Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 2.6e-36 154.8 78 100.0
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 2.4e-29 131.7 69 95.7
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 4.5e-28 127.5 69 91.3
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 4.5e-28 127.5 69 91.3
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 4.5e-28 127.5 69 91.3
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.7e-27 125.6 69 89.9
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.7e-27 125.6 69 89.9
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 2.2e-27 125.2 69 89.9
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 5.0e-27 124.0 69 88.4
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 5.0e-27 124.0 69 89.9
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 5.0e-27 124.0 69 88.4
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 8.5e-27 123.2 69 88.4
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.5e-26 122.5 69 87.0
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.2e-26 120.9 69 85.5
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 4.2e-26 120.9 69 85.5
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 5.5e-26 120.6 69 85.5
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.2e-25 119.4 69 84.1
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.2e-23 112.8 69 79.7
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 2.6e-23 111.7 69 78.3
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 4.4e-23 110.9 69 73.9
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 4.4e-23 110.9 69 73.9
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 7.5e-23 110.2 69 73.9
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 7.5e-23 110.2 69 75.4
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 9.8e-23 109.8 69 73.9
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 9.8e-23 109.8 69 73.9
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 9.8e-23 109.8 69 73.9
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.7e-22 109.0 69 76.8
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 1.7e-22 109.0 69 73.9
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.2e-22 108.6 69 75.4
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 2.8e-22 108.2 69 76.8
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 3.7e-22 107.8 69 73.9
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 4.9e-22 107.5 69 75.4
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 8.3e-22 106.7 69 72.5
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.1e-21 106.3 69 71.0
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.4e-21 105.9 69 73.9
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.8e-21 105.5 69 71.0
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.8e-21 105.5 69 72.5
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 1.8e-21 105.5 69 72.5
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 2.4e-21 105.1 69 72.5
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 4.1e-21 104.4 69 72.5
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 5.4e-21 104.0 69 71.0
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 7.0e-21 103.6 69 71.0
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 9.1e-21 103.2 69 68.1
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.2e-20 102.8 69 68.1
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 1.2e-20 102.8 69 69.6
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.6e-20 102.4 69 69.6
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 1.6e-20 102.4 69 69.6
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 2.0e-20 102.1 69 71.0
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.5e-20 101.3 69 66.7
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 3.5e-20 101.3 69 68.1
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 4.5e-20 100.9 69 68.1
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 5.9e-20 100.5 69 66.7
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 7.7e-20 100.1 69 68.1
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 1.0e-19 99.8 69 66.7
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.0e-19 99.8 71 64.8
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.0e-19 99.8 69 66.7
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.0e-19 99.8 69 68.1
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.7e-19 99.0 61 75.4
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.7e-19 99.0 69 66.7
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 2.3e-19 98.6 69 66.7
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 2.3e-19 98.6 69 66.7
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 2.3e-19 98.6 69 68.1
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 2.3e-19 98.6 69 68.1
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.3e-19 98.6 69 66.7
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 2.9e-19 98.2 69 65.2
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 5.0e-19 97.4 69 62.3
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 5.0e-19 97.4 69 65.2
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 6.6e-19 97.1 69 65.2
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 6.6e-19 97.1 69 65.2
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 6.6e-19 97.1 69 65.2
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 6.6e-19 97.1 69 66.7
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 6.6e-19 97.1 69 66.7
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 8.6e-19 96.7 69 63.8
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 8.6e-19 96.7 69 62.3
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 8.6e-19 96.7 69 65.2
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.1e-18 96.3 69 65.2
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.1e-18 96.3 69 66.7
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 1.9e-18 95.5 69 63.8
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 2.5e-18 95.1 69 65.2
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 2.5e-18 95.1 69 63.8
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.3e-18 94.7 69 71.0
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 3.3e-18 94.7 69 63.8
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.2e-18 94.4 69 60.9
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 4.2e-18 94.4 69 60.9
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 5.5e-18 94.0 69 62.3
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 5.5e-18 94.0 69 63.8
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 5.5e-18 94.0 69 62.3
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 7.2e-18 93.6 69 63.8
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 7.2e-18 93.6 69 63.8
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.2e-18 93.6 69 62.3
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 7.2e-18 93.6 69 62.3
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 9.5e-18 93.2 69 63.8
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.6e-17 92.4 69 63.8
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.1e-17 92.0 69 63.8
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.1e-17 92.0 69 62.3
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.8e-17 91.7 69 56.5
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.8e-17 91.7 69 62.3
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.8e-17 91.7 69 62.3
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 2.8e-17 91.7 69 59.4
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.6e-17 91.3 69 60.9
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.6e-17 91.3 69 62.3
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.7e-17 90.9 69 62.3
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 4.7e-17 90.9 69 58.0
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 1.4e-16 89.4 69 60.9
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.4e-16 89.4 69 59.4
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.8e-16 89.0 69 60.9
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 2.3e-16 88.6 69 59.4
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 3.0e-16 88.2 69 60.9
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.0e-16 87.8 78 56.4
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 6.8e-16 87.0 69 56.5
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.2e-15 86.3 69 59.4
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 2.6e-15 85.1 69 56.5
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 2.6e-15 85.1 69 56.5
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 2.6e-15 85.1 69 56.5
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 3.4e-15 84.7 81 53.1
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 4.4e-15 84.3 69 56.5
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 9.8e-15 83.2 69 55.1
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 9.8e-15 83.2 69 55.1
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 1.3e-14 82.8 46 87.0
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 1.3e-14 82.8 69 56.5
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 2.2e-14 82.0 100 45.0
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 2.2e-14 82.0 95 47.4
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 4.9e-14 80.9 69 53.6
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 4.9e-14 80.9 87 50.6
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 8.3e-14 80.1 46 84.8
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.4e-13 79.3 69 50.7
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 7.0e-13 77.0 69 53.6
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 9.2e-13 76.6 69 49.3
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.6e-12 75.9 72 50.0
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 3.5e-12 74.7 69 52.2
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 3.5e-12 74.7 69 52.2
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 7.8e-12 73.6 48 75.0
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 1.0e-11 73.2 50 76.0
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 1.3e-11 72.8 42 83.3
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.3e-11 72.8 69 47.8
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 5.0e-11 70.9 69 50.7
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 9.5e-10 66.6 76 47.4
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.8e-08 62.4 45 57.8
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.3e-08 62.0 45 60.0
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 5.2e-08 60.8 69 47.8
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 5.2e-08 60.8 69 43.5
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 5.2e-08 60.8 69 42.0
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 2.9e-06 55.1 45 53.3
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 4.9e-06 54.3 86 38.4


User provided reference genes

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