Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 5.4e-78 294.3 150 100.0
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.5e-43 179.9 251 47.8
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.5e-43 179.9 251 47.8
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.8e-42 175.6 251 47.4
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.8e-41 172.9 251 45.8
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 6.9e-41 171.0 251 46.2
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.9e-36 155.2 252 42.1
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.3e-35 152.1 252 42.5
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.3e-35 151.8 252 42.9
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.3e-35 151.8 251 40.6
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.7e-34 148.7 256 42.2
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 4.0e-33 145.2 248 41.9
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.2e-32 143.7 71 93.0
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 1.5e-27 126.7 133 57.9
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.3e-26 123.6 71 77.5
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 1.6e-26 123.2 225 40.4
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 2.8e-26 122.5 71 76.1
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.4e-25 120.2 71 71.8
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.8e-25 119.8 71 74.6
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.5e-24 116.7 71 70.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.0e-24 116.3 71 70.4
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.4e-24 115.5 71 74.6
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.5e-24 115.2 71 69.0
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.8e-24 114.8 71 69.0
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.0e-23 114.0 71 69.0
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.2e-23 112.8 71 69.0
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 6.5e-23 111.3 71 70.4
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 6.5e-23 111.3 71 69.0
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 6.5e-23 111.3 72 70.8
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 8.4e-23 110.9 71 69.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.4e-22 110.2 80 65.0
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.4e-22 110.2 80 65.0
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.5e-22 109.4 80 67.5
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 3.2e-22 109.0 71 70.4
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 4.2e-22 108.6 73 74.0
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.2e-21 107.1 89 59.6
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.1e-21 106.3 72 68.1
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.1e-21 106.3 80 61.2
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.7e-21 105.9 76 65.8
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.5e-21 105.5 72 68.1
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.5e-21 105.5 85 57.6
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 3.5e-21 105.5 80 62.5
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.5e-21 105.5 81 61.7
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 6.0e-21 104.8 71 63.4
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 6.0e-21 104.8 81 61.7
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 7.9e-21 104.4 89 57.3
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 7.9e-21 104.4 85 56.5
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 7.9e-21 104.4 83 61.4
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.0e-20 104.0 89 57.3
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.0e-20 104.0 89 57.3
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.0e-20 104.0 80 60.0
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.3e-20 103.6 105 53.3
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.3e-20 103.6 105 53.3
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.8e-20 103.2 72 65.3
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.8e-20 103.2 72 65.3
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.8e-20 103.2 89 57.3
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.3e-20 102.8 72 68.1
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.0e-20 102.4 72 65.3
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 3.9e-20 102.1 106 59.4
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 6.7e-20 101.3 80 62.5
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 8.7e-20 100.9 72 70.8
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 8.7e-20 100.9 72 62.5
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 8.7e-20 100.9 81 59.3
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.1e-19 100.5 106 50.9
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.1e-19 100.5 72 63.9
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.1e-19 100.5 85 57.6
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.5e-19 100.1 86 57.0
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 1.5e-19 100.1 74 64.9
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.5e-19 100.1 110 49.1
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.9e-19 99.8 71 64.8
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 2.5e-19 99.4 104 50.0
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 2.5e-19 99.4 104 50.0
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 2.5e-19 99.4 72 68.1
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 3.3e-19 99.0 97 50.5
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 4.3e-19 98.6 80 56.2
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 4.3e-19 98.6 80 57.5
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 7.4e-19 97.8 80 57.5
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 7.4e-19 97.8 79 62.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.4e-19 97.8 71 62.0
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.4e-19 97.8 72 63.9
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 7.4e-19 97.8 81 58.0
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 9.7e-19 97.4 72 65.3
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 9.7e-19 97.4 71 64.8
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-18 97.1 85 55.3
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.6e-18 96.7 80 56.2
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 2.2e-18 96.3 88 52.3
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 3.7e-18 95.5 71 63.4
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 4.8e-18 95.1 72 66.7
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 6.3e-18 94.7 72 62.5
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 8.2e-18 94.4 80 55.0
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.4e-17 93.6 80 56.2
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.4e-17 93.6 129 43.4
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.4e-17 93.6 105 49.5
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.8e-17 93.2 72 62.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.8e-17 93.2 73 61.6
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.8e-17 93.2 105 47.6
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.8e-17 93.2 72 62.5
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 2.4e-17 92.8 73 63.0
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 3.1e-17 92.4 75 58.7
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.1e-17 92.4 73 58.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.1e-17 92.4 82 56.1
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 5.3e-17 91.7 80 58.8
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 6.9e-17 91.3 71 60.6
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.2e-16 90.5 83 54.2
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.2e-16 90.5 81 58.0
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.2e-16 90.5 75 60.0
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.5e-16 90.1 71 59.2
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 2.0e-16 89.7 74 60.8
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.6e-16 89.4 60 70.0
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.4e-16 89.0 81 51.9
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 3.4e-16 89.0 83 54.2
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.0e-15 87.4 80 55.0
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.7e-15 86.7 81 53.1
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.7e-15 86.7 74 56.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.9e-15 85.9 73 61.6
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 5.0e-15 85.1 79 51.9
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 6.5e-15 84.7 105 41.9
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 6.5e-15 84.7 71 53.5
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 8.5e-15 84.3 73 57.5
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 8.5e-15 84.3 73 53.4
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.4e-14 83.6 72 54.2
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.4e-14 83.6 61 65.6
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.4e-14 83.6 73 52.1
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.9e-14 83.2 79 51.9
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.5e-14 82.8 106 43.4
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.5e-14 82.8 82 51.2
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.5e-14 82.8 104 45.2
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 3.2e-14 82.4 82 52.4
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 7.2e-14 81.3 74 54.1
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 7.2e-14 81.3 72 54.2
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 9.3e-14 80.9 79 51.9
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.6e-13 80.1 71 49.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.6e-13 80.1 81 50.6
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.6e-13 80.1 88 46.6
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.1e-13 79.7 82 47.6
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.7e-13 79.3 79 51.9
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 3.6e-13 79.0 74 50.0
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 4.6e-13 78.6 48 70.8
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 7.9e-13 77.8 71 52.1
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.0e-12 77.4 72 51.4
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.0e-12 77.4 72 51.4
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.8e-12 76.6 72 50.0
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.8e-12 76.6 72 50.0
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.8e-12 76.6 72 50.0
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.3e-12 76.3 46 71.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 3.0e-12 75.9 79 49.4
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 8.8e-12 74.3 106 44.3
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.5e-11 73.6 103 40.8
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.5e-11 73.6 96 42.7
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.5e-11 73.6 43 76.7
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.9e-11 73.2 57 59.6
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 7.4e-11 71.2 44 63.6
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 9.7e-11 70.9 80 47.5
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.7e-10 70.1 40 75.0
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 3.7e-10 68.9 77 44.2
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.7e-10 68.9 138 32.6
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 6.3e-10 68.2 138 34.1
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 8.2e-10 67.8 78 42.3
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 8.2e-10 67.8 78 42.3
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 8.2e-10 67.8 51 60.8
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.1e-09 67.4 125 34.4
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.9e-09 64.7 50 58.0
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 2.0e-08 63.2 71 43.7
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.6e-08 62.8 49 59.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.5e-08 62.0 144 34.7
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.0e-07 58.5 74 43.2
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.5e-07 58.2 97 35.1


User provided reference genes

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