Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 2.6e-49 198.4 98 100.0
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 3.5e-46 188.0 98 94.9
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 3.5e-46 188.0 98 94.9
BcaNung02175 Brassica carinata HOM05D010996 ORTHO05D009840 1.0e-45 186.4 96 95.8
A01p04810 Brassica napus HOM05D010996 ORTHO05D009840 1.7e-40 169.1 98 85.7
BolC7t46412H Brassica oleracea HOM05D010996 ORTHO05D009840 1.7e-40 169.1 88 95.5
BraA01t00464Z Brassica rapa HOM05D010996 ORTHO05D009840 1.7e-40 169.1 98 85.7
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 9.4e-39 163.3 100 85.0
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 1.6e-38 162.5 100 85.0
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 1.6e-38 162.5 100 85.0
Sp7g31170 Schrenkiella parvula HOM05D010996 ORTHO05D009840 1.5e-36 156.0 100 80.0
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 1.1e-31 139.8 102 67.6
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 5.5e-31 137.5 93 77.4
AL7G18090 Arabidopsis lyrata HOM05D010996 ORTHO05D009840 1.6e-30 136.0 100 67.0
CARHR241540 Cardamine hirsuta HOM05D010996 ORTHO05D009840 4.7e-30 134.4 101 68.3
Carub.0007s0701 Capsella rubella HOM05D010996 ORTHO05D009840 4.4e-28 127.9 102 64.7
BcaNung05339 Brassica carinata HOM05D000119 ORTHO05D000054 1.1e-20 103.2 88 67.0
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 2.8e-11 72.0 93 47.3
Aa31sc146G10 Aethionema arabicum HOM05D010996 ORTHO05D009840 1.1e-10 70.1 54 68.5
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 5.4e-10 67.8 99 42.4
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 1.6e-09 66.2 91 46.2
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 2.0e-09 65.9 104 44.2
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 2.7e-09 65.5 88 46.6
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 3.5e-09 65.1 93 50.5
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 4.5e-09 64.7 95 42.1
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 5.9e-09 64.3 98 43.9
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 1.0e-08 63.5 100 45.0
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 1.3e-08 63.2 89 40.4
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 1.7e-08 62.8 92 46.7
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 3.8e-08 61.6 95 42.1
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 1.1e-07 60.1 92 39.1
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 1.1e-07 60.1 101 42.6
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 1.5e-07 59.7 101 41.6
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 2.5e-07 58.9 100 43.0
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 2.5e-07 58.9 95 41.1
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 4.2e-07 58.2 99 44.4
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 4.2e-07 58.2 94 41.5
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 5.5e-07 57.8 97 45.4
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 5.5e-07 57.8 97 43.3
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 7.2e-07 57.4 97 44.3
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 9.4e-07 57.0 94 41.5
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 1.6e-06 56.2 92 42.4
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 1.6e-06 56.2 90 40.0
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 1.6e-06 56.2 99 40.4
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 2.7e-06 55.5 56 53.6
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 2.7e-06 55.5 71 42.3
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 3.6e-06 55.1 93 41.9
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 6.1e-06 54.3 98 49.0
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 6.1e-06 54.3 107 35.5
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 8.0e-06 53.9 89 40.4
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 8.0e-06 53.9 89 41.6


User provided reference genes

Program Settings