Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 3.7e-94 348.2 179 100.0
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.6e-84 316.2 177 93.2
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.6e-84 316.2 177 93.2
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 3.3e-82 308.5 179 90.5
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 7.3e-82 307.4 179 89.9
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.6e-81 306.2 180 88.9
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 2.1e-81 305.8 180 88.3
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.1e-80 303.5 182 87.9
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.1e-80 303.5 181 87.3
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 1.4e-80 303.1 181 87.3
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 1.4e-80 303.1 181 87.3
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 5.3e-80 301.2 179 86.0
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 4.9e-78 294.7 181 86.2
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.4e-77 293.1 181 86.2
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 1.9e-77 292.7 182 85.7
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 5.4e-77 291.2 180 87.8
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.1e-74 283.5 176 87.5
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.1e-72 276.9 182 81.3
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 5.8e-71 271.2 179 81.6
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.5e-60 235.3 186 69.4
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 2.1e-57 226.1 174 70.1
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 3.5e-52 208.8 184 64.1
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 7.9e-52 207.6 179 65.9
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 7.9e-52 207.6 176 65.9
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.3e-51 206.8 184 63.6
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.3e-51 206.8 187 64.2
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.3e-51 206.8 178 65.2
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 1.8e-51 206.5 177 65.0
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 2.3e-51 206.1 180 63.3
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.3e-51 206.1 179 65.4
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.0e-51 205.7 179 65.4
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 3.0e-51 205.7 190 62.6
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 3.9e-51 205.3 192 62.5
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 3.9e-51 205.3 181 64.1
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.9e-51 205.3 180 63.9
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.1e-51 204.9 175 65.1
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 5.1e-51 204.9 175 65.1
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 5.1e-51 204.9 176 65.3
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 6.7e-51 204.5 190 61.6
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 8.7e-51 204.1 183 62.8
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 8.7e-51 204.1 181 64.1
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.1e-50 203.8 180 61.1
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.9e-50 203.0 179 63.1
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.9e-50 203.0 176 64.8
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.9e-50 203.0 185 61.6
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.9e-50 203.0 201 58.2
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 2.5e-50 202.6 191 62.3
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 2.5e-50 202.6 186 62.9
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 2.5e-50 202.6 186 63.4
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 3.3e-50 202.2 176 65.3
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 5.7e-50 201.4 183 62.8
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 5.7e-50 201.4 183 62.8
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 7.4e-50 201.1 179 62.6
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.4e-50 201.1 176 64.8
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.4e-50 201.1 176 64.8
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 7.4e-50 201.1 177 61.6
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 9.7e-50 200.7 185 61.1
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.3e-49 200.3 180 62.8
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.3e-49 200.3 176 64.8
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.3e-49 200.3 175 64.0
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.2e-49 199.5 178 65.2
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.7e-49 198.7 184 62.5
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 4.8e-49 198.4 175 64.0
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 8.2e-49 197.6 182 62.6
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.1e-48 197.2 176 63.1
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.1e-48 197.2 176 64.2
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.4e-48 196.8 178 62.4
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.4e-48 196.8 187 60.4
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.4e-48 196.8 173 64.7
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.8e-48 196.4 178 62.4
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.8e-48 196.4 178 64.0
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.8e-48 196.4 178 62.4
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.8e-48 196.4 177 60.5
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.4e-48 196.1 178 62.4
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.4e-48 196.1 178 61.8
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 4.1e-48 195.3 198 57.6
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 6.9e-48 194.5 176 61.9
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 6.9e-48 194.5 180 60.6
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 9.0e-48 194.1 184 59.2
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.2e-47 193.7 175 60.6
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 1.5e-47 193.4 176 60.8
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.0e-47 193.0 176 62.5
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.0e-47 193.0 176 60.8
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 7.7e-47 191.0 183 60.1
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.0e-46 190.7 200 57.5
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.0e-46 190.7 182 60.4
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 2.2e-46 189.5 172 62.2
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.9e-46 189.1 180 62.2
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 5.0e-46 188.3 191 57.6
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 6.5e-46 188.0 179 60.3
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 6.5e-46 188.0 188 58.5
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 8.5e-46 187.6 175 58.9
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.4e-45 186.8 200 55.0
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 2.5e-45 186.0 131 72.5
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 5.5e-45 184.9 189 60.3
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 9.4e-45 184.1 190 55.8
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.2e-44 183.7 175 58.9
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.6e-44 183.3 177 58.2
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.6e-44 183.3 181 57.5
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 4.6e-44 181.8 157 63.7
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 7.9e-44 181.0 185 56.2
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 1.8e-43 179.9 188 54.3
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.3e-43 179.5 177 57.1
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 6.7e-43 177.9 186 59.1
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 6.7e-43 177.9 146 66.4
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-42 177.2 179 60.9
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 4.3e-42 175.3 190 54.2
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.7e-42 174.1 176 60.2
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 2.2e-41 172.9 175 52.6
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 3.7e-41 172.2 115 78.3
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 3.7e-41 172.2 176 55.1
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.4e-40 169.5 110 73.6
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 3.4e-39 165.6 159 59.1
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 4.5e-39 165.2 160 60.6
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.0e-35 154.1 130 56.9
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.8e-35 153.3 193 45.6
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 9.7e-34 147.5 90 80.0
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.3e-33 147.1 194 43.8
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.8e-33 145.2 138 60.9
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.8e-32 143.3 143 60.1
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 7.0e-32 141.4 106 65.1
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 4.5e-31 138.7 144 58.3
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.2e-28 130.6 116 57.8
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 4.7e-28 128.6 108 59.3
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.0e-27 127.5 102 66.7
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.8e-27 126.7 138 57.2
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.2e-27 125.2 121 55.4
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 5.7e-26 121.7 101 60.4
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.3e-25 120.6 101 59.4
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.8e-25 119.4 126 54.0
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 6.3e-25 118.2 96 65.6
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.4e-24 117.1 105 58.1
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 3.1e-24 115.9 104 57.7
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.5e-21 107.1 110 50.0
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 4.2e-21 105.5 104 53.8
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.4e-21 104.4 102 59.8
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.6e-20 102.4 110 52.7
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.1e-20 101.7 104 49.0
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 6.1e-20 101.7 106 51.9
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 8.0e-20 101.3 127 51.2
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.8e-19 100.1 82 57.3
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.3e-19 99.8 174 41.4
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 3.4e-18 95.9 80 57.5
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 3.4e-18 95.9 96 47.9
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 7.5e-18 94.7 69 65.2
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.4e-16 88.6 64 70.3
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.7e-15 86.3 113 40.7
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.7e-15 86.3 67 65.7
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 4.5e-15 85.5 154 42.2
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 3.8e-14 82.4 81 53.1
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.5e-13 79.7 94 47.9
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.6e-12 77.0 139 34.5
AL8G34840 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 8.3e-09 64.7 124 43.5
AL1G23700 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 1.4e-08 63.9 75 58.7
AL855U10020 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 1.4e-08 63.9 75 58.7
AL1G34190 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 1.8e-08 63.5 124 42.7
AL8G33300 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 5.9e-07 58.5 55 63.6
BraA02t04844Z Brassica rapa HOM05D017491 ORTHO05D005185 1.3e-06 57.4 76 51.3


User provided reference genes

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