Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p61410 Brassica napus HOM05D007707 ORTHO05D009711 2.8e-42 174.9 87 100.0
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 1.1e-17 93.2 45 100.0
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 1.2e-16 89.7 43 97.7
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 2.0e-16 89.0 45 95.6
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 3.4e-16 88.2 42 97.6
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 3.4e-16 88.2 42 97.6
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 3.4e-16 88.2 44 95.5
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 3.4e-16 88.2 44 95.5
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 4.9e-15 84.3 43 97.7
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 2.4e-14 82.0 43 88.4
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 2.1e-13 79.0 42 90.5
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 2.1e-13 79.0 43 90.7
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 7.8e-13 77.0 45 86.7
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 9.6e-11 70.1 39 79.5
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 1.3e-10 69.7 39 79.5
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 2.1e-10 68.9 43 76.7
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 2.1e-10 68.9 39 84.6
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 2.8e-10 68.6 41 78.0
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 3.6e-10 68.2 36 80.6
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 4.8e-10 67.8 40 72.5
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 4.8e-10 67.8 36 80.6
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 4.8e-10 67.8 41 75.6
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 6.2e-10 67.4 41 73.2
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 6.2e-10 67.4 42 76.2
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 6.2e-10 67.4 41 75.6
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 8.1e-10 67.0 38 76.3
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 8.1e-10 67.0 36 83.3
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 1.1e-09 66.6 40 75.0
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 1.1e-09 66.6 37 83.8
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 1.1e-09 66.6 43 72.1
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 1.1e-09 66.6 37 75.7
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 1.4e-09 66.2 41 70.7
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 1.8e-09 65.9 41 75.6
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 1.8e-09 65.9 41 73.2
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 1.8e-09 65.9 37 78.4
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 1.8e-09 65.9 37 78.4
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 1.8e-09 65.9 37 78.4
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 2.4e-09 65.5 42 73.8
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 2.4e-09 65.5 36 77.8
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 2.4e-09 65.5 38 76.3
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 3.1e-09 65.1 41 73.2
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 4.0e-09 64.7 43 69.8
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 4.0e-09 64.7 43 69.8
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 4.0e-09 64.7 44 65.9
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 4.0e-09 64.7 42 69.0
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 5.3e-09 64.3 37 75.7
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 5.3e-09 64.3 36 75.0
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 5.3e-09 64.3 36 75.0
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 9.0e-09 63.5 41 70.7
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 9.0e-09 63.5 39 61.5
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 9.0e-09 63.5 41 70.7
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 9.0e-09 63.5 35 80.0
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 1.2e-08 63.2 36 75.0
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 1.5e-08 62.8 37 70.3
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 2.0e-08 62.4 37 75.7
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 2.0e-08 62.4 36 77.8
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 2.6e-08 62.0 36 69.4
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 2.6e-08 62.0 36 77.8
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 3.4e-08 61.6 41 68.3
SalBow2G3201 Salvia bowleyana HOM05D007707 ORTHO05D009711 3.4e-08 61.6 43 65.1
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 4.4e-08 61.2 40 75.0
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 4.4e-08 61.2 41 73.2
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 4.4e-08 61.2 41 73.2
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 7.6e-08 60.5 37 64.9
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 7.6e-08 60.5 37 67.6
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 9.9e-08 60.1 36 72.2
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 9.9e-08 60.1 37 70.3
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 1.7e-07 59.3 42 61.9
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 2.9e-07 58.5 37 64.9
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 2.9e-07 58.5 34 73.5
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 3.8e-07 58.2 40 65.0
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 4.9e-07 57.8 35 71.4
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 1.1e-06 56.6 37 70.3
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 1.1e-06 56.6 37 64.9
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 2.4e-06 55.5 36 63.9
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 2.4e-06 55.5 43 51.2
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 5.4e-06 54.3 35 65.7
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 9.3e-06 53.5 36 63.9


User provided reference genes

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