Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.6e-68 262.7 138 100.0
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.6e-68 262.7 138 100.0
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 1.1e-64 250.0 137 95.6
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 3.2e-61 238.4 137 92.7
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 3.2e-61 238.4 137 92.7
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 1.1e-58 229.9 138 88.4
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 1.8e-51 206.1 144 79.2
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.8e-51 206.1 140 82.9
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 2.4e-48 195.7 136 80.1
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 2.4e-48 195.7 136 80.1
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 4.1e-48 194.9 135 78.5
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 1.2e-47 193.4 139 79.9
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 4.5e-47 191.4 138 76.8
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 6.5e-46 187.6 138 76.8
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 6.5e-46 187.6 138 76.8
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 9.4e-45 183.7 135 76.3
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 5.7e-42 174.5 143 67.8
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 1.3e-41 173.3 141 72.3
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 1.7e-25 119.8 139 51.8
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 1.9e-21 106.3 99 55.6
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 2.5e-21 105.9 141 47.5
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 1.4e-19 100.1 128 51.6
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 3.1e-19 99.0 96 54.2
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 3.4e-18 95.5 137 45.3
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 5.8e-18 94.7 136 47.1
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 7.5e-18 94.4 102 52.0
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 7.5e-18 94.4 142 46.5
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 9.8e-18 94.0 97 53.6
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 1.7e-17 93.2 94 54.3
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 2.9e-17 92.4 95 56.8
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 3.7e-17 92.0 99 51.5
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 3.7e-17 92.0 142 45.1
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 4.9e-17 91.7 93 55.9
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 4.9e-17 91.7 93 55.9
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 6.4e-17 91.3 92 54.3
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.4e-16 90.1 93 54.8
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 1.4e-16 90.1 93 54.8
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 1.9e-16 89.7 144 44.4
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 1.9e-16 89.7 141 45.4
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 2.4e-16 89.4 125 47.2
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 2.4e-16 89.4 92 53.3
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 3.2e-16 89.0 142 45.1
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 3.2e-16 89.0 91 52.7
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 5.4e-16 88.2 109 50.5
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 5.4e-16 88.2 137 44.5
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 7.0e-16 87.8 98 54.1
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 1.6e-15 86.7 94 51.1
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 2.0e-15 86.3 93 52.7
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 2.7e-15 85.9 133 47.4
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 4.6e-15 85.1 94 51.1
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 4.6e-15 85.1 145 42.1
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 6.0e-15 84.7 96 47.9
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 1.0e-14 84.0 114 47.4
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 1.0e-14 84.0 103 48.5
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 1.7e-14 83.2 137 43.8
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 2.3e-14 82.8 146 41.1
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 3.0e-14 82.4 99 47.5
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 3.0e-14 82.4 120 43.3
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 8.6e-14 80.9 96 45.8
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 8.6e-14 80.9 134 41.8
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 1.2e-12 77.0 97 48.5
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 1.2e-12 77.0 98 44.9
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 1.2e-12 77.0 98 44.9
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 1.6e-12 76.6 83 54.2
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 1.6e-12 76.6 168 39.3
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 2.1e-12 76.3 95 47.4
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 2.8e-12 75.9 83 54.2
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 2.8e-12 75.9 96 44.8
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 3.6e-12 75.5 95 48.4
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 6.2e-12 74.7 126 43.7
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 6.2e-12 74.7 169 38.5
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 8.1e-12 74.3 147 39.5
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 1.1e-11 73.9 139 40.3
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 1.4e-11 73.6 84 50.0
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 3.1e-11 72.4 138 42.0
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-11 72.0 101 43.6
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 4.0e-11 72.0 91 44.0
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 4.0e-11 72.0 94 44.7
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 5.2e-11 71.6 141 37.6
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 6.8e-11 71.2 83 49.4
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 2.0e-10 69.7 94 43.6
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 2.6e-10 69.3 87 48.3
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 4.4e-10 68.6 103 39.8
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 9.8e-10 67.4 85 52.9
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 1.3e-09 67.0 131 38.9
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 1.7e-09 66.6 110 40.9
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 1.7e-09 66.6 105 40.0
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 2.2e-09 66.2 131 39.7
BcaB03g12705 Brassica carinata HOM05D007435 ORTHO05D009338 6.4e-09 64.7 43 79.1
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 1.4e-08 63.5 85 48.2
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 1.9e-08 63.2 96 41.7
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 1.9e-08 63.2 58 51.7
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 9.2e-08 60.8 51 60.8
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 9.2e-08 60.8 97 37.1
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 1.2e-07 60.5 102 40.2
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 1.2e-07 60.5 92 42.4
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 1.2e-07 60.5 109 39.4
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 1.2e-07 60.5 110 38.2
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 1.6e-07 60.1 70 52.9
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 1.0e-06 57.4 110 35.5
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 2.3e-06 56.2 74 43.2


User provided reference genes

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