Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 0.0e+00 1713.0 910 100.0
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 0.0e+00 1689.9 910 98.6
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 0.0e+00 1651.3 910 96.8
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 0.0e+00 1651.3 910 96.8
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 0.0e+00 1540.4 916 90.7
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 0.0e+00 1530.8 925 88.6
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 0.0e+00 1526.5 922 88.7
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 0.0e+00 1524.2 923 88.6
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 0.0e+00 1505.7 920 88.2
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 0.0e+00 1425.2 925 83.8
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 0.0e+00 1320.8 926 77.3
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 0.0e+00 1136.7 688 87.8
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 3.3e-303 1045.0 915 62.8
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 3.3e-295 1018.5 887 62.3
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 9.9e-292 1006.9 906 61.7
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 1.3e-291 1006.5 925 60.3
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 1.2e-289 1000.0 915 60.2
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 1.6e-289 999.6 894 61.2
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.6e-289 999.6 924 59.8
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 2.7e-289 998.8 905 60.9
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 2.7e-289 998.8 929 60.6
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 1.6e-286 989.6 936 59.4
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 2.1e-286 989.2 896 61.0
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 6.2e-286 987.6 896 60.5
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 8.1e-286 987.3 915 59.0
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 8.1e-286 987.3 920 59.0
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 1.2e-284 983.4 928 58.4
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 2.9e-283 978.8 933 58.6
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.4e-282 976.5 861 61.2
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 9.3e-282 973.8 889 59.5
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 1.6e-281 973.0 926 58.1
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 1.0e-280 970.3 907 58.9
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 1.3e-280 969.9 926 58.2
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 4.0e-277 958.4 915 58.1
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 6.9e-277 957.6 927 57.8
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.6e-276 955.7 909 58.2
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 3.4e-276 955.3 918 57.3
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.4e-276 955.3 909 58.2
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.7e-275 953.0 909 58.1
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 2.2e-275 952.6 888 58.6
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 6.4e-275 951.0 909 58.2
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 1.1e-274 950.3 917 57.8
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 4.2e-274 948.3 904 57.3
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 5.4e-274 948.0 906 58.4
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 4.6e-273 944.9 912 57.0
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 6.0e-273 944.5 913 57.7
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.3e-272 943.3 915 57.0
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 3.0e-272 942.2 917 57.0
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 1.5e-271 939.9 874 57.7
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 3.6e-270 935.3 864 58.6
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 4.8e-270 934.9 872 57.0
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 1.1e-269 933.7 915 57.4
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 6.9e-269 931.0 932 56.2
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 1.5e-268 929.9 929 56.3
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 8.4e-267 924.1 889 57.5
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 5.4e-266 921.4 919 56.8
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 9.3e-266 920.6 917 56.8
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.6e-265 919.8 906 56.7
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 1.1e-263 913.7 883 56.3
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 7.4e-263 911.0 909 55.8
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.1e-262 909.4 901 56.0
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 3.1e-261 905.6 889 55.3
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 6.9e-261 904.4 997 52.8
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 9.0e-261 904.0 906 56.8
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 5.5e-258 894.8 909 55.8
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 5.5e-258 894.8 916 55.8
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 1.2e-257 893.6 872 56.1
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.0e-256 890.6 901 55.6
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 3.0e-256 889.0 891 54.2
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 3.9e-256 888.6 891 54.8
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 5.1e-256 888.3 923 53.6
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 3.1e-253 879.0 876 55.4
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 2.6e-252 875.9 855 55.6
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.6e-252 875.9 887 55.2
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 5.0e-251 871.7 924 54.1
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 6.1e-249 864.8 889 54.4
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 1.8e-248 863.2 932 53.8
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 1.9e-247 859.8 911 53.5
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 4.8e-246 855.1 874 54.3
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 1.3e-243 847.0 824 57.5
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 1.4e-242 843.6 936 52.8
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 2.3e-240 836.3 819 57.3
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 4.8e-238 828.6 745 60.0
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.1e-237 827.4 785 58.1
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 2.4e-237 826.2 932 52.3
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 2.0e-236 823.2 921 51.7
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 7.7e-236 821.2 895 53.1
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 6.7e-232 808.1 854 52.3
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 2.2e-230 803.1 766 59.3
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 7.2e-226 788.1 897 50.5
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 1.4e-216 757.3 799 52.2
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 8.8e-216 754.6 886 49.4
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 5.7e-215 751.9 769 55.0
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 2.2e-214 750.0 888 50.6
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 1.5e-210 737.3 652 61.2
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 5.0e-195 685.6 551 64.6
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 6.2e-185 652.1 612 56.4
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 1.7e-182 644.0 909 42.6
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 4.6e-180 636.0 892 42.6
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.5e-178 630.9 550 59.5
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.1e-177 627.1 902 41.1
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 4.9e-174 615.9 903 40.0
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.9e-162 577.4 708 48.9
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 6.2e-153 545.8 475 59.6
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 3.1e-152 543.5 804 45.3
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 8.7e-147 525.4 909 39.1
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 5.3e-128 463.0 470 56.0
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 2.1e-108 397.9 929 32.3
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 6.1e-108 396.4 952 33.4
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 4.7e-100 370.2 418 53.6
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 8.0e-100 369.4 313 64.2
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.4e-96 358.6 979 28.9
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 9.1e-96 355.9 402 53.7
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 2.7e-95 354.4 289 65.4
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.1e-88 332.4 350 52.6
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.9e-81 307.8 663 34.1
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.8e-80 305.1 449 44.3
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 8.9e-75 286.2 365 51.5
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 8.3e-73 279.6 268 58.6
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 7.5e-66 256.5 256 57.4
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 8.6e-62 243.0 442 41.2
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.2e-57 228.4 180 66.7
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 3.0e-54 218.0 217 53.5
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 2.5e-53 214.9 384 40.9
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 4.2e-48 197.6 163 60.7
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.1e-47 195.3 380 37.4
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.3e-45 188.0 192 51.6
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.9e-41 174.1 270 38.1
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 6.4e-41 173.7 131 69.5
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 7.9e-39 166.8 177 50.8
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 1.2e-34 152.9 136 58.1
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 2.5e-29 135.2 170 54.1
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 7.4e-29 133.7 95 74.7
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-27 129.8 129 54.3
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 2.2e-25 122.1 141 52.5
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.1e-21 109.8 97 56.7
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.7e-17 95.9 95 57.9
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 7.2e-16 90.5 92 55.4
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.6e-15 88.2 63 71.4
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 4.6e-15 87.8 159 41.5
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 2.3e-14 85.5 68 64.7
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.5e-13 82.8 188 38.3
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.7e-12 79.3 48 75.0
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.4e-11 75.5 153 30.1
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 6.5e-09 67.4 60 58.3
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 7.2e-08 63.9 112 38.4
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 2.3e-06 58.9 61 49.2


User provided reference genes

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