Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 7.6e-56 220.3 115 100.0
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 8.4e-55 216.9 115 98.3
BolC7t46662H Brassica oleracea HOM05D014277 ORTHO05D008148 6.9e-49 197.2 107 98.1
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 4.9e-47 191.0 109 89.9
A03p65340 Brassica napus HOM05D014277 ORTHO05D008148 6.9e-41 170.6 107 88.8
BraA03t15588Z Brassica rapa HOM05D014277 ORTHO05D008148 6.9e-41 170.6 107 88.8
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 9.0e-25 117.1 73 84.9
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 2.0e-24 115.9 73 83.6
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 3.4e-24 115.2 73 83.6
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 5.9e-24 114.4 73 82.2
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 1.7e-23 112.8 73 82.2
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 3.8e-23 111.7 73 80.8
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 5.5e-22 107.8 79 72.2
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 3.2e-14 82.0 95 53.7
Thhalv10000379m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 7.9e-13 77.4 103 48.5
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 1.0e-12 77.0 75 60.0
AT4G37608 Arabidopsis thaliana HOM05D014277 ORTHO05D008148 1.0e-12 77.0 81 56.8
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 2.0e-11 72.8 57 64.9
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 5.7e-11 71.2 57 61.4
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 9.7e-11 70.5 57 63.2
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 9.7e-11 70.5 77 53.2
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 4.8e-10 68.2 57 63.2
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 8.2e-10 67.4 57 63.2
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 8.2e-10 67.4 57 61.4
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 1.1e-09 67.0 57 61.4
CARHR245990 Cardamine hirsuta HOM05D014277 ORTHO05D008148 1.8e-09 66.2 75 52.0
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 1.8e-09 66.2 57 57.9
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 1.8e-09 66.2 57 59.6
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 1.8e-09 66.2 76 55.3
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 2.4e-09 65.9 64 57.8
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 4.1e-09 65.1 69 49.3
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 5.3e-09 64.7 57 57.9
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 5.3e-09 64.7 76 46.1
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 5.3e-09 64.7 72 50.0
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 6.9e-09 64.3 57 57.9
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 6.9e-09 64.3 71 54.9
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 6.9e-09 64.3 57 57.9
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 6.9e-09 64.3 73 49.3
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 9.1e-09 63.9 57 59.6
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 9.1e-09 63.9 57 59.6
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 9.1e-09 63.9 86 43.0
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 1.2e-08 63.5 56 57.1
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 1.2e-08 63.5 58 56.9
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 1.2e-08 63.5 57 61.4
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 2.0e-08 62.8 57 57.9
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 2.0e-08 62.8 81 43.2
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 2.6e-08 62.4 56 55.4
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 2.6e-08 62.4 56 55.4
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 3.4e-08 62.0 104 40.4
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 3.4e-08 62.0 104 40.4
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 3.4e-08 62.0 58 58.6
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 4.5e-08 61.6 104 40.4
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 4.5e-08 61.6 104 40.4
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 5.9e-08 61.2 72 44.4
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 5.9e-08 61.2 80 43.8
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 5.9e-08 61.2 48 60.4
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 7.7e-08 60.8 56 53.6
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 7.7e-08 60.8 58 55.2
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 7.7e-08 60.8 73 47.9
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 7.7e-08 60.8 84 42.9
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 1.0e-07 60.5 58 51.7
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 1.3e-07 60.1 57 56.1
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 1.3e-07 60.1 80 43.8
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 1.3e-07 60.1 57 56.1
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 1.3e-07 60.1 58 51.7
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 1.7e-07 59.7 58 55.2
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 1.7e-07 59.7 71 47.9
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.2e-07 59.3 57 52.6
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.2e-07 59.3 82 42.7
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.2e-07 59.3 82 42.7
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.2e-07 59.3 82 41.5
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 2.2e-07 59.3 84 42.9
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 2.2e-07 59.3 74 47.3
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 2.2e-07 59.3 58 55.2
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 2.2e-07 59.3 84 39.3
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 3.8e-07 58.5 57 56.1
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 3.8e-07 58.5 58 53.4
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 5.0e-07 58.2 56 51.8
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 5.0e-07 58.2 79 43.0
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 6.5e-07 57.8 50 58.0
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 6.5e-07 57.8 61 54.1
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 6.5e-07 57.8 68 45.6
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 8.5e-07 57.4 80 43.8
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 1.4e-06 56.6 61 52.5
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 1.9e-06 56.2 56 50.0
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 9.4e-06 53.9 49 53.1
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 9.4e-06 53.9 81 35.8
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 9.4e-06 53.9 55 49.1


User provided reference genes

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