Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04135 Brassica carinata HOM05D004099 ORTHO05D004777 9.7e-97 357.1 215 100.0
C07p58690 Brassica napus HOM05D004099 ORTHO05D004777 9.7e-97 357.1 215 100.0
BolC7t46319H Brassica oleracea HOM05D004099 ORTHO05D004777 5.5e-92 341.3 209 99.0
A03p60800 Brassica napus HOM05D004099 ORTHO05D004777 1.5e-84 316.6 216 90.7
BraA03t15116Z Brassica rapa HOM05D004099 ORTHO05D004777 1.5e-84 316.6 216 90.7
BcaNung04134 Brassica carinata HOM05D004099 ORTHO05D004777 1.6e-75 286.6 218 85.3
Sp7g29350 Schrenkiella parvula HOM05D004099 ORTHO05D004777 3.6e-67 258.8 226 79.6
Thhalv10026165m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 1.8e-66 256.5 233 77.7
A08p18580 Brassica napus HOM05D004099 ORTHO05D004777 3.8e-61 238.8 221 72.4
C03p87870 Brassica napus HOM05D004099 ORTHO05D004777 4.3e-60 235.3 221 72.4
BolC3t21102H Brassica oleracea HOM05D004099 ORTHO05D004777 4.3e-60 235.3 221 72.4
BcaC01g01082 Brassica carinata HOM05D004099 ORTHO05D004777 1.2e-59 233.8 221 72.4
BcaB03g12702 Brassica carinata HOM05D004099 ORTHO05D004777 1.4e-58 230.3 231 69.3
BraA08t33820Z Brassica rapa HOM05D004099 ORTHO05D004777 1.4e-58 230.3 221 71.0
AL7G20550 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 2.0e-54 216.5 212 68.4
CARHR239380 Cardamine hirsuta HOM05D004099 ORTHO05D004777 5.0e-53 211.8 215 72.6
AT4G31510 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 8.0e-51 204.5 210 70.0
BcaNung01519 Brassica carinata HOM05D004099 ORTHO05D004777 7.0e-47 191.4 122 93.4
Sp4g03550 Schrenkiella parvula HOM05D004099 ORTHO05D004777 1.8e-42 176.8 220 59.5
BraA09t41015Z Brassica rapa HOM05D004099 ORTHO05D004777 3.4e-41 172.6 223 53.8
A09p56190 Brassica napus HOM05D004099 ORTHO05D004777 4.9e-40 168.7 223 52.9
A04p18910 Brassica napus HOM05D004099 ORTHO05D004777 1.1e-39 167.5 224 54.9
CARHR117460 Cardamine hirsuta HOM05D004099 ORTHO05D004777 1.9e-39 166.8 209 62.7
AL4G15100 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 7.1e-39 164.9 216 60.6
BcaNung04136 Brassica carinata HOM05D004099 ORTHO05D004777 6.0e-38 161.8 121 81.0
BcaC07g40919 Brassica carinata HOM05D004099 ORTHO05D004777 6.6e-37 158.3 221 51.1
BcaC07g40920 Brassica carinata HOM05D004099 ORTHO05D004777 6.6e-37 158.3 221 50.7
C08p39160 Brassica napus HOM05D004099 ORTHO05D004777 6.6e-37 158.3 221 51.1
BolC8t51489H Brassica oleracea HOM05D004099 ORTHO05D004777 6.6e-37 158.3 221 51.1
Thhalv10000300m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 1.5e-36 157.1 170 67.6
Aa31LG2G18840 Aethionema arabicum HOM05D004099 ORTHO05D004777 5.6e-36 155.2 216 61.6
BcaB06g27983 Brassica carinata HOM05D004099 ORTHO05D004777 5.6e-36 155.2 222 54.5
BcaC02g08443 Brassica carinata HOM05D004099 ORTHO05D004777 5.6e-36 155.2 222 54.5
C04p54150 Brassica napus HOM05D004099 ORTHO05D004777 5.6e-36 155.2 222 54.5
Aa31LG7G12320 Aethionema arabicum HOM05D004099 ORTHO05D004777 9.5e-36 154.5 223 54.3
BraA04t17493Z Brassica rapa HOM05D004099 ORTHO05D004777 1.2e-35 154.1 227 50.7
AT2G24550 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 2.1e-35 153.3 215 54.0
BcaB06g27984 Brassica carinata HOM05D004099 ORTHO05D004777 2.8e-35 152.9 224 53.6
BolC4t26967H Brassica oleracea HOM05D004099 ORTHO05D004777 4.7e-35 152.1 222 54.1
Carub.0007s0905 Capsella rubella HOM05D004099 ORTHO05D004777 5.2e-34 148.7 230 53.5
THA.LOC104803870 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 1.5e-33 147.1 225 53.8
Carub.0004s0391 Capsella rubella HOM05D004099 ORTHO05D004777 2.6e-33 146.4 222 58.6
THA.LOC104819932 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 3.8e-32 142.5 164 61.0
Thhalv10029499m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 4.7e-27 125.6 171 52.0
Sabra06G0211400 Salix brachista HOM05D004099 ORTHO05D004777 1.1e-23 114.4 217 46.5
Gohir.D06G107300 Gossypium hirsutum HOM05D004099 ORTHO05D004777 2.3e-21 106.7 140 53.6
Gorai.010G122000 Gossypium raimondii HOM05D004099 ORTHO05D004777 2.3e-21 106.7 140 53.6
Duzib168G0203 Durio zibethinus HOM05D004099 ORTHO05D004777 3.9e-21 105.9 156 50.6
Gohir.A05G063600 Gossypium hirsutum HOM05D004099 ORTHO05D004777 3.9e-21 105.9 153 51.6
Gohir.A06G105200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 3.9e-21 105.9 149 50.3
Cpa.g.sc23.25 Carica papaya HOM05D004099 ORTHO05D004777 6.6e-21 105.1 155 54.2
Duzib150G0962 Durio zibethinus HOM05D004099 ORTHO05D004777 1.5e-20 104.0 150 48.7
THA.LOC104814974 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 2.5e-20 103.2 128 60.2
Potri.018G008200 Populus trichocarpa HOM05D004099 ORTHO05D004777 4.3e-20 102.4 188 46.3
Gohir.D05G066200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 1.6e-19 100.5 153 54.2
Manes.03G004500 Manihot esculenta HOM05D004099 ORTHO05D004777 1.6e-19 100.5 165 53.3
Sabra18G0015300 Salix brachista HOM05D004099 ORTHO05D004777 3.6e-19 99.4 148 45.3
Gorai.009G067000 Gossypium raimondii HOM05D004099 ORTHO05D004777 8.1e-19 98.2 153 53.6
THA.LOC104803325 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 8.1e-19 98.2 153 46.4
Thhalv10004845m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 5.3e-18 95.5 184 44.0
BcaB04g19804 Brassica carinata HOM05D004099 ORTHO05D004777 9.0e-18 94.7 143 49.7
BcaB04g19805 Brassica carinata HOM05D004099 ORTHO05D004777 9.0e-18 94.7 143 49.7
Psat0s1810g0040 Pisum sativum HOM05D004099 ORTHO05D004777 1.2e-17 94.4 128 50.8
Thecc.09G008200 Theobroma cacao HOM05D004099 ORTHO05D004777 1.2e-17 94.4 142 54.2
TPR.G34393 Trifolium pratense HOM05D004099 ORTHO05D004777 1.2e-17 94.4 106 55.7
Atru.chr7.2654 Acer truncatum HOM05D004099 ORTHO05D004777 1.5e-17 94.0 104 58.7
FAN20G2786 Fragaria x ananassa HOM05D004099 ORTHO05D004777 1.5e-17 94.0 152 42.8
FAN15G2474 Fragaria x ananassa HOM05D004099 ORTHO05D004777 3.4e-17 92.8 152 42.1
FAN27G1673 Fragaria x ananassa HOM05D004099 ORTHO05D004777 4.5e-17 92.4 152 42.1
Medtr3g108910 Medicago truncatula HOM05D004099 ORTHO05D004777 4.5e-17 92.4 132 50.0
Manes.16G135100 Manihot esculenta HOM05D004099 ORTHO05D004777 5.8e-17 92.0 100 58.0
Carub.0006s2274 Capsella rubella HOM05D004099 ORTHO05D004777 7.6e-17 91.7 86 64.0
MELO3C011183.2 Cucumis melo HOM05D004099 ORTHO05D004777 7.6e-17 91.7 124 50.8
CARHR188560 Cardamine hirsuta HOM05D004099 ORTHO05D004777 1.7e-16 90.5 101 58.4
Sp2g22560 Schrenkiella parvula HOM05D004099 ORTHO05D004777 2.2e-16 90.1 232 39.2
Ca_15654_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 3.8e-16 89.4 125 48.0
Ca_15662_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 3.8e-16 89.4 125 48.0
C09p07050 Brassica napus HOM05D004099 ORTHO05D004777 4.9e-16 89.0 141 51.8
arahy.Tifrunner.gnm1.ann1.EP35YN Arachis hypogaea HOM05D004099 ORTHO05D004777 6.4e-16 88.6 86 60.5
A09p06360 Brassica napus HOM05D004099 ORTHO05D004777 6.4e-16 88.6 139 56.1
Glyma.06G077200 Glycine max HOM05D004099 ORTHO05D004777 6.4e-16 88.6 123 54.5
Lalb_Chr22g0361221 Lupinus albus HOM05D004099 ORTHO05D004777 6.4e-16 88.6 166 47.6
MD08G1127700 Malus domestica HOM05D004099 ORTHO05D004777 6.4e-16 88.6 96 59.4
MD15G1107100 Malus domestica HOM05D004099 ORTHO05D004777 6.4e-16 88.6 157 48.4
Glyma.17G197700 Glycine max HOM05D004099 ORTHO05D004777 8.4e-16 88.2 89 59.6
AL6G36570 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 1.1e-15 87.8 85 62.4
AT5G24890 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 1.1e-15 87.8 85 62.4
CsaV3_2G031340 Cucumis sativus L. HOM05D004099 ORTHO05D004777 1.1e-15 87.8 124 50.0
QL12p025350 Quercus lobata HOM05D004099 ORTHO05D004777 1.1e-15 87.8 87 59.8
BcaC04g23565 Brassica carinata HOM05D004099 ORTHO05D004777 1.9e-15 87.0 141 51.8
C07p42870 Brassica napus HOM05D004099 ORTHO05D004777 1.9e-15 87.0 88 60.2
BolC7t44814H Brassica oleracea HOM05D004099 ORTHO05D004777 1.9e-15 87.0 88 60.2
BolC9t53621H Brassica oleracea HOM05D004099 ORTHO05D004777 1.9e-15 87.0 141 51.8
VMungo0647G0898 Vigna mungo HOM05D004099 ORTHO05D004777 1.9e-15 87.0 86 62.8
arahy.Tifrunner.gnm1.ann1.4Y0EX5 Arachis hypogaea HOM05D004099 ORTHO05D004777 2.4e-15 86.7 86 58.1
arahy.Tifrunner.gnm1.ann1.HHIB1Q Arachis hypogaea HOM05D004099 ORTHO05D004777 2.4e-15 86.7 86 58.1
FvH4_2g36700 Fragaria vesca HOM05D004099 ORTHO05D004777 2.4e-15 86.7 152 44.7
Aa31LG11G4090 Aethionema arabicum HOM05D004099 ORTHO05D004777 3.2e-15 86.3 149 46.3
Phvul.001G059700 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 3.2e-15 86.3 86 61.6
Psat6g032840 Pisum sativum HOM05D004099 ORTHO05D004777 3.2e-15 86.3 102 54.9
TPR.G11970 Trifolium pratense HOM05D004099 ORTHO05D004777 3.2e-15 86.3 97 54.6
Medtr1g009640 Medicago truncatula HOM05D004099 ORTHO05D004777 4.2e-15 85.9 128 50.8
ClCG05G026470 Citrullus lanatus HOM05D004099 ORTHO05D004777 5.4e-15 85.5 154 49.4
Lj1g0009765 Lotus japonicus HOM05D004099 ORTHO05D004777 5.4e-15 85.5 130 46.9
Prupe.1G459400 Prunus persica HOM05D004099 ORTHO05D004777 5.4e-15 85.5 93 58.1
BraA02t08969Z Brassica rapa HOM05D004099 ORTHO05D004777 7.1e-15 85.1 137 41.6
BraA09t36281Z Brassica rapa HOM05D004099 ORTHO05D004777 7.1e-15 85.1 139 55.4
Sed0004011 Sechium edule HOM05D004099 ORTHO05D004777 7.1e-15 85.1 131 48.9
BcaB07g29925 Brassica carinata HOM05D004099 ORTHO05D004777 2.1e-14 83.6 87 58.6
Lalb_Chr11g0064161 Lupinus albus HOM05D004099 ORTHO05D004777 2.1e-14 83.6 127 46.5
VMungo1309G2218 Vigna mungo HOM05D004099 ORTHO05D004777 2.1e-14 83.6 82 59.8
A06p35670 Brassica napus HOM05D004099 ORTHO05D004777 2.7e-14 83.2 137 52.6
BraA06t26492Z Brassica rapa HOM05D004099 ORTHO05D004777 2.7e-14 83.2 137 52.6
MELO3C003623.2 Cucumis melo HOM05D004099 ORTHO05D004777 2.7e-14 83.2 153 43.1
CsaV3_3G047130 Cucumis sativus L. HOM05D004099 ORTHO05D004777 2.7e-14 83.2 85 57.6
arahy.Tifrunner.gnm1.ann1.DC2GX7 Arachis hypogaea HOM05D004099 ORTHO05D004777 3.5e-14 82.8 82 59.8
PSO063G2706 Papaver somniferum HOM05D004099 ORTHO05D004777 3.5e-14 82.8 84 59.5
PSO170G2883 Papaver somniferum HOM05D004099 ORTHO05D004777 3.5e-14 82.8 84 59.5
TWI34G1482 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 3.5e-14 82.8 87 55.2
CANSAT25G3311 Cannabis sativa HOM05D004099 ORTHO05D004777 4.6e-14 82.4 84 57.1
Phvul.009G101800 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 4.6e-14 82.4 83 59.0
Lalb_Chr23g0269151 Lupinus albus HOM05D004099 ORTHO05D004777 6.0e-14 82.0 127 45.7
BcaNung05898 Brassica carinata HOM05D004099 ORTHO05D004777 1.0e-13 81.3 143 45.5
Actinidia06428 Actinidia chinensis HOM05D004099 ORTHO05D004777 1.3e-13 80.9 150 41.3
BolC2t12055H Brassica oleracea HOM05D004099 ORTHO05D004777 1.3e-13 80.9 138 41.3
GSVIVG01035514001 Vitis vinifera HOM05D000139 ORTHO05D003082 1.8e-13 80.5 132 40.9
Glyma.04G076000 Glycine max HOM05D004099 ORTHO05D004777 2.3e-13 80.1 99 53.5
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 2.3e-13 80.1 99 50.5
Actinidia22257 Actinidia chinensis HOM05D004099 ORTHO05D004777 3.0e-13 79.7 86 55.8
CiPaw.07G211800 Carya illinoinensis HOM05D004099 ORTHO05D004777 3.9e-13 79.3 87 57.5
BcaC03g17940 Brassica carinata HOM05D004099 ORTHO05D004777 6.7e-13 78.6 137 40.9
A02p40050 Brassica napus HOM05D004099 ORTHO05D004777 6.7e-13 78.6 137 40.9
C02p60010 Brassica napus HOM05D004099 ORTHO05D004777 6.7e-13 78.6 137 40.9
Sed0009150 Sechium edule HOM05D004099 ORTHO05D004777 8.7e-13 78.2 82 57.3
Ah.12g061250 Amaranthus hybridus HOM05D004099 ORTHO05D004777 1.5e-12 77.4 99 48.5
ClCG08G012630 Citrullus lanatus HOM05D004099 ORTHO05D004777 1.5e-12 77.4 121 46.3
CSS0016285 Camellia sinensis var. sinensis HOM05D004099 ORTHO05D004777 1.9e-12 77.0 146 48.6
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 1.9e-12 77.0 86 58.1
HPP92_010785 Vanilla planifolia HOM05D004099 ORTHO05D004777 3.3e-12 76.3 128 47.7
Ciclev10009036m.g Citrus clementina HOM05D004099 ORTHO05D004777 5.6e-12 75.5 84 59.5
PGR044G2369 Punica granatum HOM05D004099 ORTHO05D004777 7.4e-12 75.1 140 47.9
Potri.006G273100 Populus trichocarpa HOM05D004099 ORTHO05D004777 9.6e-12 74.7 152 43.4
EL10Ac2g02414 Beta vulgaris HOM05D004099 ORTHO05D004777 1.6e-11 73.9 100 50.0
GSVIVG01012477001 Vitis vinifera HOM05D004099 ORTHO05D004777 2.8e-11 73.2 93 49.5
TWI63G1022 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 3.6e-11 72.8 87 51.7
RcHm_v2.0_Chr6g0305061 Rosa chinensis HOM05D004099 ORTHO05D004777 1.1e-10 71.2 91 53.8
CiPaw.08G020400 Carya illinoinensis HOM05D004099 ORTHO05D004777 2.4e-10 70.1 60 65.0
HPP92_017131 Vanilla planifolia HOM05D004099 ORTHO05D004777 2.4e-10 70.1 73 58.9
Peaxi162Scf00288g00911 Petunia axillaris HOM05D004099 ORTHO05D004777 2.6e-09 66.6 86 48.8
Os08g0516900 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 7.6e-09 65.1 54 66.7
Zm00001eb174750 Zea mays HOM05D002359 ORTHO05D002394 7.6e-09 65.1 91 50.5
ATR0580G260 Amborella trichopoda HOM05D002359 ORTHO05D002394 4.9e-08 62.4 121 40.5
SGA_v2.0_scaffold193G40664 Striga asiatica HOM05D004099 ORTHO05D004777 4.9e-08 62.4 114 39.5
MBI16_g09343_MAGBIO Magnolia biondii HOM05D002359 ORTHO05D002394 6.4e-08 62.0 134 38.8
Oeu018566.1 Olea europaea HOM05D004099 ORTHO05D004777 6.4e-08 62.0 62 56.5
Os09g0499000 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 6.4e-08 62.0 66 60.6
HPP92_010298 Vanilla planifolia HOM05D002359 ORTHO05D002394 8.4e-08 61.6 67 55.2
CDE07G1514 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 1.4e-07 60.8 103 37.9
Solyc08g068970.3 Solanum lycopersicum HOM05D004099 ORTHO05D004777 1.9e-07 60.5 85 47.1
AL5G21890 Arabidopsis lyrata HOM05D002359 ORTHO05D002394 3.2e-07 59.7 87 41.4
CDE06G0466 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 3.2e-07 59.7 60 51.7
Zm00001eb035860 Zea mays HOM05D002359 ORTHO05D002394 3.2e-07 59.7 81 49.4
HPP92_015829 Vanilla planifolia HOM05D002359 ORTHO05D002394 4.2e-07 59.3 66 56.1
MSTRG.11808 Avicennia marina HOM05D004099 ORTHO05D004777 5.5e-07 58.9 63 55.6
Os06g0698748 Oryza sativa ssp. japonica HOM05D004099 ORTHO05D004777 7.1e-07 58.5 71 47.9
Zm00001eb317350 Zea mays HOM05D002359 ORTHO05D002394 7.1e-07 58.5 151 38.4
Haze_07997 Corylus avellana HOM05D004099 ORTHO05D004777 9.3e-07 58.2 74 51.4
Sopen08g022630 Solanum pennellii HOM05D004099 ORTHO05D004777 9.3e-07 58.2 79 49.4
Zm00001eb273070 Zea mays HOM05D004099 ORTHO05D002394 9.3e-07 58.2 53 54.7
Haze_07991 Corylus avellana HOM05D004099 ORTHO05D004777 1.6e-06 57.4 74 51.4
Nitab4.5_0000502g0140 Nicotiana tabacum HOM05D004099 ORTHO05D004777 1.6e-06 57.4 50 64.0
ATR0598G330 Amborella trichopoda HOM05D002359 ORTHO05D002394 2.1e-06 57.0 103 40.8
CDE04G2528 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 2.1e-06 57.0 58 50.0
Oeu040387.1 Olea europaea HOM05D004099 ORTHO05D004777 2.1e-06 57.0 61 54.1
Peaxi162Scf00288g00109 Petunia axillaris HOM05D004099 ORTHO05D004777 2.1e-06 57.0 66 54.5
PGSC0003DMG400035805 Solanum tuberosum HOM05D004099 ORTHO05D004777 2.1e-06 57.0 66 53.0
Aqoxy7G02919 Aquilegia oxysepala HOM05D002359 ORTHO05D002394 3.5e-06 56.2 125 40.0
THA.LOC104810954 Tarenaya hassleriana HOM05D002359 ORTHO05D002394 3.5e-06 56.2 55 49.1
THA.LOC104815089 Tarenaya hassleriana HOM05D002359 ORTHO05D002394 3.5e-06 56.2 86 39.5
QL11p000753 Quercus lobata HOM05D002359 ORTHO05D002394 4.6e-06 55.8 56 50.0
Migut.A00433 Erythranthe guttata HOM05D004099 ORTHO05D004777 6.0e-06 55.5 92 39.1
AagrBONN_evm.TU.Sc2ySwM_117.1257 Anthoceros agrestis HOM05D002359 ORTHO05D002394 7.9e-06 55.1 52 53.8
Hma1.2p1_0179F.1_g079530 Hydrangea macrophylla HOM05D002359 ORTHO05D002394 7.9e-06 55.1 121 35.5


User provided reference genes

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