Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 3.8e-108 394.8 197 100.0
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 8.6e-108 393.7 197 99.5
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 4.3e-99 364.8 197 94.4
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 4.7e-98 361.3 195 93.8
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 4.7e-98 361.3 195 93.8
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 1.4e-97 359.8 195 93.3
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 1.4e-97 359.8 195 93.3
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 1.2e-96 356.7 196 93.4
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 1.5e-96 356.3 195 92.3
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 2.9e-95 352.1 195 91.3
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 3.2e-94 348.6 194 90.7
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 4.1e-94 348.2 195 90.8
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 9.2e-94 347.1 197 87.8
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 5.6e-91 337.8 195 87.7
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 4.0e-89 331.6 195 86.2
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 2.3e-84 315.8 157 98.1
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 2.9e-79 298.9 195 75.4
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 3.0e-76 288.9 194 71.1
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 3.9e-68 261.9 199 66.8
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 4.3e-67 258.5 201 67.2
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 1.3e-66 256.9 197 64.5
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 1.3e-66 256.9 197 64.5
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 4.8e-66 255.0 197 64.5
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 1.1e-65 253.8 198 66.7
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 4.0e-65 251.9 193 67.4
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 9.0e-65 250.8 193 66.8
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 1.5e-64 250.0 194 63.9
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 1.5e-64 250.0 195 65.1
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 2.0e-64 249.6 194 65.5
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 5.8e-64 248.1 200 63.0
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 5.8e-64 248.1 200 63.0
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 3.8e-63 245.4 194 64.4
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 4.9e-63 245.0 194 64.4
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 8.4e-63 244.2 193 64.8
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 1.1e-62 243.8 195 65.1
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 1.4e-62 243.4 197 63.5
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.4e-62 243.4 196 64.3
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 3.2e-62 242.3 196 64.8
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 3.2e-62 242.3 196 64.3
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 3.2e-62 242.3 197 62.9
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 4.2e-62 241.9 197 64.0
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 1.2e-61 240.4 192 65.1
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 1.6e-61 240.0 194 62.4
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 2.1e-61 239.6 194 62.9
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 2.1e-61 239.6 190 66.3
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 2.1e-61 239.6 194 66.0
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 4.6e-61 238.4 197 61.9
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 4.6e-61 238.4 196 65.3
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 6.0e-61 238.0 229 54.6
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 7.8e-61 237.7 194 63.4
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 7.8e-61 237.7 194 63.4
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.3e-60 236.9 195 65.1
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 3.0e-60 235.7 195 64.1
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 3.0e-60 235.7 195 63.6
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 5.1e-60 235.0 197 60.9
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 5.1e-60 235.0 194 60.8
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 6.6e-60 234.6 196 62.2
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 6.6e-60 234.6 196 62.2
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 8.7e-60 234.2 194 61.9
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 8.7e-60 234.2 194 63.4
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 8.7e-60 234.2 197 62.9
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 1.5e-59 233.4 194 60.8
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 2.5e-59 232.6 197 60.9
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 4.3e-59 231.9 197 62.4
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 5.6e-59 231.5 197 60.9
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 9.6e-59 230.7 198 60.6
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 9.6e-59 230.7 199 64.3
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 9.6e-59 230.7 198 64.1
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 1.3e-58 230.3 198 60.6
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 2.1e-58 229.6 207 59.9
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 2.1e-58 229.6 199 63.3
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 2.8e-58 229.2 195 62.1
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 3.6e-58 228.8 196 62.2
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 8.1e-58 227.6 193 62.7
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 8.1e-58 227.6 195 61.0
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 1.8e-57 226.5 229 55.0
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 3.1e-57 225.7 194 63.4
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 3.1e-57 225.7 198 61.1
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 4.0e-57 225.3 196 61.2
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 2.0e-56 223.0 187 63.1
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 3.4e-56 222.2 193 58.5
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 1.9e-54 216.5 192 59.9
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 1.9e-54 216.5 192 59.9
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 5.4e-54 214.9 191 59.2
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 1.2e-53 213.8 189 63.5
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 6.7e-52 208.0 194 58.8
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 1.1e-51 207.2 194 58.2
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 2.1e-50 203.0 276 45.7
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 1.1e-49 200.7 198 57.6
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.4e-49 200.3 198 56.6
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 5.3e-49 198.4 198 56.1
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 1.2e-48 197.2 192 55.2
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 2.0e-48 196.4 189 55.6
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 1.0e-47 194.1 194 56.2
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 4.9e-47 191.8 194 55.2
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 1.1e-46 190.7 156 64.1
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 1.4e-46 190.3 193 56.0
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 5.5e-46 188.3 196 55.6
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 7.1e-46 188.0 194 55.2
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 7.1e-46 188.0 194 56.2
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 1.2e-45 187.2 193 54.9
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 2.3e-44 183.0 193 54.9
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 8.7e-44 181.0 190 52.1
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 2.5e-43 179.5 194 53.1
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 9.6e-43 177.6 190 53.2
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 3.4e-40 169.1 184 53.8
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 1.1e-30 137.5 116 62.1
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 9.4e-30 134.4 115 60.9
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 1.6e-29 133.7 192 43.8
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 6.1e-29 131.7 191 43.5
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 1.4e-22 110.5 115 54.8
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 2.2e-18 96.7 187 34.8
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 8.2e-18 94.7 117 50.4
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 7.4e-11 71.6 77 48.1
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 4.8e-10 68.9 57 54.4
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 7.0e-09 65.1 46 67.4
RcHm_v2.0_Chr2g0134071 Rosa chinensis HOM05D006871 ORTHO05D008544 5.9e-08 62.0 64 54.7
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 1.0e-07 61.2 199 29.6
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 1.5e-06 57.4 185 30.8


User provided reference genes

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