Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p60610 Brassica napus HOM05D003525 ORTHO05D019487 8.4e-105 383.6 187 100.0
BcaB03g11830 Brassica carinata HOM05D003525 ORTHO05D004578 3.2e-35 152.5 294 38.1
Sp7g32280 Schrenkiella parvula HOM05D003525 ORTHO05D004578 2.0e-34 149.8 298 37.9
Thhalv10025082m.g Eutrema salsugineum HOM05D003525 ORTHO05D004578 4.6e-34 148.7 298 38.3
C03p85740 Brassica napus HOM05D003525 ORTHO05D004578 7.8e-34 147.9 298 37.2
BolC3t20862H Brassica oleracea HOM05D003525 ORTHO05D004578 7.8e-34 147.9 298 37.2
A08p16780 Brassica napus HOM05D003525 ORTHO05D004578 1.0e-33 147.5 298 36.9
BraA08t33643Z Brassica rapa HOM05D003525 ORTHO05D004578 1.0e-33 147.5 298 36.9
AT4G34490 Arabidopsis thaliana HOM05D003525 ORTHO05D004578 2.3e-33 146.4 294 38.1
A01p03970 Brassica napus HOM05D003525 ORTHO05D004578 2.3e-33 146.4 296 38.2
BolC1t00417H Brassica oleracea HOM05D003525 ORTHO05D004578 2.3e-33 146.4 296 38.2
BraA01t00384Z Brassica rapa HOM05D003525 ORTHO05D004578 2.3e-33 146.4 296 38.2
BolC7t46490H Brassica oleracea HOM05D003525 ORTHO05D019487 3.0e-33 146.0 76 94.7
BcaNung06262 Brassica carinata HOM05D003525 ORTHO05D004578 5.0e-33 145.2 296 38.9
Carub.0007s0581 Capsella rubella HOM05D003525 ORTHO05D004578 1.5e-32 143.7 295 37.3
BcaC01g00903 Brassica carinata HOM05D003525 ORTHO05D004578 1.9e-32 143.3 298 36.2
C01p04280 Brassica napus HOM05D003525 ORTHO05D004578 1.9e-32 143.3 296 37.8
CARHR242770 Cardamine hirsuta HOM05D003525 ORTHO05D004578 1.9e-32 143.3 298 37.2
AL7G16740 Arabidopsis lyrata HOM05D003525 ORTHO05D004578 4.7e-31 138.7 311 35.7
THA.LOC104807320 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 7.5e-29 131.3 298 35.2
Peaxi162Scf00016g00826 Petunia axillaris HOM05D003525 ORTHO05D004578 2.2e-28 129.8 260 37.3
Aa31LG2G16030 Aethionema arabicum HOM05D003525 ORTHO05D004578 6.4e-28 128.3 299 35.5
THA.LOC104819606 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 6.4e-28 128.3 300 35.3
Aa31LG8G13620 Aethionema arabicum HOM05D003525 ORTHO05D004578 1.6e-26 123.6 297 35.0
Cpa.g.sc62.144 Carica papaya HOM05D003525 ORTHO05D004578 5.6e-24 115.2 295 32.2
PGR142G1190 Punica granatum HOM05D003525 ORTHO05D004578 5.6e-24 115.2 302 31.8
Atru.chr5.3008 Acer truncatum HOM05D003525 ORTHO05D004578 7.3e-24 114.8 300 33.0
Sabra04G0102300 Salix brachista HOM05D003525 ORTHO05D004578 9.5e-24 114.4 292 33.2
Nitab4.5_0000308g0040 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.2e-23 114.0 299 32.1
Nitab4.5_0005152g0050 Nicotiana tabacum HOM05D003525 ORTHO05D004578 2.8e-23 112.8 299 31.4
Peaxi162Scf00003g01338 Petunia axillaris HOM05D003525 ORTHO05D004578 2.8e-23 112.8 296 31.8
DCAR_028988 Daucus carota HOM05D003525 ORTHO05D004578 4.7e-23 112.1 290 31.0
HanXRQChr13g0410301 Helianthus annuus HOM05D003525 ORTHO05D004578 4.7e-23 112.1 291 31.3
Dinv23526 Davidia involucrata HOM05D003525 ORTHO05D004578 6.2e-23 111.7 275 32.7
QL11p043469 Quercus lobata HOM05D003525 ORTHO05D004578 6.2e-23 111.7 295 30.8
CAN.G1412.2 Capsicum annuum HOM05D003525 ORTHO05D004578 8.1e-23 111.3 300 31.3
AUR62011328 Chenopodium quinoa HOM05D003525 ORTHO05D004578 8.1e-23 111.3 263 34.2
Migut.N01237 Erythranthe guttata HOM05D003525 ORTHO05D004578 8.1e-23 111.3 281 33.1
Potri.004G153900 Populus trichocarpa HOM05D003525 ORTHO05D004578 1.1e-22 110.9 292 31.8
SalBow6G0296 Salvia bowleyana HOM05D003525 ORTHO05D004578 1.1e-22 110.9 299 33.4
SalBow6G6569 Salvia bowleyana HOM05D003525 ORTHO05D004578 1.1e-22 110.9 299 33.4
Thecc.02G086000 Theobroma cacao HOM05D003525 ORTHO05D004578 1.1e-22 110.9 297 32.0
Glyma.11G118300 Glycine max HOM05D003525 ORTHO05D004578 1.8e-22 110.2 293 32.8
Gohir.D13G033000 Gossypium hirsutum HOM05D003525 ORTHO05D004578 1.8e-22 110.2 296 31.8
Cfa005008 Carpinus fangiana HOM05D003525 ORTHO05D004578 3.1e-22 109.4 297 31.3
Duzib132G0954 Durio zibethinus HOM05D003525 ORTHO05D004578 3.1e-22 109.4 297 31.3
SGA_v2.0_scaffold58G20536 Striga asiatica HOM05D003525 ORTHO05D004578 4.0e-22 109.0 304 32.2
arahy.Tifrunner.gnm1.ann1.19SFKA Arachis hypogaea HOM05D003525 ORTHO05D004578 5.2e-22 108.6 72 76.4
arahy.Tifrunner.gnm1.ann1.92AS0N Arachis hypogaea HOM05D003525 ORTHO05D004578 5.2e-22 108.6 292 31.2
arahy.Tifrunner.gnm1.ann1.PLG8VX Arachis hypogaea HOM05D003525 ORTHO05D004578 5.2e-22 108.6 72 76.4
arahy.Tifrunner.gnm1.ann1.WSY56D Arachis hypogaea HOM05D003525 ORTHO05D004578 5.2e-22 108.6 292 31.2
Haze_02380 Corylus avellana HOM05D003525 ORTHO05D004578 5.2e-22 108.6 297 31.0
PGSC0003DMG400033911 Solanum tuberosum HOM05D003525 ORTHO05D004578 5.2e-22 108.6 300 30.7
MSTRG.20085 Avicennia marina HOM05D003525 ORTHO05D004578 8.9e-22 107.8 299 31.8
AUR62016732 Chenopodium quinoa HOM05D003525 ORTHO05D004578 8.9e-22 107.8 261 32.6
ECA234G0118 Erigeron canadensis HOM05D003525 ORTHO05D004578 8.9e-22 107.8 299 30.8
Lsat_1_v5_gn_5_118620 Lactuca sativa HOM05D003525 ORTHO05D004578 8.9e-22 107.8 301 31.2
Lj1g0027431 Lotus japonicus HOM05D003525 ORTHO05D004578 8.9e-22 107.8 69 75.4
Potri.009G115500 Populus trichocarpa HOM05D003525 ORTHO05D004578 8.9e-22 107.8 293 32.4
unitig_22.g5174 Utricularia gibba HOM05D003525 ORTHO05D004578 8.9e-22 107.8 251 33.5
vmacro17495 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 8.9e-22 107.8 297 32.0
Nitab4.5_0001361g0240 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.2e-21 107.5 274 31.8
Duzib248G1434 Durio zibethinus HOM05D003525 ORTHO05D004578 1.5e-21 107.1 297 31.3
Gohir.A13G034600 Gossypium hirsutum HOM05D003525 ORTHO05D004578 1.5e-21 107.1 296 31.4
HanXRQChr10g0307161 Helianthus annuus HOM05D003525 ORTHO05D004578 2.0e-21 106.7 299 30.8
Sopen10g023030 Solanum pennellii HOM05D003525 ORTHO05D004578 2.0e-21 106.7 298 31.2
PSO541G1852 Papaver somniferum HOM05D003525 ORTHO05D004578 2.6e-21 106.3 71 74.6
Sopen01g051770 Solanum pennellii HOM05D003525 ORTHO05D004578 2.6e-21 106.3 298 30.5
Ca_20867_v3 Cicer arietinum L. HOM05D003525 ORTHO05D004578 3.4e-21 105.9 72 72.2
Migut.B00240 Erythranthe guttata HOM05D003525 ORTHO05D004578 4.4e-21 105.5 315 30.2
Gohir.D02G215300 Gossypium hirsutum HOM05D003525 ORTHO05D004578 4.4e-21 105.5 301 31.2
MBI16_g38644_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 4.4e-21 105.5 279 32.3
TWI31G1364 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 5.8e-21 105.1 72 75.0
TWI79G1197 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 5.8e-21 105.1 72 75.0
Solyc01g109580.4 Solanum lycopersicum HOM05D003525 ORTHO05D004578 7.5e-21 104.8 298 31.2
Duzib052G0238 Durio zibethinus HOM05D003525 ORTHO05D004578 9.8e-21 104.4 298 30.9
Glyma.12G043700 Glycine max HOM05D003525 ORTHO05D004578 9.8e-21 104.4 293 31.7
Lalb_Chr23g0265401 Lupinus albus HOM05D003525 ORTHO05D004578 9.8e-21 104.4 294 29.3
Ciclev10028340m.g Citrus clementina HOM05D003525 ORTHO05D004578 1.3e-20 104.0 304 30.6
Gorai.005G243200 Gossypium raimondii HOM05D003525 ORTHO05D004578 1.3e-20 104.0 301 31.6
Rhsim05G0074500 Rhododendron simsii HOM05D003525 ORTHO05D004578 1.3e-20 104.0 72 72.2
COL.COLO4_25923 Corchorus olitorius HOM05D003525 ORTHO05D004578 1.7e-20 103.6 294 29.9
Nitab4.5_0004172g0090 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.7e-20 103.6 72 75.0
Cc02_g17610 Coffea canephora HOM05D003525 ORTHO05D004578 2.2e-20 103.2 307 30.0
Sabra09G0088700 Salix brachista HOM05D003525 ORTHO05D004578 2.2e-20 103.2 71 73.2
PSO210G1867 Papaver somniferum HOM05D003525 ORTHO05D004578 2.9e-20 102.8 302 29.5
PSO675G1462 Papaver somniferum HOM05D003525 ORTHO05D004578 2.9e-20 102.8 71 73.2
PSO731G0006 Papaver somniferum HOM05D003525 ORTHO05D004578 2.9e-20 102.8 302 29.5
CANSAT01G0222 Cannabis sativa HOM05D003525 ORTHO05D004578 3.7e-20 102.4 299 29.1
HanXRQChr04g0127991 Helianthus annuus HOM05D003525 ORTHO05D004578 3.7e-20 102.4 294 30.3
Lj5A197T61 Lonicera japonica HOM05D003525 ORTHO05D004578 3.7e-20 102.4 292 28.8
Dinv42068 Davidia involucrata HOM05D003525 ORTHO05D004578 4.9e-20 102.1 72 70.8
Medtr4g069960 Medicago truncatula HOM05D003525 ORTHO05D004578 4.9e-20 102.1 72 70.8
TAR376G0071 Trochodendron aralioides HOM05D003525 ORTHO05D004578 4.9e-20 102.1 69 75.4
ECA236G3498 Erigeron canadensis HOM05D003525 ORTHO05D004578 6.4e-20 101.7 295 29.8
CiPaw.06G135700 Carya illinoinensis HOM05D003525 ORTHO05D004578 8.3e-20 101.3 72 70.8
Oeu020764.1 Olea europaea HOM05D003525 ORTHO05D004578 8.3e-20 101.3 72 69.4
VMungo1127G1959 Vigna mungo HOM05D003525 ORTHO05D004578 8.3e-20 101.3 72 70.8
GSVIVG01031961001 Vitis vinifera HOM05D003525 ORTHO05D004578 8.3e-20 101.3 72 70.8
Actinidia08229 Actinidia chinensis HOM05D003525 ORTHO05D019487 1.1e-19 100.9 72 70.8
Actinidia17817 Actinidia chinensis HOM05D003525 ORTHO05D004578 1.1e-19 100.9 72 70.8
Actinidia27898 Actinidia chinensis HOM05D003525 ORTHO05D004578 1.1e-19 100.9 72 70.8
TAR381G1436 Trochodendron aralioides HOM05D003525 ORTHO05D004578 1.1e-19 100.9 72 69.4
CiPaw.05G064000 Carya illinoinensis HOM05D003525 ORTHO05D004578 1.4e-19 100.5 72 70.8
Solyc10g051340.2 Solanum lycopersicum HOM05D003525 ORTHO05D004578 1.4e-19 100.5 72 70.8
ATR0733G133 Amborella trichopoda HOM05D003525 ORTHO05D004578 2.4e-19 99.8 72 70.8
Sed0023087 Sechium edule HOM05D003525 ORTHO05D004578 2.4e-19 99.8 72 72.2
CAN.G1.44 Capsicum annuum HOM05D003525 ORTHO05D004578 3.2e-19 99.4 72 69.4
Eucgr.I01265 Eucalyptus grandis HOM05D003525 ORTHO05D004578 3.2e-19 99.4 72 69.4
Manes.17G100700 Manihot esculenta HOM05D003525 ORTHO05D004578 3.2e-19 99.4 72 68.1
Phvul.011G045700 Phaseolus vulgaris HOM05D003525 ORTHO05D004578 3.2e-19 99.4 295 31.2
Aqoxy6G01092 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 4.1e-19 99.0 72 70.8
Manes.15G163700 Manihot esculenta HOM05D003525 ORTHO05D004578 5.4e-19 98.6 299 29.1
Sed0019550 Sechium edule HOM05D003525 ORTHO05D004578 5.4e-19 98.6 71 70.4
MELO3C020978.2 Cucumis melo HOM05D003525 ORTHO05D004578 9.2e-19 97.8 72 70.8
CsaV3_2G014670 Cucumis sativus L. HOM05D003525 ORTHO05D004578 9.2e-19 97.8 72 70.8
TAR628G1296 Trochodendron aralioides HOM05D003525 ORTHO05D004578 1.2e-18 97.4 72 69.4
Lalb_Chr08g0246641 Lupinus albus HOM05D003525 ORTHO05D004578 1.6e-18 97.1 296 28.7
Zm00001eb055650 Zea mays HOM05D003525 ORTHO05D004578 1.6e-18 97.1 72 70.8
MD10G1076900 Malus domestica HOM05D003525 ORTHO05D004578 2.1e-18 96.7 297 27.9
Gohir.A03G194200 Gossypium hirsutum HOM05D003525 ORTHO05D004578 3.5e-18 95.9 72 68.1
RcHm_v2.0_Chr6g0264151 Rosa chinensis HOM05D003525 ORTHO05D004578 3.5e-18 95.9 69 65.2
Sed0027089 Sechium edule HOM05D003525 ORTHO05D004578 3.5e-18 95.9 72 66.7
Hund06230 Selenicereus undatus HOM05D003525 ORTHO05D004578 3.5e-18 95.9 72 69.4
Zm00001eb215890 Zea mays HOM05D003525 ORTHO05D004578 3.5e-18 95.9 72 69.4
FAN27G1229 Fragaria x ananassa HOM05D003525 ORTHO05D004578 6.0e-18 95.1 297 28.3
Lsat_1_v5_gn_7_89340 Lactuca sativa HOM05D003525 ORTHO05D004578 6.0e-18 95.1 71 63.4
Zm00001eb040800 Zea mays HOM05D003525 ORTHO05D004578 6.0e-18 95.1 72 66.7
Aqoxy5G01649 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 7.8e-18 94.7 72 66.7
EL10Ac9g21728 Beta vulgaris HOM05D003525 ORTHO05D004578 7.8e-18 94.7 72 66.7
FvH4_2g08710 Fragaria vesca HOM05D003525 ORTHO05D004578 7.8e-18 94.7 69 63.8
FAN24G2203 Fragaria x ananassa HOM05D003525 ORTHO05D004578 7.8e-18 94.7 69 63.8
Os03g0722600 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 7.8e-18 94.7 72 69.4
Actinidia00521 Actinidia chinensis HOM05D003525 ORTHO05D004578 1.0e-17 94.4 72 66.7
ClCG11G004450 Citrullus lanatus HOM05D003525 ORTHO05D004578 1.0e-17 94.4 72 69.4
Mapoly0074s0004 Marchantia polymorpha HOM05D003525 ORTHO05D004578 1.0e-17 94.4 71 64.8
Sc18g0004490 Simmondsia chinensis HOM05D003525 ORTHO05D004578 1.0e-17 94.4 72 65.3
DCAR_022933 Daucus carota HOM05D003525 ORTHO05D004578 1.3e-17 94.0 72 68.1
ClCG02G005050 Citrullus lanatus HOM05D003525 ORTHO05D004578 1.7e-17 93.6 72 66.7
Nn1g05019 Nelumbo nucifera HOM05D003525 ORTHO05D004578 2.3e-17 93.2 72 63.9
FAN20G1110 Fragaria x ananassa HOM05D003525 ORTHO05D004578 3.0e-17 92.8 69 63.8
Lj9A369G67 Lonicera japonica HOM05D003525 ORTHO05D004578 3.0e-17 92.8 72 65.3
Prupe.8G097900 Prunus persica HOM05D003525 ORTHO05D004578 3.9e-17 92.4 69 62.3
MBI19_g07191_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 8.6e-17 91.3 72 65.3
MD05G1067200 Malus domestica HOM05D003525 ORTHO05D004578 1.5e-16 90.5 297 29.3
CsaV3_7G023520 Cucumis sativus L. HOM05D003525 ORTHO05D004578 1.9e-16 90.1 72 65.3
unitig_8.g3568 Utricularia gibba HOM05D003525 ORTHO05D004578 1.9e-16 90.1 71 63.4
Os08g0447900 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 2.5e-16 89.7 72 62.5
SMO174G0095 Selaginella moellendorffii HOM05D003525 ORTHO05D004578 3.3e-16 89.4 71 59.2
HPP92_017152 Vanilla planifolia HOM05D003525 ORTHO05D004578 3.3e-16 89.4 72 63.9
Nn5g29579 Nelumbo nucifera HOM05D003525 ORTHO05D004578 4.3e-16 89.0 72 63.9
HanXRQChr16g0505731 Helianthus annuus HOM05D003525 ORTHO05D004578 9.5e-16 87.8 70 60.0
Pp3c4_1720 Physcomitrium patens HOM05D003525 ORTHO05D004578 1.2e-15 87.4 71 62.0
CDE07G1879 Ceratophyllum demersum HOM05D003525 ORTHO05D004578 2.8e-15 86.3 70 61.4
Ah.01g019420 Amaranthus hybridus HOM05D003525 ORTHO05D004578 6.2e-15 85.1 287 28.9
SEGI_09930 Sequoiadendron giganteum HOM05D003525 ORTHO05D004578 8.1e-15 84.7 71 56.3
MBI16_g36558_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 6.8e-14 81.6 65 64.6
FAN15G1113 Fragaria x ananassa HOM05D003525 ORTHO05D004578 3.4e-13 79.3 68 55.9
CBR_g21060 Chara braunii HOM05D003525 ORTHO05D004578 6.4e-12 75.1 66 56.1
PGSC0003DMG400000723 Solanum tuberosum HOM05D003525 ORTHO05D004578 8.4e-12 74.7 44 79.5
BraA03t15369Z Brassica rapa HOM05D003525 ORTHO05D019487 1.1e-11 74.3 136 38.2
MELO3C012526.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.9e-11 73.6 229 28.8
Oeu003718.1 Olea europaea HOM05D003525 ORTHO05D004578 1.9e-11 73.6 41 75.6
Gorai.013G037400 Gossypium raimondii HOM05D003525 ORTHO05D004578 2.4e-11 73.2 38 84.2
CSS0028225 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 7.1e-11 71.6 79 55.7
Oeu029126.1 Olea europaea HOM05D003525 ORTHO05D004578 9.2e-11 71.2 37 81.1
CSS0001193 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 3.5e-10 69.3 36 77.8
A03p62940 Brassica napus HOM05D003525 ORTHO05D019487 1.3e-09 67.4 46 76.1
vmacro02112 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 1.1e-08 64.3 43 62.8
TPR.G333 Trifolium pratense HOM05D003525 ORTHO05D004578 1.5e-08 63.9 36 72.2
Psat7g184520 Pisum sativum HOM05D003525 ORTHO05D004578 3.3e-08 62.8 36 72.2
MELO3C014785.2 Cucumis melo HOM05D003525 ORTHO05D004578 7.3e-08 61.6 36 72.2
PRCOL_00002324 Prasinoderma coloniale HOM05D003525 ORTHO05D004578 1.8e-06 57.0 67 46.3
Nn2g12770 Nelumbo nucifera HOM05D003525 ORTHO05D019487 6.8e-06 55.1 36 75.0


User provided reference genes

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