Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-64 248.1 123 100.0
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-64 248.1 123 100.0
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 5.2e-63 244.2 123 98.4
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 5.2e-63 244.2 123 98.4
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.8e-62 240.7 123 96.7
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 9.9e-62 240.0 124 97.6
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.2e-61 238.8 123 95.1
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-61 238.4 123 94.3
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 3.8e-61 238.0 124 96.8
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 4.9e-61 237.7 124 96.8
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.1e-60 236.5 123 94.3
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-60 236.5 123 94.3
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.1e-60 236.5 123 94.3
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.4e-60 235.3 124 95.2
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 3.2e-60 235.0 124 96.0
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-60 234.6 124 96.0
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-59 233.0 123 93.5
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 3.5e-59 231.5 124 92.7
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.6e-59 231.1 123 92.7
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 92.7
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 93.5
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 92.7
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 4.6e-59 231.1 124 92.7
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.0e-59 230.7 123 92.7
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.8e-59 230.3 123 92.7
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-58 228.4 124 91.9
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.0e-58 228.4 124 91.9
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 3.9e-58 228.0 123 91.1
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.9e-58 228.0 123 91.1
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.6e-48 194.9 124 81.5
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-43 179.9 126 75.4
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 3.5e-43 178.3 126 74.6
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.9e-43 177.2 126 72.2
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.1e-42 174.5 126 72.2
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 1.1e-41 173.3 126 72.2
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.6e-41 171.0 126 71.4
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.3e-31 137.9 132 60.6
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.5e-28 127.9 123 61.0
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.5e-28 127.9 127 59.8
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 7.6e-22 107.5 125 48.0
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.1e-20 103.6 99 57.6
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.4e-20 103.2 134 47.8
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.2e-20 102.1 122 49.2
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.6e-19 99.8 126 50.0
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.6e-19 99.8 123 48.0
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 2.7e-19 99.0 137 45.3
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 2.7e-19 99.0 121 46.3
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 4.6e-19 98.2 121 46.3
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.0e-18 97.1 121 45.5
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.4e-18 96.7 137 44.5
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.4e-18 96.7 137 44.5
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.4e-18 96.7 136 47.1
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.8e-18 96.3 138 42.0
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.8e-18 96.3 122 45.9
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 2.3e-18 95.9 126 45.2
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 3.0e-18 95.5 122 46.7
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 3.9e-18 95.1 132 43.2
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 3.9e-18 95.1 117 47.0
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 5.1e-18 94.7 119 44.5
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.1e-18 94.7 122 46.7
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.8e-18 94.0 137 43.8
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 8.8e-18 94.0 117 46.2
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.1e-17 93.6 115 47.8
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.9e-17 92.8 135 40.0
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 1.9e-17 92.8 126 46.8
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 3.3e-17 92.0 122 46.7
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 4.3e-17 91.7 121 43.0
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 5.7e-17 91.3 122 45.1
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 7.4e-17 90.9 126 45.2
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 9.7e-17 90.5 126 42.9
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.3e-16 90.1 123 43.9
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 1.7e-16 89.7 118 46.6
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 1.7e-16 89.7 126 44.4
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 2.8e-16 89.0 128 43.0
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 3.7e-16 88.6 127 44.1
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 3.7e-16 88.6 126 42.1
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 6.3e-16 87.8 127 44.1
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 8.2e-16 87.4 146 39.7
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 8.2e-16 87.4 121 43.8
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 8.2e-16 87.4 133 45.1
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 8.2e-16 87.4 126 43.7
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.1e-15 87.0 129 45.0
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.4e-15 86.7 135 40.0
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.4e-15 86.7 120 44.2
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.8e-15 86.3 127 44.9
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.8e-15 86.3 134 41.8
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.4e-15 85.9 131 46.6
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 3.1e-15 85.5 123 43.1
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 5.3e-15 84.7 119 44.5
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 5.3e-15 84.7 126 41.3
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 9.1e-15 84.0 94 44.7
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.5e-14 83.2 133 41.4
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 1.5e-14 83.2 122 42.6
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-14 82.8 128 40.6
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 4.5e-14 81.6 126 42.1
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 5.9e-14 81.3 125 44.0
AT2G18200 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.7e-14 80.9 81 58.0
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 7.7e-14 80.9 129 40.3
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 7.7e-14 80.9 129 40.3
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 7.7e-14 80.9 129 40.3
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 7.7e-14 80.9 124 42.7
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.0e-13 80.5 129 43.4
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.0e-13 80.5 123 44.7
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 6.5e-13 77.8 126 42.9
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.5e-13 77.4 129 37.2
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.1e-12 77.0 131 39.7
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.9e-12 76.3 131 38.2
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.9e-12 76.3 112 42.0
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 2.5e-12 75.9 112 41.1
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.2e-12 75.5 131 40.5
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 4.2e-12 75.1 63 55.6
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 4.2e-12 75.1 119 41.2
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 5.5e-12 74.7 123 39.8
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 5.5e-12 74.7 123 39.8
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 5.5e-12 74.7 131 39.7
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 7.2e-12 74.3 128 35.9
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-12 74.3 130 38.5
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 7.2e-12 74.3 130 38.5
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 9.4e-12 73.9 136 37.5
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 1.2e-11 73.6 130 38.5
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 2.1e-11 72.8 110 40.9
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.7e-11 72.4 131 38.2
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 3.6e-11 72.0 135 40.0
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 4.7e-11 71.6 134 38.1
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 7.9e-11 70.9 129 38.8
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 7.9e-11 70.9 144 36.1
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.4e-10 70.1 125 36.8
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-10 69.3 130 34.6
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 2.3e-10 69.3 130 34.6
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 2.3e-10 69.3 130 34.6
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 6.7e-10 67.8 130 37.7
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.7e-10 67.8 123 39.8
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 6.7e-10 67.8 124 37.9
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.1e-09 67.0 129 37.2
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.5e-09 66.6 125 40.0
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.5e-09 66.6 116 33.6
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.5e-09 66.6 124 37.9
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 2.0e-09 66.2 124 39.5
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.6e-09 65.9 127 35.4
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.6e-09 65.9 130 33.1
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 2.6e-09 65.9 112 43.8
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.3e-09 65.5 114 40.4
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 4.4e-09 65.1 121 38.8
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 5.7e-09 64.7 119 34.5
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 5.7e-09 64.7 127 33.9
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 9.7e-09 63.9 100 40.0
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 9.7e-09 63.9 127 33.9
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 9.7e-09 63.9 122 37.7
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 9.7e-09 63.9 118 38.1
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 9.7e-09 63.9 122 38.5
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.3e-08 63.5 48 56.2
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.3e-08 63.5 119 37.8
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.3e-08 63.5 118 37.3
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.7e-08 63.2 129 33.3
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.7e-08 63.2 117 37.6
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 2.8e-08 62.4 137 33.6
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 6.3e-08 61.2 112 35.7
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 1.1e-07 60.5 62 54.8
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.4e-07 60.1 112 38.4
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 3.1e-07 58.9 114 39.5
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 4.1e-07 58.5 113 38.9
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 4.1e-07 58.5 120 36.7
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 7.0e-07 57.8 149 29.5
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 7.0e-07 57.8 99 38.4
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 7.0e-07 57.8 118 37.3
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 7.0e-07 57.8 97 38.1
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 9.1e-07 57.4 112 41.1
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.2e-06 57.0 118 35.6
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 1.5e-06 56.6 102 40.2
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.5e-06 56.6 81 42.0
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 2.0e-06 56.2 48 47.9
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 2.6e-06 55.8 46 47.8
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.6e-06 55.8 106 34.9
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 4.5e-06 55.1 37 56.8
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 5.9e-06 54.7 116 35.3
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 5.9e-06 54.7 116 35.3
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 7.7e-06 54.3 107 30.8


User provided reference genes

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