Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 1.6e-78 297.0 285 100.0
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.7e-69 266.9 283 97.2
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 2.0e-65 253.4 282 95.4
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 4.2e-63 245.7 282 94.0
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 4.7e-22 109.4 247 76.9
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 3.0e-21 106.7 187 86.6
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 3.7e-19 99.8 249 73.1
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 4.8e-19 99.4 248 71.8
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 6.3e-19 99.0 245 75.1
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 8.2e-19 98.6 251 73.7
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.1e-18 98.2 245 75.1
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.1e-18 98.2 245 75.1
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.1e-18 98.2 137 86.9
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.1e-18 98.2 251 72.9
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.4e-18 97.8 137 85.4
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.8e-18 97.4 251 72.9
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.8e-18 97.4 248 72.2
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 4.1e-18 96.3 242 76.0
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.3e-18 95.9 243 77.8
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 5.3e-18 95.9 251 72.1
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 5.3e-18 95.9 137 83.9
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 7.0e-18 95.5 247 72.1
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 9.1e-18 95.1 246 72.4
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 9.1e-18 95.1 134 85.1
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.1e-18 95.1 250 72.0
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 1.6e-17 94.4 191 81.2
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 1.6e-17 94.4 248 71.8
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 2.0e-17 94.0 134 85.8
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 4.5e-17 92.8 134 85.1
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 4.5e-17 92.8 134 85.8
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 7.7e-17 92.0 134 84.3
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 7.7e-17 92.0 242 69.8
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 1.0e-16 91.7 244 71.3
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 1.0e-16 91.7 134 85.1
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.7e-16 90.9 134 83.6
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.7e-16 90.9 134 83.6
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.7e-16 90.9 139 83.5
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 2.2e-16 90.5 135 84.4
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 2.9e-16 90.1 133 84.2
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 3.8e-16 89.7 51 78.4
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 5.0e-16 89.4 58 70.7
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 8.5e-16 88.6 54 74.1
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 8.5e-16 88.6 54 72.2
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.1e-15 88.2 54 75.9
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.1e-15 88.2 53 77.4
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.5e-15 87.8 51 76.5
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.5e-15 87.8 51 76.5
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 2.5e-15 87.0 133 83.5
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 3.2e-15 86.7 134 82.8
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 3.2e-15 86.7 135 83.7
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 3.2e-15 86.7 134 81.3
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 5.5e-15 85.9 54 75.9
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 7.2e-15 85.5 51 74.5
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 2.1e-14 84.0 132 82.6
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.7e-14 83.6 51 72.5
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 3.6e-14 83.2 132 83.3
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.6e-14 83.2 51 72.5
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 4.7e-14 82.8 134 80.6
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 4.7e-14 82.8 54 70.4
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 6.1e-14 82.4 54 68.5
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 8.0e-14 82.0 52 75.0
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 8.0e-14 82.0 51 70.6
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 8.0e-14 82.0 136 82.4
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.0e-13 81.6 51 70.6
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.0e-13 81.6 115 81.7
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.4e-13 81.3 137 81.8
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.4e-13 81.3 137 81.8
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.0e-13 80.1 50 72.0
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 4.0e-13 79.7 50 70.0
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 5.2e-13 79.3 66 59.1
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 8.8e-13 78.6 135 80.7
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 8.8e-13 78.6 50 70.0
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.2e-12 78.2 53 69.8
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-12 78.2 53 69.8
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-12 78.2 53 69.8
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-12 78.2 53 69.8
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-12 78.2 53 69.8
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 1.2e-12 78.2 51 66.7
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.2e-12 78.2 50 68.0
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.2e-12 78.2 51 64.7
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 2.6e-12 77.0 257 66.9
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.4e-12 76.6 50 66.0
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 3.7e-11 73.2 50 66.0
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 6.3e-11 72.4 50 64.0
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 1.1e-10 71.6 50 62.0
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.4e-10 71.2 57 57.9
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.8e-10 70.9 51 62.7
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 4.1e-10 69.7 52 61.5
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 5.3e-10 69.3 52 61.5
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 5.3e-10 69.3 52 61.5
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 5.3e-10 69.3 47 66.0
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 7.0e-10 68.9 50 60.0
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 7.0e-10 68.9 142 76.1
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 9.1e-10 68.6 49 61.2
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 9.1e-10 68.6 49 61.2
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 9.1e-10 68.6 56 58.9
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 9.1e-10 68.6 56 57.1
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 1.2e-09 68.2 54 57.4
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 1.2e-09 68.2 54 57.4
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.6e-09 67.8 42 71.4
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.7e-09 67.0 54 57.4
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 3.5e-09 66.6 56 55.4
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 7.7e-09 65.5 51 56.9
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 7.7e-09 65.5 47 59.6
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.7e-08 64.3 48 60.4
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 2.9e-08 63.5 47 63.8
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 2.9e-08 63.5 57 57.9
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 3.8e-08 63.2 52 57.7
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 3.8e-08 63.2 51 58.8
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.8e-08 63.2 56 57.1
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 5.0e-08 62.8 56 57.1
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 5.0e-08 62.8 51 52.9
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 5.0e-08 62.8 51 56.9
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 6.5e-08 62.4 47 61.7
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 6.5e-08 62.4 56 53.6
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 8.5e-08 62.0 56 55.4
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 8.5e-08 62.0 55 52.7
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 1.1e-07 61.6 46 60.9
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 1.9e-07 60.8 56 51.8
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 1.9e-07 60.8 56 51.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 1.9e-07 60.8 51 56.9
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.5e-07 60.5 51 54.9
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 3.2e-07 60.1 56 53.6
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 4.2e-07 59.7 55 50.9
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 4.2e-07 59.7 58 48.3
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.5e-07 59.3 60 50.0
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.2e-07 58.9 60 51.7
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 7.2e-07 58.9 50 60.0
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 9.4e-07 58.5 60 50.0
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 9.4e-07 58.5 60 48.3
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.2e-06 58.2 56 51.8
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 4.7e-06 56.2 60 48.3
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 4.7e-06 56.2 60 48.3
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 6.1e-06 55.8 60 48.3
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 6.1e-06 55.8 60 48.3
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 8.0e-06 55.5 34 67.6


User provided reference genes

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