Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 8.9e-198 693.3 334 100.0
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 8.9e-198 693.3 334 100.0
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 2.3e-190 668.7 334 97.3
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 9.9e-173 610.1 344 89.5
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 3.5e-170 601.7 345 89.0
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 4.6e-154 548.1 352 79.5
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 2.6e-149 532.3 332 81.3
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 6.7e-145 517.7 351 78.3
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 3.7e-143 511.9 327 79.2
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 6.2e-143 511.1 351 77.8
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 1.1e-142 510.4 357 74.5
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 1.4e-142 510.0 359 74.7
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 3.1e-142 508.8 355 76.6
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 3.1e-142 508.8 355 76.6
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 4.0e-142 508.4 357 74.8
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 3.8e-132 475.3 353 71.1
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 1.3e-124 450.3 332 69.6
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 1.0e-105 387.5 296 64.9
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 2.0e-104 383.3 319 62.1
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 2.0e-104 383.3 326 60.7
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.6e-104 382.9 326 60.4
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.8e-103 379.4 325 60.3
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 3.7e-103 379.0 295 65.4
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 8.2e-103 377.9 277 68.6
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 8.2e-103 377.9 298 64.1
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 1.4e-102 377.1 291 63.6
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.2e-101 374.0 277 67.1
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 2.0e-101 373.2 290 65.2
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 2.0e-101 373.2 291 64.3
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 1.7e-100 370.2 293 61.8
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.9e-100 369.4 275 66.9
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 5.0e-100 368.6 232 73.3
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.0e-100 368.6 232 73.3
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.0e-100 368.6 232 73.3
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 8.5e-100 367.9 209 79.4
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 1.9e-99 366.7 289 63.7
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 3.2e-99 365.9 324 58.0
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 4.2e-99 365.5 205 80.0
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 9.4e-99 364.4 287 63.8
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 1.2e-98 364.0 288 63.2
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.2e-98 364.0 205 81.0
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 1.6e-98 363.6 203 80.3
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 1.6e-98 363.6 268 64.6
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 6.1e-98 361.7 235 71.5
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 6.1e-98 361.7 325 57.8
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 6.1e-98 361.7 219 76.7
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 6.1e-98 361.7 346 56.1
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 1.0e-97 360.9 231 72.3
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 1.8e-97 360.1 312 59.3
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 1.8e-97 360.1 313 58.5
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 2.3e-97 359.8 312 59.3
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 2.3e-97 359.8 300 60.7
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 3.0e-97 359.4 243 70.0
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.5e-96 357.1 227 70.9
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.5e-96 357.1 273 63.7
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 9.8e-96 354.4 293 61.1
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 2.8e-95 352.8 206 78.6
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 3.7e-95 352.4 243 67.9
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 6.3e-95 351.7 346 54.9
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 6.3e-95 351.7 226 72.1
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 6.3e-95 351.7 220 73.2
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 6.3e-95 351.7 206 77.2
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 8.3e-95 351.3 220 73.2
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 1.1e-94 350.9 204 77.5
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 1.1e-94 350.9 209 76.6
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 1.1e-94 350.9 206 76.7
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 2.4e-94 349.7 228 71.9
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 2.4e-94 349.7 206 77.2
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.1e-94 349.4 235 69.8
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 9.1e-94 347.8 207 75.4
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 1.6e-93 347.1 285 59.6
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 2.7e-93 346.3 278 61.5
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 2.7e-93 346.3 206 76.7
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 3.5e-93 345.9 227 71.8
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 3.5e-93 345.9 202 77.7
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 5.9e-93 345.1 224 71.9
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 1.0e-92 344.4 231 69.3
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.0e-92 344.4 265 64.5
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.0e-92 344.4 296 59.8
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 1.0e-92 344.4 286 59.4
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.3e-92 344.0 207 75.4
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.2e-92 343.2 226 69.5
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 3.8e-92 342.4 208 76.4
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 3.8e-92 342.4 205 75.1
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 5.0e-92 342.0 254 65.4
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 5.0e-92 342.0 206 76.7
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 5.0e-92 342.0 194 78.4
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 1.1e-91 340.9 206 75.7
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 1.9e-91 340.1 202 76.2
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 5.5e-91 338.6 204 75.5
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 7.2e-91 338.2 283 59.0
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.6e-90 337.0 206 74.8
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 1.6e-90 337.0 278 61.5
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 2.7e-90 336.3 165 91.5
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 2.7e-90 336.3 289 59.5
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 3.6e-90 335.9 206 75.2
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 3.6e-90 335.9 284 58.1
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 4.7e-90 335.5 285 58.2
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 1.0e-89 334.3 280 60.7
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 1.8e-89 333.6 204 74.5
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.3e-89 333.2 219 70.8
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 6.8e-89 331.6 265 63.0
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 3.4e-88 329.3 194 77.8
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 3.4e-88 329.3 194 77.3
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 7.5e-88 328.2 202 74.3
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 7.5e-88 328.2 254 63.8
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 7.5e-88 328.2 226 68.1
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 9.8e-88 327.8 207 72.5
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 1.3e-87 327.4 203 72.9
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 2.2e-87 326.6 275 58.9
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.9e-87 325.5 204 70.6
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.9e-87 325.5 299 54.8
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.1e-86 322.8 299 54.8
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 1.2e-85 320.9 240 64.2
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 6.6e-84 315.1 271 58.3
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 4.0e-81 305.8 217 62.7
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 8.9e-81 304.7 205 67.8
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.1e-78 297.7 231 57.6
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 1.0e-76 291.2 227 60.8
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 5.8e-72 275.4 312 46.8
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.7e-71 273.9 226 56.2
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 3.2e-70 269.6 162 72.2
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 8.9e-65 251.5 136 83.8
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 2.6e-64 250.0 160 68.1
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 5.8e-64 248.8 151 71.5
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 3.7e-63 246.1 234 53.4
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 2.4e-62 243.4 168 70.2
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 5.4e-62 242.3 144 75.0
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 5.2e-57 225.7 207 53.1
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 1.2e-50 204.5 124 71.0
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 1.9e-46 190.7 152 61.2
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 7.8e-45 185.3 178 48.9
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 3.3e-43 179.9 156 55.1
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 5.8e-32 142.5 111 55.9
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 3.8e-23 113.2 83 55.4
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 9.6e-19 98.6 52 86.5
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 1.6e-18 97.8 184 41.3
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.4e-17 94.7 87 59.8
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 5.5e-14 82.8 70 60.0
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 9.3e-14 82.0 45 88.9
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 4.6e-13 79.7 124 42.7
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 6.1e-13 79.3 50 76.0
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 1.8e-09 67.8 43 72.1
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 3.8e-07 60.1 69 47.8
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 3.2e-06 57.0 37 62.2


User provided reference genes

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