Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 3.1e-87 325.1 162 100.0
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 6.8e-87 323.9 162 99.4
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 3.4e-86 321.6 160 100.0
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 2.9e-85 318.5 163 98.2
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 9.3e-84 313.5 163 96.9
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 2.7e-83 312.0 168 94.0
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 2.2e-77 292.4 167 86.8
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 8.4e-77 290.4 160 90.0
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 2.4e-76 288.9 167 88.0
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 1.6e-75 286.2 159 88.7
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 1.6e-75 286.2 159 88.7
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 1.6e-75 286.2 159 88.7
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 1.6e-75 286.2 159 88.7
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 4.6e-75 284.6 166 84.9
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 1.3e-74 283.1 166 84.3
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 2.5e-73 278.9 166 84.9
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 3.3e-73 278.5 153 88.2
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 1.6e-72 276.2 153 86.9
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 6.2e-72 274.2 150 88.0
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 1.1e-65 253.4 162 76.5
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 1.1e-65 253.4 150 76.7
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 1.1e-63 246.9 153 75.2
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 6.9e-63 244.2 163 71.8
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 9.0e-63 243.8 147 76.9
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 1.2e-62 243.4 152 74.3
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 2.0e-62 242.7 201 65.2
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 2.6e-62 242.3 157 72.0
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 4.5e-62 241.5 139 78.4
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 4.5e-62 241.5 143 76.9
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 5.8e-62 241.1 137 79.6
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 5.8e-62 241.1 152 75.0
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.7e-61 239.6 150 74.0
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 1.7e-61 239.6 163 70.6
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.7e-61 239.6 139 78.4
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 1.7e-61 239.6 155 71.0
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 2.2e-61 239.2 156 72.4
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 2.2e-61 239.2 158 72.2
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 2.9e-61 238.8 138 78.3
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 2.9e-61 238.8 139 78.4
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 2.9e-61 238.8 139 78.4
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 2.9e-61 238.8 161 68.9
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 2.9e-61 238.8 153 71.2
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 3.8e-61 238.4 152 72.4
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 4.9e-61 238.0 147 72.8
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 4.9e-61 238.0 149 72.5
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 4.9e-61 238.0 149 73.8
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 4.9e-61 238.0 154 70.8
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 6.5e-61 237.7 148 71.6
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 6.5e-61 237.7 160 71.2
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 8.4e-61 237.3 147 71.4
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 1.4e-60 236.5 150 73.3
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 2.5e-60 235.7 174 65.5
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 2.5e-60 235.7 160 68.8
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 3.2e-60 235.3 152 71.1
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 3.2e-60 235.3 136 78.7
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 3.2e-60 235.3 160 68.8
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 3.2e-60 235.3 160 68.8
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 3.2e-60 235.3 149 71.8
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 3.2e-60 235.3 153 69.3
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 4.2e-60 235.0 150 73.3
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 5.5e-60 234.6 139 77.0
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 7.1e-60 234.2 154 70.1
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 7.1e-60 234.2 137 75.9
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.2e-59 233.4 160 67.5
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.2e-59 233.4 135 76.3
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 1.6e-59 233.0 159 68.6
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 2.1e-59 232.6 150 73.3
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 3.5e-59 231.9 168 66.1
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 3.5e-59 231.9 168 66.1
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 3.5e-59 231.9 151 70.9
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 3.5e-59 231.9 151 70.9
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 4.6e-59 231.5 150 70.0
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 6.0e-59 231.1 151 70.9
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 6.0e-59 231.1 137 77.4
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 6.0e-59 231.1 137 74.5
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 7.9e-59 230.7 163 65.6
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 1.0e-58 230.3 159 71.1
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 1.0e-58 230.3 148 70.3
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 1.0e-58 230.3 150 70.7
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 1.3e-58 229.9 153 69.9
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 1.3e-58 229.9 134 76.1
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 1.8e-58 229.6 153 68.0
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.0e-58 228.8 159 70.4
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 3.0e-58 228.8 160 66.9
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 3.9e-58 228.4 155 68.4
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 3.9e-58 228.4 150 70.0
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 6.7e-58 227.6 149 66.4
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 6.7e-58 227.6 153 68.6
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 8.7e-58 227.3 154 71.4
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 8.7e-58 227.3 159 69.8
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 8.7e-58 227.3 151 68.9
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 1.1e-57 226.9 148 70.3
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 1.9e-57 226.1 159 75.5
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 3.3e-57 225.3 146 70.5
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 5.7e-57 224.6 141 71.6
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 7.4e-57 224.2 151 68.2
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 2.1e-56 222.6 134 75.4
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 2.8e-56 222.2 154 65.6
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 1.8e-55 219.5 149 65.8
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 1.8e-55 219.5 146 68.5
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 5.3e-55 218.0 149 65.8
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 2.0e-54 216.1 156 61.5
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 4.5e-54 214.9 144 66.7
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 1.3e-53 213.4 157 65.6
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 2.2e-53 212.6 153 60.8
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 2.2e-53 212.6 135 68.9
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 3.8e-53 211.8 151 65.6
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 5.0e-53 211.5 146 65.8
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 9.3e-52 207.2 211 54.0
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.1e-51 206.1 206 53.9
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.5e-51 205.3 206 54.4
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 1.8e-50 203.0 150 64.0
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 3.9e-50 201.8 121 77.7
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 7.9e-43 177.6 127 61.4
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.1e-41 173.7 104 76.0
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 4.3e-41 171.8 138 63.0
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 3.7e-40 168.7 137 54.7
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 4.8e-40 168.3 97 77.3
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 4.8e-32 141.7 84 75.0
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-22 110.5 83 60.2
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 3.8e-21 105.5 72 66.7
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 5.7e-17 91.7 157 33.1
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 3.8e-13 79.0 82 45.1
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 1.9e-12 76.6 135 34.1
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 2.7e-06 56.2 43 60.5


User provided reference genes

Program Settings