Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 1.3e-219 766.1 405 100.0
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 2.1e-217 758.8 405 99.3
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 3.3e-207 724.9 408 95.8
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 1.6e-201 706.1 408 94.1
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 7.7e-196 687.2 405 91.6
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 7.3e-154 547.7 470 69.1
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 5.8e-151 538.1 471 69.4
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 9.9e-151 537.3 471 69.4
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 4.9e-150 535.0 467 68.3
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.2e-148 530.4 453 70.2
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 2.1e-148 529.6 477 68.3
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 3.5e-124 449.1 472 61.9
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 4.5e-103 379.0 484 53.5
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 1.0e-102 377.9 500 53.0
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.0e-102 377.9 469 55.9
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 5.0e-102 375.6 493 54.0
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 1.6e-100 370.5 487 53.2
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 7.9e-100 368.2 463 55.9
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 1.9e-98 363.6 465 55.3
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 2.2e-97 360.1 476 53.6
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.1e-96 357.8 501 51.7
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 3.4e-95 352.8 444 54.5
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 6.5e-94 348.6 500 50.6
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 1.0e-86 324.7 439 51.0
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 3.6e-84 316.2 429 51.3
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 2.3e-83 313.5 430 50.7
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 3.3e-82 309.7 433 50.8
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 4.4e-82 309.3 436 49.5
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 6.3e-81 305.4 426 50.5
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 9.1e-80 301.6 459 48.1
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 9.1e-80 301.6 433 49.9
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 1.2e-76 291.2 483 45.5
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 3.0e-75 286.6 476 44.5
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 9.2e-24 115.5 334 31.4
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 1.9e-21 107.8 276 31.9
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 6.2e-20 102.8 369 28.2
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 6.2e-20 102.8 375 28.3
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 2.4e-19 100.9 305 31.1
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 3.1e-19 100.5 241 33.6
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 7.6e-18 95.9 311 32.5
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 2.9e-17 94.0 221 30.3
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 2.9e-17 94.0 252 32.9
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 1.9e-16 91.3 224 33.5
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 6.0e-15 86.3 412 27.2
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 1.3e-14 85.1 390 27.4
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 2.3e-14 84.3 233 30.9
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 5.6e-13 79.7 309 33.3
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 2.8e-12 77.4 451 24.8
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 1.1e-11 75.5 212 34.4
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 1.2e-10 72.0 305 28.9
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 2.0e-10 71.2 484 24.4
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 2.9e-09 67.4 445 23.8
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 3.8e-09 67.0 279 29.7
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 2.4e-08 64.3 312 24.4
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 3.2e-08 63.9 349 27.2
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 2.1e-07 61.2 98 40.8
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 3.9e-06 57.0 222 25.7
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 5.1e-06 56.6 220 27.7


User provided reference genes

Program Settings