Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-125 453.0 277 100.0
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 2.3e-122 442.6 277 97.8
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.5e-102 376.7 285 88.1
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 3.5e-99 365.5 286 86.7
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 7.4e-65 251.5 306 61.1
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 4.5e-62 242.3 297 59.9
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 8.5e-61 238.0 299 63.2
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.1e-59 233.4 305 61.0
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.3e-58 230.7 302 57.6
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.8e-55 220.3 296 54.7
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 4.5e-54 215.7 270 59.6
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 2.2e-53 213.4 267 57.7
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.1e-52 211.1 270 60.4
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 1.2e-35 154.5 227 56.8
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-35 154.5 227 56.8
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 2.1e-35 153.7 276 51.4
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.0e-34 151.4 301 43.5
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 5.7e-33 145.6 268 49.6
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 5.7e-33 145.6 266 48.9
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 9.7e-33 144.8 266 49.2
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.7e-32 144.1 306 45.4
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 6.3e-32 142.1 269 52.8
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 6.3e-32 142.1 275 43.3
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.1e-31 141.4 267 52.4
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.1e-31 141.4 267 52.4
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 5.3e-31 139.0 284 46.1
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.7e-29 134.0 314 47.5
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 6.5e-29 132.1 326 43.6
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 5.5e-28 129.0 286 40.9
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 4.7e-27 125.9 286 40.6
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.8e-26 122.1 319 42.6
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 3.4e-25 119.8 255 45.1
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.3e-24 117.9 310 43.9
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 3.1e-23 113.2 276 38.4
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 7.0e-23 112.1 274 38.3
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.3e-21 107.8 213 45.5
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.6e-19 100.9 317 37.9
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.4e-18 97.8 335 35.5
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.3e-18 97.1 314 34.1
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.3e-18 97.1 305 33.8
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 4.0e-18 96.3 327 30.6
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 4.4e-17 92.8 205 42.0
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.7e-16 90.9 318 36.5
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 2.8e-16 90.1 317 32.8
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 8.3e-16 88.6 304 30.9
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.4e-15 87.8 311 31.8
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.6e-14 84.3 307 31.6
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 2.9e-13 80.1 295 32.9
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 8.6e-13 78.6 309 30.1
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.1e-12 78.2 306 36.6
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.1e-12 78.2 304 29.3
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 3.3e-12 76.6 303 38.6
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 3.3e-12 76.6 334 33.8
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.3e-12 76.6 325 30.2
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 3.3e-12 76.6 273 32.2
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 7.3e-12 75.5 289 31.1
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 7.3e-12 75.5 318 29.6
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.1e-11 73.9 306 30.1
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.1e-11 73.9 306 30.1
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.8e-11 73.6 308 29.2
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 2.8e-11 73.6 302 31.8
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 2.8e-11 73.6 311 34.1
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.8e-11 73.6 311 34.1
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.8e-11 73.6 311 34.1
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 2.8e-11 73.6 306 30.4
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 2.8e-11 73.6 303 30.0
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 4.7e-11 72.8 293 29.7
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 4.7e-11 72.8 293 29.7
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 4.7e-11 72.8 275 29.1
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.4e-10 71.2 317 29.3
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.3e-10 70.5 311 34.7
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 3.0e-10 70.1 305 30.5
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.0e-10 69.7 134 58.2
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 4.0e-10 69.7 311 34.1
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 6.8e-10 68.9 302 27.8
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 8.9e-10 68.6 304 29.9
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.9e-10 68.6 306 33.7
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 1.2e-09 68.2 326 32.5
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.2e-09 68.2 271 32.5
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.5e-09 67.8 306 33.7
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.5e-09 67.8 311 27.7
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 2.0e-09 67.4 327 34.9
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 2.0e-09 67.4 304 28.9
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 2.6e-09 67.0 306 38.2
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 2.6e-09 67.0 324 28.7
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 4.4e-09 66.2 311 28.6
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 5.7e-09 65.9 327 29.4
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.5e-09 65.5 306 34.3
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 9.8e-09 65.1 307 28.7
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 9.8e-09 65.1 307 28.7
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 9.8e-09 65.1 311 34.4
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.3e-08 64.7 313 33.9
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.3e-08 64.7 313 34.2
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.7e-08 64.3 323 28.2
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.2e-08 63.9 183 33.3
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 3.7e-08 63.2 164 37.2
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.9e-08 62.8 305 31.8
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.4e-08 62.4 313 29.4
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 8.3e-08 62.0 315 29.5
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 8.3e-08 62.0 317 31.5
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 8.3e-08 62.0 271 29.5
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 8.3e-08 62.0 301 28.2
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.1e-07 61.6 303 32.3
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.4e-07 61.2 311 36.3
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.1e-07 59.7 312 29.2
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 4.1e-07 59.7 287 29.6
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 4.1e-07 59.7 191 32.5
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.2e-06 58.2 278 30.6
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.2e-06 58.2 285 28.4
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.6e-06 57.8 307 27.4
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 2.0e-06 57.4 287 29.3
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.0e-06 57.4 311 27.3
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 3.5e-06 56.6 305 27.9


User provided reference genes

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