Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 2.3e-75 285.4 141 100.0
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 2.3e-75 285.4 141 100.0
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 2.6e-74 282.0 141 97.9
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 2.6e-74 282.0 141 97.9
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 9.9e-74 280.0 141 97.2
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 2.7e-71 271.9 141 92.9
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 4.3e-69 264.6 141 89.4
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 9.6e-69 263.5 141 88.7
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.2e-68 263.1 141 87.9
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 2.1e-68 262.3 141 87.9
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 2.1e-68 262.3 141 89.4
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 2.8e-68 261.9 141 87.2
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 2.8e-68 261.9 141 87.2
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.8e-68 261.9 141 87.9
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 3.6e-68 261.5 141 87.9
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 8.9e-67 256.9 141 89.4
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 2.6e-66 255.4 140 86.4
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 2.6e-66 255.4 140 86.4
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 2.6e-66 255.4 140 86.4
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 7.6e-66 253.8 140 85.7
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 85.0
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 85.7
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 3.8e-65 251.5 140 84.3
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 3.8e-65 251.5 140 84.3
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 3.8e-65 251.5 137 86.9
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 4.9e-65 251.1 140 83.6
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 4.9e-65 251.1 140 84.3
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 4.9e-65 251.1 137 86.1
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 6.4e-65 250.8 140 84.3
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 6.4e-65 250.8 140 83.6
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 6.4e-65 250.8 140 85.0
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 8.4e-65 250.4 137 86.9
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 8.4e-65 250.4 141 85.1
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 8.4e-65 250.4 141 85.1
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 8.4e-65 250.4 141 85.1
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 8.4e-65 250.4 141 85.1
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 8.4e-65 250.4 140 83.6
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.1e-64 250.0 140 85.0
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.1e-64 250.0 141 84.4
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 1.4e-64 249.6 140 82.9
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.9e-64 249.2 169 74.0
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 83.6
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 83.6
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 1.9e-64 249.2 137 85.4
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 83.6
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 3.2e-64 248.4 140 83.6
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 3.2e-64 248.4 140 82.9
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 4.2e-64 248.1 140 82.9
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 4.2e-64 248.1 140 82.9
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 4.2e-64 248.1 140 82.9
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 4.2e-64 248.1 140 82.9
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 4.2e-64 248.1 140 82.9
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 4.2e-64 248.1 140 82.9
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 5.4e-64 247.7 140 82.9
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 5.4e-64 247.7 140 83.6
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 5.4e-64 247.7 140 82.9
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 7.1e-64 247.3 140 82.9
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 7.1e-64 247.3 140 82.9
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 7.1e-64 247.3 140 82.1
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 7.1e-64 247.3 137 85.4
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 7.1e-64 247.3 140 83.6
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 9.3e-64 246.9 140 82.1
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 9.3e-64 246.9 140 83.6
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 9.3e-64 246.9 140 83.6
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 9.3e-64 246.9 140 83.6
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 82.9
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 82.1
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 1.6e-63 246.1 140 82.1
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 2.1e-63 245.7 140 82.1
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 2.7e-63 245.4 140 82.9
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.7e-63 245.4 137 85.4
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 2.7e-63 245.4 140 81.4
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 2.7e-63 245.4 140 81.4
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 2.7e-63 245.4 140 82.1
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 2.7e-63 245.4 140 80.7
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 3.5e-63 245.0 140 82.1
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.5e-63 245.0 140 80.0
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 3.5e-63 245.0 140 82.1
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 4.6e-63 244.6 140 82.9
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 4.6e-63 244.6 140 80.0
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 4.6e-63 244.6 140 80.0
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 6.0e-63 244.2 140 80.7
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 6.0e-63 244.2 140 80.7
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 6.0e-63 244.2 140 82.1
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.0e-62 243.4 140 79.3
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 1.0e-62 243.4 140 81.4
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 1.0e-62 243.4 140 81.4
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 1.3e-62 243.0 140 80.0
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.3e-62 242.3 140 79.3
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 3.0e-62 241.9 137 83.2
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 6.6e-62 240.7 140 79.3
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 1.1e-61 240.0 140 79.3
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 1.9e-61 239.2 137 81.0
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 1.9e-61 239.2 137 82.5
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 4.3e-61 238.0 137 81.8
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 4.3e-61 238.0 128 86.7
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 4.3e-61 238.0 137 81.8
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 9.6e-61 236.9 137 81.8
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 1.3e-60 236.5 137 80.3
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.6e-60 236.1 150 77.3
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 2.1e-60 235.7 137 81.8
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 3.6e-60 235.0 141 80.1
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 8.1e-60 233.8 163 71.2
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.8e-59 232.6 166 69.3
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.1e-59 231.9 139 78.4
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 2.0e-58 229.2 137 78.1
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 4.5e-58 228.0 137 76.6
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 1.9e-56 222.6 204 57.8
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 6.0e-55 217.6 140 75.0
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 7.9e-55 217.2 198 58.1
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 1.8e-54 216.1 137 71.5
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 8.7e-54 213.8 125 79.2
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 8.7e-54 213.8 152 69.7
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 4.3e-53 211.5 114 86.8
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 2.4e-51 205.7 139 64.0
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 3.8e-49 198.4 137 65.7
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.4e-48 196.4 119 75.6
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 5.5e-48 194.5 137 62.0
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 9.3e-48 193.7 160 63.1
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 6.2e-44 181.0 135 57.8
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.4e-43 179.1 100 82.0
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 6.9e-43 177.6 99 83.8
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 9.0e-43 177.2 97 83.5
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.6e-36 156.4 116 66.4
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 1.1e-27 127.1 139 46.8
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 2.2e-25 119.4 70 78.6
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.9e-25 119.0 67 82.1
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 6.5e-25 117.9 67 82.1
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 2.5e-24 115.9 78 70.5
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 4.6e-23 111.7 140 45.7
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 1.1e-16 90.5 43 95.3
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 4.1e-11 72.0 162 32.7
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 4.1e-11 72.0 59 62.7
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 7.0e-11 71.2 49 67.3
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 3.5e-10 68.9 117 34.2
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 3.6e-07 58.9 127 28.3
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 8.0e-07 57.8 33 75.8


User provided reference genes

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