Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 0.0e+00 1893.6 996 100.0
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 0.0e+00 1882.8 996 99.4
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 0.0e+00 1782.7 999 94.0
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 0.0e+00 1758.4 987 93.8
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 0.0e+00 1609.3 993 85.4
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 0.0e+00 1568.5 1015 81.7
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 0.0e+00 1554.7 999 82.0
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 0.0e+00 1546.6 999 81.4
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 0.0e+00 1534.6 999 81.4
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 0.0e+00 1519.2 893 90.1
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 0.0e+00 1516.5 997 80.4
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 0.0e+00 1515.4 999 80.4
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 0.0e+00 1259.2 1013 67.7
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 0.0e+00 1159.1 1000 63.3
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 7.0e-291 1004.2 1012 58.1
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 9.9e-253 877.5 996 49.3
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 4.9e-252 875.2 1009 47.8
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 5.4e-251 871.7 1000 49.0
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 2.5e-248 862.8 999 48.0
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 9.6e-248 860.9 999 47.8
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 4.7e-247 858.6 1000 47.6
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 5.8e-245 851.7 1009 47.0
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 2.9e-244 849.4 1057 46.5
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 2.4e-243 846.3 998 47.4
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 2.1e-242 843.2 964 49.7
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 4.6e-242 842.0 965 48.1
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 1.1e-240 837.4 1009 46.9
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.5e-240 837.0 1010 46.8
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 7.3e-240 834.7 994 48.1
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 1.8e-238 830.1 1046 45.2
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 9.9e-237 824.3 998 46.3
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 2.9e-236 822.8 1003 46.3
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 4.9e-236 822.0 1012 44.7
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 4.2e-235 818.9 1013 45.7
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 2.7e-234 816.2 894 50.7
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 1.8e-233 813.5 965 47.7
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 1.8e-233 813.5 1015 45.9
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 2.3e-233 813.1 1010 46.2
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 5.1e-233 812.0 1021 44.5
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 6.7e-233 811.6 944 47.7
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 3.7e-231 805.8 1010 44.7
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 1.7e-228 797.0 1019 44.9
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 6.4e-228 795.0 1003 44.8
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 6.4e-228 795.0 1011 44.8
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 3.5e-226 789.3 996 43.7
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 4.0e-222 775.8 1005 43.3
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 8.4e-220 768.1 904 48.2
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 1.1e-219 767.7 1007 43.9
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 4.2e-219 765.8 972 44.9
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 7.1e-219 765.0 995 42.4
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 3.5e-218 762.7 976 44.1
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 7.4e-216 755.0 999 43.9
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 9.7e-216 754.6 1019 43.3
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 2.4e-214 750.0 1007 42.6
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 9.0e-214 748.0 1010 43.2
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.0e-212 744.6 989 43.4
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.3e-212 744.2 1043 42.2
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 1.4e-211 740.7 1004 43.4
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 2.5e-211 740.0 1001 42.8
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 6.1e-210 735.3 1007 41.6
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 1.1e-208 731.1 885 46.6
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 2.5e-208 729.9 994 42.4
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 2.5e-208 729.9 983 42.2
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.8e-206 723.8 1036 41.4
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 2.4e-206 723.4 1007 41.0
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 2.6e-205 719.9 985 42.6
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 1.7e-204 717.2 1001 41.0
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 2.1e-202 710.3 1030 42.3
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 2.1e-202 710.3 991 42.5
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 6.7e-201 705.3 1000 42.1
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 2.6e-200 703.4 1035 40.9
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 8.2e-199 698.4 1020 41.8
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 3.5e-197 693.0 906 44.0
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 3.2e-195 686.4 965 41.3
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 1.6e-194 684.1 1020 39.7
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 2.7e-194 683.3 1006 40.8
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 1.1e-190 671.4 901 43.3
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 5.3e-190 669.1 839 44.9
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 4.5e-189 666.0 910 41.9
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 1.1e-187 661.4 964 39.7
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 4.2e-187 659.4 969 42.2
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 5.2e-185 652.5 934 40.9
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 1.7e-183 647.5 1025 38.8
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 7.0e-182 642.1 935 41.1
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 1.2e-181 641.3 1044 38.5
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 1.0e-180 638.3 887 42.4
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 1.3e-180 637.9 1038 38.6
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 6.1e-178 629.0 907 41.2
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 2.0e-176 624.0 939 39.4
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 3.3e-171 606.7 775 42.5
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 4.7e-170 602.8 997 38.3
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 1.7e-164 584.3 661 48.1
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.1e-163 581.6 700 45.0
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 4.0e-161 573.2 1006 34.7
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 1.4e-153 548.1 834 39.0
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 2.0e-152 544.3 778 41.8
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 5.4e-150 536.2 889 37.8
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 2.8e-146 523.9 1033 34.6
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 3.6e-146 523.5 673 43.1
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 9.0e-129 465.7 828 36.7
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 1.9e-126 458.0 932 33.6
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 5.4e-65 253.8 1032 24.5
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.0e-52 213.0 640 28.0
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 1.3e-50 206.1 136 79.4
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 7.8e-48 196.8 320 39.7
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 8.0e-45 186.8 120 76.7
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 2.3e-44 185.3 278 39.2
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 1.2e-43 183.0 184 53.8
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 6.4e-42 177.2 753 23.5
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 7.5e-35 153.7 696 23.4
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 3.0e-31 141.7 87 87.4
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 3.7e-26 124.8 132 54.5
A08p36810 Brassica napus HOM05D000256 ORTHO05D000119 5.2e-20 104.4 57 98.2
BraA08t35582Z Brassica rapa HOM05D000256 ORTHO05D000119 5.2e-20 104.4 57 98.2
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 4.4e-19 101.3 871 21.8
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 1.2e-16 93.2 419 22.4
BcaB02g07770 Brassica carinata HOM05D004445 ORTHO05D005578 9.9e-11 73.6 46 82.6


User provided reference genes

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