Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p59890 Brassica napus HOM05D002412 ORTHO05D002516 1.2e-86 323.2 165 100.0
BolC7t46433H Brassica oleracea HOM05D002412 ORTHO05D002516 1.4e-82 309.7 159 99.4
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 5.4e-79 297.7 162 95.1
A03p62330 Brassica napus HOM05D002412 ORTHO05D002516 9.1e-79 297.0 159 96.2
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 6.5e-77 290.8 150 98.0
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 7.0e-71 270.8 153 91.5
BolC1t00474H Brassica oleracea HOM05D002412 ORTHO05D002516 3.9e-61 238.4 155 83.9
Sp7g31540 Schrenkiella parvula HOM05D002412 ORTHO05D002516 3.3e-60 235.3 155 80.6
C01p04900 Brassica napus HOM05D002412 ORTHO05D002516 4.3e-60 235.0 151 84.1
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 5.6e-60 234.6 151 84.1
Thhalv10026460m.g Eutrema salsugineum HOM05D002412 ORTHO05D002516 2.1e-59 232.6 158 78.5
BcaNung04670 Brassica carinata HOM05D002412 ORTHO05D002516 1.4e-58 229.9 159 83.0
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 3.1e-58 228.8 151 82.1
AT4G33800 Arabidopsis thaliana HOM05D002412 ORTHO05D002516 1.5e-52 209.9 157 77.7
BcaC09g52190 Brassica carinata HOM05D002412 ORTHO05D002516 9.5e-52 207.2 136 83.1
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 2.0e-49 199.5 159 73.0
Carub.0007s0663 Capsella rubella HOM05D002412 ORTHO05D002516 5.8e-49 198.0 161 72.0
AL7G17660 Arabidopsis lyrata HOM05D002412 ORTHO05D002516 1.7e-48 196.4 160 73.8
BcaC01g00964 Brassica carinata HOM05D002412 ORTHO05D002516 2.1e-43 179.5 162 66.0
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 3.8e-32 142.1 168 53.6
Aa31LG2G17080 Aethionema arabicum HOM05D002412 ORTHO05D002516 4.0e-26 122.1 156 55.1
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 8.1e-19 97.8 159 44.0
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 7.6e-17 91.3 168 41.7
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 1.1e-15 87.4 168 41.7
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 4.2e-15 85.5 161 39.8
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 4.2e-15 85.5 166 39.8
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 5.5e-15 85.1 162 40.1
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 5.5e-15 85.1 148 41.9
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 7.1e-15 84.7 159 42.8
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 9.3e-15 84.3 173 39.3
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 1.2e-14 84.0 162 43.2
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 1.2e-14 84.0 178 39.9
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 2.1e-14 83.2 159 39.6
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 2.7e-14 82.8 162 38.9
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.5e-14 82.4 168 35.7
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 3.5e-14 82.4 168 35.7
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 4.6e-14 82.0 161 41.0
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 4.6e-14 82.0 169 42.0
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 6.0e-14 81.6 162 39.5
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 6.0e-14 81.6 163 39.9
TPR.G21149 Trifolium pratense HOM05D002412 ORTHO05D002516 7.9e-14 81.3 158 41.1
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.8e-13 80.1 159 39.0
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.8e-13 80.1 162 40.7
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.3e-13 79.7 169 38.5
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 3.0e-13 79.3 164 40.2
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 3.9e-13 79.0 157 39.5
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.9e-13 79.0 168 35.1
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 5.1e-13 78.6 166 36.7
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 6.7e-13 78.2 169 37.3
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 8.7e-13 77.8 152 39.5
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 8.7e-13 77.8 160 42.5
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 1.1e-12 77.4 166 38.0
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.5e-12 77.0 159 39.6
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.9e-12 76.6 162 38.9
SalBow6G4199 Salvia bowleyana HOM05D002412 ORTHO05D002516 1.9e-12 76.6 171 35.1
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 1.9e-12 76.6 161 39.1
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.5e-12 76.3 167 38.9
Ah.01g007050 Amaranthus hybridus HOM05D002412 ORTHO05D002516 4.3e-12 75.5 168 38.7
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 5.6e-12 75.1 166 38.6
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 7.4e-12 74.7 166 39.2
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 7.4e-12 74.7 166 39.2
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 9.6e-12 74.3 154 41.6
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 9.6e-12 74.3 129 38.8
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 9.6e-12 74.3 175 37.1
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 9.6e-12 74.3 162 38.3
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 9.6e-12 74.3 155 39.4
VMungo0720G0862 Vigna mungo HOM05D002412 ORTHO05D002516 9.6e-12 74.3 165 40.0
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 1.3e-11 73.9 173 36.4
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.3e-11 73.9 157 40.1
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 1.3e-11 73.9 172 38.4
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 1.6e-11 73.6 165 38.8
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 1.6e-11 73.6 170 36.5
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 2.1e-11 73.2 168 38.7
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 4.8e-11 72.0 156 42.3
Psat6g214680 Pisum sativum HOM05D002412 ORTHO05D002516 6.2e-11 71.6 158 38.6
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 8.1e-11 71.2 157 40.1
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 8.1e-11 71.2 169 37.9
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.8e-10 70.1 176 39.2
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.8e-10 70.1 175 36.6
TWI59G0380 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.8e-10 70.1 174 37.4
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.4e-10 69.7 163 38.7
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.4e-10 69.7 169 37.9
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 3.1e-10 69.3 162 38.9
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 3.1e-10 69.3 175 36.6
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.1e-10 69.3 175 38.3
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 6.9e-10 68.2 172 37.8
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 9.0e-10 67.8 159 36.5
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 1.2e-09 67.4 169 36.7
BolC3t20931H Brassica oleracea HOM05D057568 ORTHO05D041454 1.5e-09 67.0 55 65.5
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.5e-09 67.0 167 38.9
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 1.5e-09 67.0 160 38.8
Ca_11030_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 2.0e-09 66.6 173 37.0
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 2.0e-09 66.6 165 36.4
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 2.0e-09 66.6 184 34.8
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.0e-09 66.6 163 36.8
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 2.6e-09 66.2 166 38.6
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 3.4e-09 65.9 163 37.4
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 3.4e-09 65.9 183 35.5
C03p86390 Brassica napus HOM05D057568 ORTHO05D041454 4.5e-09 65.5 78 51.3
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 4.5e-09 65.5 163 38.0
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 4.5e-09 65.5 130 40.8
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 4.5e-09 65.5 160 36.9
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 5.8e-09 65.1 167 35.3
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 5.8e-09 65.1 163 36.8
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 5.8e-09 65.1 171 34.5
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 7.6e-09 64.7 166 36.1
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 7.6e-09 64.7 167 38.9
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.0e-08 64.3 156 37.2
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 1.3e-08 63.9 161 36.0
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 1.3e-08 63.9 157 39.5
ECA236G2487 Erigeron canadensis HOM05D002412 ORTHO05D002516 1.7e-08 63.5 162 34.6
EL10Ac9g22186 Beta vulgaris HOM05D002412 ORTHO05D002516 2.2e-08 63.2 159 39.0
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 2.2e-08 63.2 134 40.3
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.2e-08 63.2 167 35.9
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 2.2e-08 63.2 175 34.9
MSTRG.20224 Avicennia marina HOM05D002412 ORTHO05D002516 2.9e-08 62.8 176 33.0
Ca_24361_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 2.9e-08 62.8 127 44.1
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 3.8e-08 62.4 168 33.9
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 4.9e-08 62.0 167 34.1
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 4.9e-08 62.0 156 39.1
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 4.9e-08 62.0 135 38.5
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 4.9e-08 62.0 177 33.9
AUR62022466 Chenopodium quinoa HOM05D002412 ORTHO05D002516 8.4e-08 61.2 156 34.0
Cc10_g05040 Coffea canephora HOM05D002412 ORTHO05D002516 8.4e-08 61.2 139 36.7
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 8.4e-08 61.2 158 39.2
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 1.1e-07 60.8 156 34.0
DCAR_029176 Daucus carota HOM05D002412 ORTHO05D002516 1.1e-07 60.8 164 32.3
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 1.1e-07 60.8 177 37.9
Sp2g05130 Schrenkiella parvula HOM05D014607 ORTHO05D016575 1.1e-07 60.8 158 33.5
AUR62041661 Chenopodium quinoa HOM05D002412 ORTHO05D002516 1.4e-07 60.5 163 36.2
CsaV3_2G026020 Cucumis sativus L. HOM05D002412 ORTHO05D002516 1.9e-07 60.1 152 36.8
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 1.9e-07 60.1 139 40.3
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 2.5e-07 59.7 144 36.8
Eucgr.I01046 Eucalyptus grandis HOM05D002412 ORTHO05D002516 2.5e-07 59.7 174 36.2
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 2.5e-07 59.7 166 38.0
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 3.2e-07 59.3 157 37.6
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 7.1e-07 58.2 166 33.7
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 7.1e-07 58.2 154 39.0
Hund05293 Selenicereus undatus HOM05D002412 ORTHO05D002516 7.1e-07 58.2 80 45.0
TAR633G1602 Trochodendron aralioides HOM05D002412 ORTHO05D002516 7.1e-07 58.2 78 48.7
MELO3C010796.2 Cucumis melo HOM05D002412 ORTHO05D002516 9.3e-07 57.8 167 34.1
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 9.3e-07 57.8 165 36.4
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 9.3e-07 57.8 173 33.5
Thhalv10023721m.g Eutrema salsugineum HOM05D014607 ORTHO05D016575 1.6e-06 57.0 154 32.5
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 1.6e-06 57.0 158 32.9
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 2.1e-06 56.6 134 37.3
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 2.7e-06 56.2 169 35.5
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 2.7e-06 56.2 156 37.2
Medtr5g005230 Medicago truncatula HOM05D002412 ORTHO05D002516 2.7e-06 56.2 166 34.9
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.7e-06 56.2 163 35.0
Peaxi162Scf00003g00288 Petunia axillaris HOM05D002412 ORTHO05D002516 2.7e-06 56.2 136 36.0
Sabra16G0182100 Salix brachista HOM05D002412 ORTHO05D002516 2.7e-06 56.2 170 34.7
Sc15g0005620 Simmondsia chinensis HOM05D002412 ORTHO05D002516 2.7e-06 56.2 134 35.8
unitig_0.g1046 Utricularia gibba HOM05D002412 ORTHO05D002516 2.7e-06 56.2 135 38.5
ATR0739G138 Amborella trichopoda HOM05D002412 ORTHO05D002516 3.5e-06 55.8 120 40.8
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 3.5e-06 55.8 161 35.4
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 3.5e-06 55.8 175 33.1
Oeu037507.3 Olea europaea HOM05D006761 ORTHO05D002516 3.5e-06 55.8 154 35.1
CiPaw.06G164900 Carya illinoinensis HOM05D002412 ORTHO05D002516 4.6e-06 55.5 167 32.9
Medtr1g017890 Medicago truncatula HOM05D002412 ORTHO05D002516 4.6e-06 55.5 161 34.8
Rhsim05G0092300 Rhododendron simsii HOM05D002412 ORTHO05D002516 6.0e-06 55.1 133 39.1
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 6.0e-06 55.1 125 37.6
unitig_8.g4872 Utricularia gibba HOM05D002412 ORTHO05D002516 6.0e-06 55.1 132 35.6
vmacro01953 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 6.0e-06 55.1 158 36.7
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 7.9e-06 54.7 150 37.3


User provided reference genes

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