Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p00090 Brassica napus HOM05D000357 ORTHO05D033464 8.4e-36 152.9 65 100.0
BolC8t46809H Brassica oleracea HOM05D000357 ORTHO05D033464 8.4e-36 152.9 65 100.0
C08p00030 Brassica napus HOM05D000357 ORTHO05D040309 1.7e-33 145.2 65 95.4
BolC8t46804H Brassica oleracea HOM05D000357 ORTHO05D040309 1.7e-33 145.2 65 95.4
BcaC07g37006 Brassica carinata HOM05D000357 ORTHO05D000242 2.6e-13 78.2 33 97.0
BcaC07g37011 Brassica carinata HOM05D000357 ORTHO05D000242 2.6e-13 78.2 33 97.0
A08p02860 Brassica napus HOM05D000357 ORTHO05D000242 8.4e-12 73.2 43 69.8
BraA08t32319Z Brassica rapa HOM05D000357 ORTHO05D000242 8.4e-12 73.2 43 69.8
BcaB07g33575 Brassica carinata HOM05D000357 ORTHO05D000242 1.4e-11 72.4 43 69.8
BcaC01g01269 Brassica carinata HOM05D000357 ORTHO05D000242 1.4e-11 72.4 43 69.8
BcaC08g43296 Brassica carinata HOM05D000357 ORTHO05D000242 1.4e-11 72.4 43 69.8
A06p02600 Brassica napus HOM05D000357 ORTHO05D000242 1.4e-11 72.4 43 69.8
C03p90010 Brassica napus HOM05D000357 ORTHO05D000242 1.4e-11 72.4 43 69.8
C06p06440 Brassica napus HOM05D000357 ORTHO05D000242 1.4e-11 72.4 43 69.8
BolC3t21321H Brassica oleracea HOM05D000357 ORTHO05D000242 1.4e-11 72.4 43 69.8
BolC6t35754H Brassica oleracea HOM05D000357 ORTHO05D000242 1.4e-11 72.4 43 69.8
BraA06t23467Z Brassica rapa HOM05D000357 ORTHO05D000242 1.4e-11 72.4 43 69.8
Sp1g37930 Schrenkiella parvula HOM05D000357 ORTHO05D000242 1.4e-11 72.4 43 69.8
Thhalv10012263m.g Eutrema salsugineum HOM05D000357 ORTHO05D000242 1.9e-11 72.0 43 67.4
AL1G59000 Arabidopsis lyrata HOM05D000357 ORTHO05D000242 3.2e-11 71.2 43 69.8
Carub.0001s4010 Capsella rubella HOM05D000357 ORTHO05D000242 4.2e-11 70.9 43 67.4
CARHR041240 Cardamine hirsuta HOM05D000357 ORTHO05D000242 5.5e-11 70.5 34 85.3
BcaB07g33568 Brassica carinata HOM05D000357 ORTHO05D000242 7.2e-11 70.1 43 67.4
Lalb_Chr24g0397011 Lupinus albus HOM05D000357 ORTHO05D000242 7.2e-11 70.1 56 57.1
AT1G51200 Arabidopsis thaliana HOM05D000357 ORTHO05D000242 1.2e-10 69.3 43 67.4
Lalb_Chr14g0372171 Lupinus albus HOM05D000357 ORTHO05D000242 1.2e-10 69.3 34 82.4
Lalb_Chr22g0352311 Lupinus albus HOM05D000357 ORTHO05D000242 1.2e-10 69.3 34 82.4
THA.LOC104817901 Tarenaya hassleriana HOM05D000357 ORTHO05D000242 2.7e-10 68.2 43 65.1
THA.LOC104816904 Tarenaya hassleriana HOM05D000357 ORTHO05D000242 4.6e-10 67.4 43 65.1
THA.LOC104818126 Tarenaya hassleriana HOM05D000357 ORTHO05D033464 6.1e-10 67.0 43 62.8
arahy.Tifrunner.gnm1.ann1.043YES Arachis hypogaea HOM05D000357 ORTHO05D000242 7.9e-10 66.6 34 79.4
arahy.Tifrunner.gnm1.ann1.LWZI10 Arachis hypogaea HOM05D000357 ORTHO05D000242 7.9e-10 66.6 34 79.4
arahy.Tifrunner.gnm1.ann1.77NA27 Arachis hypogaea HOM05D000357 ORTHO05D000242 1.0e-09 66.2 34 79.4
arahy.Tifrunner.gnm1.ann1.J11R1K Arachis hypogaea HOM05D000357 ORTHO05D000242 1.0e-09 66.2 34 79.4
Glyma.11G132000 Glycine max HOM05D000357 ORTHO05D000242 1.0e-09 66.2 34 79.4
Glyma.12G056500 Glycine max HOM05D000357 ORTHO05D000242 1.0e-09 66.2 34 79.4
Lalb_Chr19g0138151 Lupinus albus HOM05D000357 ORTHO05D000242 1.0e-09 66.2 34 79.4
Phvul.011G058100 Phaseolus vulgaris HOM05D000357 ORTHO05D000242 1.0e-09 66.2 34 79.4
QL01p005292 Quercus lobata HOM05D000357 ORTHO05D000242 1.0e-09 66.2 34 79.4
THA.LOC104816903 Tarenaya hassleriana HOM05D000357 ORTHO05D000242 1.0e-09 66.2 43 60.5
VMungo1127G0089 Vigna mungo HOM05D000357 ORTHO05D000242 1.0e-09 66.2 34 79.4
AUR62019270 Chenopodium quinoa HOM05D000357 ORTHO05D000242 1.3e-09 65.9 34 79.4
Ca_01286_v3 Cicer arietinum L. HOM05D000357 ORTHO05D000242 1.3e-09 65.9 34 76.5
Ciclev10016944m.g Citrus clementina HOM05D000357 ORTHO05D000242 1.3e-09 65.9 34 79.4
Sc09g0000570 Simmondsia chinensis HOM05D000357 ORTHO05D000242 1.3e-09 65.9 34 79.4
Eucgr.J00790 Eucalyptus grandis HOM05D000357 ORTHO05D000242 2.3e-09 65.1 34 76.5
COL.COLO4_24846 Corchorus olitorius HOM05D000357 ORTHO05D000242 3.0e-09 64.7 34 76.5
Hma1.2p1_0728F.1_g209260 Hydrangea macrophylla HOM05D000357 ORTHO05D000242 3.0e-09 64.7 34 76.5
Aa31LG1G14250 Aethionema arabicum HOM05D000357 ORTHO05D000242 3.9e-09 64.3 43 62.8
Lalb_Chr03g0026281 Lupinus albus HOM05D000357 ORTHO05D000242 3.9e-09 64.3 34 76.5
Potri.001G018600 Populus trichocarpa HOM05D000357 ORTHO05D000242 3.9e-09 64.3 34 76.5
Actinidia16310 Actinidia chinensis HOM05D000357 ORTHO05D000242 5.1e-09 63.9 34 76.5
CSS0043499 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 5.1e-09 63.9 34 76.5
Dinv08035 Davidia involucrata HOM05D000357 ORTHO05D000242 5.1e-09 63.9 34 76.5
CSS0049180 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 6.7e-09 63.5 34 76.5
Haze_23088 Corylus avellana HOM05D000357 ORTHO05D000242 8.7e-09 63.2 34 76.5
Glyma.13G341000 Glycine max HOM05D000357 ORTHO05D000242 8.7e-09 63.2 34 73.5
TWI32G0631 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 8.7e-09 63.2 34 76.5
GSVIVG01025305001 Vitis vinifera HOM05D000357 ORTHO05D000242 8.7e-09 63.2 34 76.5
Glyma.15G033400 Glycine max HOM05D000357 ORTHO05D000242 1.1e-08 62.8 34 73.5
Medtr2g098160 Medicago truncatula HOM05D000357 ORTHO05D000242 1.1e-08 62.8 34 73.5
Sabra01G0013200 Salix brachista HOM05D000357 ORTHO05D000242 1.1e-08 62.8 34 76.5
Sc16g0011590 Simmondsia chinensis HOM05D000357 ORTHO05D000242 1.1e-08 62.8 34 73.5
TWI34G1581 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 1.1e-08 62.8 34 73.5
TAR636G0578 Trochodendron aralioides HOM05D000357 ORTHO05D000242 1.1e-08 62.8 34 73.5
Actinidia23959 Actinidia chinensis HOM05D000357 ORTHO05D000242 1.5e-08 62.4 34 73.5
MSTRG.21395 Avicennia marina HOM05D000357 ORTHO05D000242 1.5e-08 62.4 34 70.6
CAN.G511.10 Capsicum annuum HOM05D000357 ORTHO05D000242 1.5e-08 62.4 34 73.5
ClCG03G013310 Citrullus lanatus HOM05D000357 ORTHO05D000242 1.5e-08 62.4 34 73.5
MELO3C015202.2 Cucumis melo HOM05D000357 ORTHO05D000242 1.5e-08 62.4 34 73.5
CsaV3_1G042720 Cucumis sativus L. HOM05D000357 ORTHO05D000242 1.5e-08 62.4 34 73.5
Sed0008123 Sechium edule HOM05D000357 ORTHO05D000242 1.5e-08 62.4 34 73.5
Hund07534 Selenicereus undatus HOM05D000357 ORTHO05D000242 1.5e-08 62.4 34 76.5
SGA_v2.0_scaffold42G16115 Striga asiatica HOM05D000357 ORTHO05D000242 1.5e-08 62.4 56 53.6
MELO3C014608.2 Cucumis melo HOM05D000357 ORTHO05D000242 1.9e-08 62.0 32 78.1
CsaV3_4G024130 Cucumis sativus L. HOM05D000357 ORTHO05D000242 1.9e-08 62.0 32 78.1
Manes.06G166800 Manihot esculenta HOM05D000357 ORTHO05D000242 1.9e-08 62.0 34 73.5
Peaxi162Scf00075g00107 Petunia axillaris HOM05D000357 ORTHO05D000242 1.9e-08 62.0 34 73.5
PGR119G0113 Punica granatum HOM05D000357 ORTHO05D000242 1.9e-08 62.0 34 73.5
PGSC0003DMG400031871 Solanum tuberosum HOM05D000357 ORTHO05D000242 1.9e-08 62.0 34 73.5
GSVIVG01032065001 Vitis vinifera HOM05D000357 ORTHO05D000242 1.9e-08 62.0 34 73.5
Atru.chr3.2590 Acer truncatum HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 73.5
Ca_20574_v3 Cicer arietinum L. HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 73.5
Ca_30509_v3 Cicer arietinum L. HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 73.5
Duzib168G1060 Durio zibethinus HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 73.5
Duzib170G0262 Durio zibethinus HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 73.5
Manes.14G001000 Manihot esculenta HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 70.6
Nitab4.5_0009661g0010 Nicotiana tabacum HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 70.6
Psat7g212960 Pisum sativum HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 73.5
Potri.003G205500 Populus trichocarpa HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 76.5
RcHm_v2.0_Chr5g0077181 Rosa chinensis HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 70.6
Thecc.09G228000 Theobroma cacao HOM05D000357 ORTHO05D000242 2.5e-08 61.6 34 73.5
Psat5g287400 Pisum sativum HOM05D000357 ORTHO05D000242 3.3e-08 61.2 34 67.6
TWI60G0663 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 3.3e-08 61.2 34 70.6
MELO3C023537.2 Cucumis melo HOM05D000357 ORTHO05D000242 4.3e-08 60.8 34 70.6
CsaV3_7G031210 Cucumis sativus L. HOM05D000357 ORTHO05D000242 4.3e-08 60.8 34 70.6
MD07G1007700 Malus domestica HOM05D000357 ORTHO05D000242 4.3e-08 60.8 34 67.6
MD11G1029000 Malus domestica HOM05D000357 ORTHO05D000242 4.3e-08 60.8 34 70.6
Rhsim01G0190900 Rhododendron simsii HOM05D000357 ORTHO05D000242 4.3e-08 60.8 34 73.5
Rhsim13G0224000 Rhododendron simsii HOM05D000357 ORTHO05D000242 4.3e-08 60.8 34 73.5
TPR.G27480 Trifolium pratense HOM05D000357 ORTHO05D000242 4.3e-08 60.8 34 70.6
CSS0033138 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 73.5
Dinv36282 Davidia involucrata HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 73.5
Duzib150G0642 Durio zibethinus HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 70.6
FvH4_7g00820 Fragaria vesca HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 67.6
FAN01G0833 Fragaria x ananassa HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 67.6
FAN03G1265 Fragaria x ananassa HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 67.6
FAN06G2361 Fragaria x ananassa HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 67.6
FAN10G3818 Fragaria x ananassa HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 67.6
Nitab4.5_0002766g0060 Nicotiana tabacum HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 73.5
Nitab4.5_0008868g0010 Nicotiana tabacum HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 73.5
Prupe.2G010400 Prunus persica HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 67.6
QL04p005452 Quercus lobata HOM05D000357 ORTHO05D000242 5.7e-08 60.5 34 67.6
Hma1.2p1_0312F.1_g121380 Hydrangea macrophylla HOM05D000357 ORTHO05D000242 7.4e-08 60.1 34 67.6
Lj3g0006402 Lotus japonicus HOM05D000357 ORTHO05D000242 7.4e-08 60.1 34 70.6
Sed0009220 Sechium edule HOM05D000357 ORTHO05D000242 7.4e-08 60.1 34 67.6
Sopen01g008490 Solanum pennellii HOM05D000357 ORTHO05D000242 7.4e-08 60.1 34 70.6
ClCG02G023370 Citrullus lanatus HOM05D000357 ORTHO05D000242 9.7e-08 59.7 32 75.0
Migut.D00578 Erythranthe guttata HOM05D000357 ORTHO05D000242 9.7e-08 59.7 34 67.6
MD11G1029100 Malus domestica HOM05D000357 ORTHO05D000242 9.7e-08 59.7 34 67.6
Sed0019927 Sechium edule HOM05D000357 ORTHO05D000242 9.7e-08 59.7 34 67.6
Sed0023033 Sechium edule HOM05D000357 ORTHO05D000242 9.7e-08 59.7 32 75.0
FvH4_3g43080 Fragaria vesca HOM05D000357 ORTHO05D000242 1.3e-07 59.3 34 67.6
FAN11G2772 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.3e-07 59.3 34 67.6
FAN21G1661 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.3e-07 59.3 34 67.6
FAN25G1569 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.3e-07 59.3 34 67.6
Sed0023756 Sechium edule HOM05D000357 ORTHO05D000242 1.3e-07 59.3 32 71.9
RcHm_v2.0_Chr1g0314981 Rosa chinensis HOM05D000357 ORTHO05D000242 1.6e-07 58.9 34 67.6
TPR.G6883 Trifolium pratense HOM05D000357 ORTHO05D000242 1.6e-07 58.9 34 67.6
Solyc11g061770.2 Solanum lycopersicum HOM05D000357 ORTHO05D000242 2.2e-07 58.5 34 70.6
Sopen11g023670 Solanum pennellii HOM05D000357 ORTHO05D000242 2.2e-07 58.5 34 70.6
PGSC0003DMG400013600 Solanum tuberosum HOM05D000357 ORTHO05D000242 2.2e-07 58.5 34 70.6
FAN16G3536 Fragaria x ananassa HOM05D000357 ORTHO05D000242 2.8e-07 58.2 34 67.6
Nitab4.5_0000023g0100 Nicotiana tabacum HOM05D000357 ORTHO05D000242 2.8e-07 58.2 34 67.6
MBI01_g27624_MAGBIO Magnolia biondii HOM05D000357 ORTHO05D000242 4.8e-07 57.4 34 73.5
SGA_v2.0_scaffold247G44846 Striga asiatica HOM05D000357 ORTHO05D000242 4.8e-07 57.4 34 67.6
TAR369G0084 Trochodendron aralioides HOM05D000357 ORTHO05D000242 6.3e-07 57.0 34 70.6
TAR623G0544 Trochodendron aralioides HOM05D000357 ORTHO05D000242 6.3e-07 57.0 34 70.6
Atru.chr1.967 Acer truncatum HOM05D000357 ORTHO05D000242 8.2e-07 56.6 40 62.5
Atru.chr1.996 Acer truncatum HOM05D000357 ORTHO05D000242 8.2e-07 56.6 40 62.5
CSS0045779 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 1.1e-06 56.2 34 61.8
CDE06G0182 Ceratophyllum demersum HOM05D000146 ORTHO05D002110 1.1e-06 56.2 34 73.5
Migut.N02305 Erythranthe guttata HOM05D000357 ORTHO05D000242 1.1e-06 56.2 34 64.7
CDE07G1065 Ceratophyllum demersum HOM05D000357 ORTHO05D000242 1.4e-06 55.8 34 73.5
Nn2g15417 Nelumbo nucifera HOM05D000357 ORTHO05D000242 1.4e-06 55.8 34 67.6
Prupe.6G023300 Prunus persica HOM05D000357 ORTHO05D000242 1.4e-06 55.8 34 64.7
CDE10G0943 Ceratophyllum demersum HOM05D000357 ORTHO05D000242 1.8e-06 55.5 34 73.5
ECA248G1261 Erigeron canadensis HOM05D000357 ORTHO05D000242 1.8e-06 55.5 34 61.8
SMO367G1247 Selaginella moellendorffii HOM05D000357 ORTHO05D000242 2.4e-06 55.1 33 72.7
Gohir.A11G310800 Gossypium hirsutum HOM05D000357 ORTHO05D000242 3.1e-06 54.7 32 75.0
Gohir.D11G327200 Gossypium hirsutum HOM05D000357 ORTHO05D000242 3.1e-06 54.7 32 75.0
Gorai.007G358100 Gossypium raimondii HOM05D000357 ORTHO05D000242 3.1e-06 54.7 32 75.0
Potri.006G056500 Populus trichocarpa HOM05D000357 ORTHO05D000242 3.1e-06 54.7 32 75.0
Potri.016G051700 Populus trichocarpa HOM05D000357 ORTHO05D000242 3.1e-06 54.7 32 75.0
Sabra16G0055400 Salix brachista HOM05D000357 ORTHO05D000242 3.1e-06 54.7 32 75.0
GSVIVG01033341001 Vitis vinifera HOM05D000357 ORTHO05D000242 3.1e-06 54.7 32 75.0
Zm00001eb388350 Zea mays HOM05D000357 ORTHO05D000242 3.1e-06 54.7 34 70.6
Ciclev10006050m.g Citrus clementina HOM05D000357 ORTHO05D000242 4.1e-06 54.3 32 71.9
COL.COLO4_28712 Corchorus olitorius HOM05D000357 ORTHO05D000242 4.1e-06 54.3 32 71.9
Duzib093G1681 Durio zibethinus HOM05D000357 ORTHO05D000242 4.1e-06 54.3 32 71.9
Gohir.A09G124600 Gossypium hirsutum HOM05D000357 ORTHO05D000242 4.1e-06 54.3 32 71.9
Gohir.D09G121600 Gossypium hirsutum HOM05D000357 ORTHO05D000242 4.1e-06 54.3 32 71.9
Gorai.006G139100 Gossypium raimondii HOM05D000357 ORTHO05D000242 4.1e-06 54.3 32 71.9
Os02g0195600 Oryza sativa ssp. japonica HOM05D000357 ORTHO05D000242 4.1e-06 54.3 34 70.6
Os06g0612800 Oryza sativa ssp. japonica HOM05D000357 ORTHO05D000242 4.1e-06 54.3 34 70.6
Thecc.05G164600 Theobroma cacao HOM05D000357 ORTHO05D000242 4.1e-06 54.3 32 71.9
Zm00001eb205990 Zea mays HOM05D000357 ORTHO05D000242 4.1e-06 54.3 34 70.6
Zm00001eb236360 Zea mays HOM05D000357 ORTHO05D000242 4.1e-06 54.3 34 70.6
CSS0009377 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 6.9e-06 53.5 31 77.4
Peaxi162Scf00428g00073 Petunia axillaris HOM05D000357 ORTHO05D000242 6.9e-06 53.5 34 55.9
AUR62024382 Chenopodium quinoa HOM05D000357 ORTHO05D000242 9.0e-06 53.1 39 61.5
Duzib106G1099 Durio zibethinus HOM05D000357 ORTHO05D000242 9.0e-06 53.1 32 68.8
Sabra06G0039900 Salix brachista HOM05D000357 ORTHO05D000242 9.0e-06 53.1 32 71.9
SEGI_30813 Sequoiadendron giganteum HOM05D000357 ORTHO05D000242 9.0e-06 53.1 33 69.7


User provided reference genes

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