99 46.5
THA.LOC104816084 Tarenaya hassleriana HOM05D006335 ORTHO05D007617 8.4e-20 100.9 133 42.9
arahy.Tifrunner.gnm1.ann1.IJ2KIS Arachis hypogaea HOM05D006335 ORTHO05D007617 1.1e-19 100.5 99 46.5
Gohir.A09G001600 Gossypium hirsutum HOM05D006335 ORTHO05D007617 1.1e-19 100.5 124 45.2
Lalb_Chr01g0005971 Lupinus albus HOM05D006335 ORTHO05D007617 1.1e-19 100.5 100 47.0
Ca_18884_v3 Cicer arietinum L. HOM05D006335 ORTHO05D007617 1.9e-19 99.8 95 48.4
arahy.Tifrunner.gnm1.ann1.E7WT9K Arachis hypogaea HOM05D006335 ORTHO05D007617 3.2e-19 99.0 99 45.5
Psat7g165440 Pisum sativum HOM05D006335 ORTHO05D007617 7.1e-19 97.8 95 47.4
Actinidia04365 Actinidia chinensis HOM05D006335 ORTHO05D007617 1.6e-18 96.7 138 38.4
Manes.01G133300 Manihot esculenta HOM05D006335 ORTHO05D007617 1.6e-18 96.7 101 44.6
Psat7g165600 Pisum sativum HOM05D006335 ORTHO05D007617 2.1e-18 96.3 95 46.3
Sed0026533 Sechium edule HOM05D006335 ORTHO05D007617 2.7e-18 95.9 101 51.5
Medtr4g079460 Medicago truncatula HOM05D006335 ORTHO05D007617 3.5e-18 95.5 141 37.6
Sopen12g006210 Solanum pennellii HOM05D006335 ORTHO05D007617 3.5e-18 95.5 134 44.0
Solyc12g010850.1 Solanum lycopersicum HOM05D006335 ORTHO05D007617 4.6e-18 95.1 134 44.0
Thecc.01G149900 Theobroma cacao HOM05D006335 ORTHO05D007617 4.6e-18 95.1 117 45.3
Lj3g0002577 Lotus japonicus HOM05D006335 ORTHO05D007617 1.3e-17 93.6 99 44.4
TPR.G28309 Trifolium pratense HOM05D006335 ORTHO05D007617 1.3e-17 93.6 95 45.3
CiPaw.04G132900 Carya illinoinensis HOM05D006335 ORTHO05D007617 1.7e-17 93.2 127 41.7
Glyma.06G277900 Glycine max HOM05D006335 ORTHO05D007617 1.7e-17 93.2 112 41.1
Gorai.006G001500 Gossypium raimondii HOM05D006335 ORTHO05D007617 1.7e-17 93.2 124 42.7
Lj1A685T55 Lonicera japonica HOM05D006335 ORTHO05D007617 1.7e-17 93.2 106 44.3
Phvul.011G133700 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 3.0e-17 92.4 135 39.3
Eucgr.K01124 Eucalyptus grandis HOM05D006335 ORTHO05D007617 3.9e-17 92.0 130 38.5
Gohir.D09G001300 Gossypium hirsutum HOM05D006335 ORTHO05D007617 3.9e-17 92.0 124 41.9
Phvul.011G133000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 5.1e-17 91.7 135 39.3
Glyma.15G020200 Glycine max HOM05D006335 ORTHO05D007617 6.6e-17 91.3 112 40.2
Medtr4g079810 Medicago truncatula HOM05D006335 ORTHO05D007617 6.6e-17 91.3 145 35.9
TAR624G0615 Trochodendron aralioides HOM05D006335 ORTHO05D007617 8.7e-17 90.9 130 42.3
Glyma.06G279000 Glycine max HOM05D006335 ORTHO05D007617 1.9e-16 89.7 112 39.3
GSVIVG01034999001 Vitis vinifera HOM05D006335 ORTHO05D007617 2.5e-16 89.4 137 42.3
Aqoxy2G02728 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 3.3e-16 89.0 103 42.7
VMungo1127G1825 Vigna mungo HOM05D006335 ORTHO05D007617 4.3e-16 88.6 130 37.7
TAR626G0568 Trochodendron aralioides HOM05D006335 ORTHO05D007617 5.6e-16 88.2 140 38.6
TWI59G1087 Tripterygium wilfordii HOM05D006335 ORTHO05D007617 1.3e-15 87.0 102 43.1
RcHm_v2.0_Chr2g0129291 Rosa chinensis HOM05D006335 ORTHO05D007617 1.6e-15 86.7 100 40.0
RcHm_v2.0_Chr2g0129361 Rosa chinensis HOM05D006335 ORTHO05D007617 2.1e-15 86.3 111 37.8
CANSAT64G2990 Cannabis sativa HOM05D006335 ORTHO05D007617 3.6e-15 85.5 110 40.9
Phvul.011G131000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 4.8e-15 85.1 135 38.5
Prupe.3G117900 Prunus persica HOM05D006335 ORTHO05D007617 4.8e-15 85.1 103 39.8
FAN05G4039 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.1e-14 84.0 99 42.4
FAN09G0462 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.1e-14 84.0 99 41.4
Cpa.g.sc209.36 Carica papaya HOM05D006335 ORTHO05D007617 1.4e-14 83.6 145 35.2
FvH4_6g27220 Fragaria vesca HOM05D006335 ORTHO05D007617 1.4e-14 83.6 99 42.4
FAN14G0983 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.4e-14 83.6 99 42.4
Nitab4.5_0000537g0060 Nicotiana tabacum HOM05D006335 ORTHO05D007617 1.4e-14 83.6 113 41.6
FvH4_6g27231 Fragaria vesca HOM05D006335 ORTHO05D007617 3.1e-14 82.4 98 37.8
Nitab4.5_0008326g0020 Nicotiana tabacum HOM05D006335 ORTHO05D007617 9.0e-14 80.9 134 37.3
MD09G1238400 Malus domestica HOM05D006335 ORTHO05D007617 1.2e-13 80.5 115 38.3
Nn4g25571 Nelumbo nucifera HOM05D006335 ORTHO05D007617 1.5e-13 80.1 99 41.4
Sabra05G0153900 Salix brachista HOM05D006335 ORTHO05D007617 1.5e-13 80.1 119 33.6
Aqoxy1G02076 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 2.0e-13 79.7 135 36.3
Dinv15181 Davidia involucrata HOM05D006335 ORTHO05D007617 2.6e-13 79.3 99 44.4
VMungo1127G1181 Vigna mungo HOM05D006335 ORTHO05D007617 2.6e-13 79.3 143 34.3
SHI18965 Sapria himalayana HOM05D006335 ORTHO05D007617 7.6e-13 77.8 101 35.6
Hund07816 Selenicereus undatus HOM05D006335 ORTHO05D007617 9.9e-13 77.4 124 40.3
Potri.005G202500 Populus trichocarpa HOM05D006335 ORTHO05D007617 1.3e-12 77.0 108 38.0
Dinv15448 Davidia involucrata HOM05D006335 ORTHO05D007617 1.7e-12 76.6 132 37.9
PGR142G3040 Punica granatum HOM05D006335 ORTHO05D007617 1.7e-12 76.6 140 39.3
Thecc.04G299900 Theobroma cacao HOM05D006335 ORTHO05D007617 2.2e-12 76.3 146 32.9
Prupe.3G121400 Prunus persica HOM05D006335 ORTHO05D007617 2.9e-12 75.9 116 35.3
TAR633G2592 Trochodendron aralioides HOM05D006335 ORTHO05D007617 3.8e-12 75.5 144 35.4
AUR62038933 Chenopodium quinoa HOM05D006335 ORTHO05D007617 1.4e-11 73.6 140 35.0
AUR62039006 Chenopodium quinoa HOM05D006335 ORTHO05D007617 1.4e-11 73.6 140 35.7
Lsat_1_v5_gn_8_120600 Lactuca sativa HOM05D006335 ORTHO05D007617 1.4e-11 73.6 99 42.4
PGSC0003DMG400007858 Solanum tuberosum HOM05D006335 ORTHO05D007617 1.4e-11 73.6 134 38.1
arahy.Tifrunner.gnm1.ann1.DF2I7I Arachis hypogaea HOM05D006335 ORTHO05D007617 5.4e-11 71.6 99 37.4
MD08G1181200 Malus domestica HOM05D006335 ORTHO05D007617 5.4e-11 71.6 96 36.5
Sc05g0006750 Simmondsia chinensis HOM05D006335 ORTHO05D007617 7.1e-11 71.2 135 37.8
Os03g0308600 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 1.6e-10 70.1 117 35.0
RcHm_v2.0_Chr2g0129301 Rosa chinensis HOM05D006335 ORTHO05D007617 3.5e-10 68.9 111 34.2
Zm00001eb014800 Zea mays HOM05D006335 ORTHO05D007617 7.9e-10 67.8 132 34.1
EL10Ac3g05494 Beta vulgaris HOM05D006335 ORTHO05D007617 1.3e-09 67.0 134 32.8
ECA246G1597 Erigeron canadensis HOM05D006335 ORTHO05D007617 5.1e-09 65.1 99 38.4
Hund03123 Selenicereus undatus HOM05D006335 ORTHO05D007617 6.7e-09 64.7 134 35.8
COL.COLO4_34622 Corchorus olitorius HOM05D006335 ORTHO05D007617 1.9e-08 63.2 85 40.0
Zm00001eb014790 Zea mays HOM05D006335 ORTHO05D007617 1.9e-08 63.2 117 30.8
FAN14G0259 Fragaria x ananassa HOM05D006335 ORTHO05D007617 3.3e-08 62.4 72 38.9
Ciclev10016971m.g Citrus clementina HOM05D006335 ORTHO05D007617 7.4e-08 61.2 70 42.9
Os03g0308700 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 1.3e-07 60.5 148 32.4
ECA238G3583 Erigeron canadensis HOM05D006335 ORTHO05D007617 1.6e-07 60.1 71 45.1
HanXRQChr16g0530371 Helianthus annuus HOM05D006335 ORTHO05D007617 1.6e-07 60.1 76 43.4
vmacro14418 Vaccinium macrocarpon HOM05D000550 ORTHO05D000400 2.1e-07 59.7 94 37.2
PSO170G4547 Papaver somniferum HOM05D006335 ORTHO05D007617 1.4e-06 57.0 133 30.1
unitig_46.g18233 Utricularia gibba HOM05D006335 ORTHO05D007617 1.4e-06 57.0 115 30.4


User provided reference genes

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