Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 1.6e-99 365.9 168 100.0
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 1.6e-99 365.9 168 100.0
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.2e-97 359.8 168 98.2
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.2e-97 359.8 168 98.2
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 2.0e-97 359.0 168 98.2
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 2.6e-97 358.6 168 97.6
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 3.4e-97 358.2 168 97.6
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 4.4e-97 357.8 178 94.4
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 9.9e-97 356.7 168 97.0
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 4.9e-96 354.4 168 96.4
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 6.4e-96 354.0 168 95.8
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 6.4e-96 354.0 168 96.4
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 3.2e-95 351.7 168 95.8
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.8e-90 335.9 168 91.1
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.2e-89 333.2 168 91.7
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 5.6e-76 287.7 136 95.6
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 2.6e-73 278.9 126 98.4
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 7.1e-71 270.8 168 75.0
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 9.3e-71 270.4 168 72.6
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 2.1e-70 269.2 168 72.0
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 3.5e-70 268.5 168 72.6
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 71.3
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 1.0e-69 266.9 168 71.4
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.3e-69 266.5 168 72.0
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.8e-69 266.2 168 71.4
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 3.0e-69 265.4 168 70.2
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 3.0e-69 265.4 168 70.8
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 3.0e-69 265.4 168 70.8
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 3.9e-69 265.0 168 71.4
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.5e-68 263.1 168 70.8
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 1.9e-68 262.7 168 72.0
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 2.5e-68 262.3 168 71.4
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 2.5e-68 262.3 168 71.4
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.3e-68 261.9 168 72.0
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.3e-68 261.9 168 72.0
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 3.3e-68 261.9 168 72.0
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 70.2
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 72.0
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 5.7e-68 261.2 168 70.8
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 1.6e-67 259.6 168 69.0
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.1e-67 259.2 168 70.8
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 6.3e-67 257.7 168 69.6
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 6.3e-67 257.7 168 69.6
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 6.3e-67 257.7 168 68.5
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 8.2e-67 257.3 168 70.2
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 8.2e-67 257.3 168 69.0
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.1e-66 256.9 168 68.5
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.8e-66 256.1 168 68.5
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.8e-66 256.1 168 70.2
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 2.4e-66 255.8 165 69.7
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 6.9e-66 254.2 168 69.0
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 68.5
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 68.5
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.5e-65 253.1 165 69.1
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 1.5e-65 253.1 168 69.6
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 2.6e-65 252.3 168 69.0
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 2.6e-65 252.3 168 69.0
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 2.6e-65 252.3 175 68.6
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 2.2e-64 249.2 165 70.3
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 3.8e-64 248.4 168 68.5
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 1.1e-63 246.9 167 67.1
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 1.1e-63 246.9 168 67.9
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.4e-63 246.5 168 67.3
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 1.9e-63 246.1 167 67.1
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 2.5e-63 245.7 165 65.5
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 3.2e-63 245.4 168 66.7
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 4.2e-63 245.0 168 66.1
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 5.5e-63 244.6 168 65.5
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 7.2e-63 244.2 168 67.3
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 7.2e-63 244.2 168 67.3
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 9.3e-63 243.8 167 65.3
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.7e-62 242.3 165 68.5
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.7e-62 242.3 168 66.1
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 6.1e-62 241.1 168 63.7
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.0e-61 240.4 168 64.3
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.3e-61 240.0 168 64.3
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 1.3e-61 240.0 168 66.7
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.8e-61 239.6 168 63.7
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.0e-61 238.8 167 62.9
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 3.9e-61 238.4 168 63.7
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.1e-61 238.0 167 63.5
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 6.7e-61 237.7 167 62.9
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 6.7e-61 237.7 168 64.3
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.9e-60 236.1 168 64.9
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 1.9e-60 236.1 168 64.9
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 4.3e-60 235.0 168 66.1
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 4.3e-60 235.0 168 66.1
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 7.4e-60 234.2 168 67.3
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 1.3e-59 233.4 190 59.5
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.3e-59 233.4 220 52.3
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.2e-59 232.6 168 63.7
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 2.8e-59 232.3 165 64.2
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 4.8e-59 231.5 160 63.8
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 4.8e-59 231.5 168 63.7
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 4.8e-59 231.5 165 65.5
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 4.1e-58 228.4 168 61.3
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.2e-57 226.9 180 58.3
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.0e-56 223.8 168 61.3
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.3e-56 223.4 190 57.9
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.2e-56 222.6 168 62.5
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.1e-55 220.3 167 61.1
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.5e-55 219.2 165 61.8
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 2.1e-54 216.1 204 52.5
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 3.6e-54 215.3 168 57.7
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.4e-53 213.4 190 54.2
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 1.8e-53 213.0 167 60.5
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.8e-50 203.0 126 69.8
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 4.1e-50 201.8 131 66.4
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 9.1e-50 200.7 138 66.7
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-48 196.8 176 52.3
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 2.9e-48 195.7 183 58.5
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 8.5e-48 194.1 167 56.3
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.0e-45 187.2 179 49.2
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.3e-45 186.0 168 51.8
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 8.8e-45 184.1 168 52.4
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.5e-44 183.3 127 64.6
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.1e-42 177.2 165 53.3
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 9.1e-42 174.1 116 66.4
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.0e-41 172.9 168 51.2
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 5.5e-39 164.9 166 49.4
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.4e-37 160.2 165 50.3
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 1.4e-37 160.2 179 45.8
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 1.8e-37 159.8 168 48.8
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 3.0e-37 159.1 165 50.3
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 3.0e-37 159.1 169 47.3
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.5e-36 154.5 151 52.3
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.5e-36 154.5 147 52.4
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.7e-35 153.3 99 71.7
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.7e-35 153.3 117 60.7
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.8e-35 152.5 135 52.6
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 2.8e-35 152.5 131 59.5
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.7e-35 152.1 134 53.0
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.9e-33 144.8 131 51.9
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 8.5e-32 141.0 98 63.3
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 8.5e-32 141.0 98 63.3
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 7.2e-31 137.9 128 49.2
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 2.6e-28 129.4 98 60.2
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 8.5e-24 114.4 165 37.6
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 9.4e-23 110.9 165 36.4
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 3.6e-22 109.0 98 58.2
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 3.6e-22 109.0 78 61.5
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.4e-21 107.1 127 40.9
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 3.0e-21 105.9 111 49.5
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.2e-20 104.0 95 52.6
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 1.0e-16 90.9 75 58.7
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 1.1e-15 87.4 42 100.0
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 7.3e-15 84.7 41 97.6
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 2.1e-14 83.2 170 32.4
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-13 80.5 65 55.4
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-13 80.5 65 55.4
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.3e-13 79.7 68 52.9
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.0e-12 76.6 117 32.5
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.6e-12 76.3 60 56.7
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.4e-12 75.5 104 37.5
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.7e-11 73.6 65 52.3
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.7e-11 72.4 65 50.8
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.9e-11 72.0 60 55.0
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 1.4e-10 70.5 170 31.2
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 2.7e-09 66.2 130 33.1
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 1.7e-08 63.5 45 60.0
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.5e-07 59.7 83 36.1
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 4.7e-06 55.5 40 62.5


User provided reference genes

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