Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p58400 Brassica napus HOM05D005782 ORTHO05D007436 1.4e-148 529.6 267 100.0
BolC7t46295H Brassica oleracea HOM05D005782 ORTHO05D007436 4.2e-142 508.1 269 97.0
BcaNung02727 Brassica carinata HOM05D005782 ORTHO05D007436 1.6e-125 453.0 319 78.7
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 9.8e-115 417.2 335 70.7
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 1.7e-114 416.4 334 70.7
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 1.7e-114 416.4 334 70.7
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 6.3e-114 414.5 334 70.4
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 8.3e-114 414.1 335 70.1
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 4.6e-112 408.3 335 69.3
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 2.5e-110 402.5 337 70.0
Thhalv10025215m.g Eutrema salsugineum HOM05D005782 ORTHO05D007436 3.3e-110 402.1 338 67.5
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 5.6e-110 401.4 334 66.8
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 9.5e-110 400.6 337 66.8
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 3.1e-108 395.6 337 66.8
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 2.0e-107 392.9 338 66.6
THA.LOC104803572 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 3.1e-92 342.4 334 58.7
A03p60520 Brassica napus HOM05D005782 ORTHO05D007436 1.7e-87 326.6 233 76.8
BraA03t15091Z Brassica rapa HOM05D005782 ORTHO05D007436 1.7e-87 326.6 233 76.8
Aa31LG2G19280 Aethionema arabicum HOM05D005782 ORTHO05D007436 3.3e-86 322.4 317 59.3
Sed0017765 Sechium edule HOM05D005782 ORTHO05D007436 3.2e-81 305.8 339 52.8
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 1.2e-80 303.9 340 52.6
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 2.1e-80 303.1 326 52.5
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 3.0e-79 299.3 343 52.5
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 3.0e-79 299.3 316 53.5
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 6.6e-79 298.1 339 51.3
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 1.1e-78 297.4 350 51.7
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 1.9e-78 296.6 340 51.2
Manes.05G205900 Manihot esculenta HOM05D005782 ORTHO05D007436 2.5e-78 296.2 336 53.3
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 3.3e-78 295.8 329 51.4
GSVIVG01032240001 Vitis vinifera HOM05D005782 ORTHO05D007436 4.3e-78 295.4 338 51.8
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 4.8e-77 292.0 356 48.6
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 6.2e-77 291.6 343 51.3
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 1.8e-76 290.0 356 48.6
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 2.4e-76 289.7 340 50.3
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 2.4e-76 289.7 350 50.9
EL10Ac3g05861 Beta vulgaris HOM05D005782 ORTHO05D007436 3.1e-76 289.3 349 50.1
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 3.1e-76 289.3 341 52.5
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 3.1e-76 289.3 340 48.5
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 4.0e-76 288.9 337 49.3
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 1.2e-75 287.3 336 53.0
Eucgr.C02158 Eucalyptus grandis HOM05D005782 ORTHO05D007436 1.2e-75 287.3 334 51.2
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 2.6e-75 286.2 332 51.5
Prupe.1G002100 Prunus persica HOM05D005782 ORTHO05D007436 4.4e-75 285.4 324 50.9
Actinidia07556 Actinidia chinensis HOM05D005782 ORTHO05D007436 1.7e-74 283.5 340 51.2
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 1.7e-74 283.5 336 49.4
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 4.9e-74 282.0 332 51.2
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 1.1e-73 280.8 342 50.9
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 1.4e-73 280.4 396 44.7
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 1.9e-73 280.0 326 50.3
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.4e-73 279.6 324 50.0
Ah.13g066690 Amaranthus hybridus HOM05D005782 ORTHO05D007436 4.2e-73 278.9 339 50.7
CANSAT80G1379 Cannabis sativa HOM05D005782 ORTHO05D007436 2.1e-72 276.6 345 49.9
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 2.7e-72 276.2 328 49.1
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 2.7e-72 276.2 334 50.3
Gorai.009G000300 Gossypium raimondii HOM05D005782 ORTHO05D007436 3.5e-72 275.8 334 50.3
Sabra06G0060600 Salix brachista HOM05D005782 ORTHO05D007436 3.5e-72 275.8 386 46.4
Lj2g0003070 Lotus japonicus HOM05D005782 ORTHO05D007436 4.6e-72 275.4 341 47.8
Cc06_g23670 Coffea canephora HOM05D005782 ORTHO05D007436 7.9e-72 274.6 341 48.7
Gohir.D05G000500 Gossypium hirsutum HOM05D005782 ORTHO05D007436 1.0e-71 274.2 334 50.0
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 1.5e-70 270.4 340 49.1
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 3.3e-70 269.2 341 47.8
HanXRQChr03g0067061 Helianthus annuus HOM05D005782 ORTHO05D007436 3.3e-70 269.2 345 47.5
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 9.6e-70 267.7 357 46.2
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 1.8e-68 263.5 311 48.2
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.8e-68 263.5 306 50.0
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 2.4e-68 263.1 332 48.8
CAN.G63.1 Capsicum annuum HOM05D005782 ORTHO05D007436 4.0e-68 262.3 339 49.0
PSO170G1242 Papaver somniferum HOM05D005782 ORTHO05D007436 2.0e-67 260.0 322 49.4
PSO063G1085 Papaver somniferum HOM05D005782 ORTHO05D007436 4.5e-67 258.8 322 50.0
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 2.9e-66 256.1 247 58.7
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 4.9e-66 255.4 336 45.5
CDE04G3649 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 2.1e-64 250.0 336 45.8
Nn8g41244 Nelumbo nucifera HOM05D005782 ORTHO05D007436 2.1e-64 250.0 317 48.3
VMungo0464G0621 Vigna mungo HOM05D005782 ORTHO05D007436 4.6e-64 248.8 314 48.7
AUR62015437 Chenopodium quinoa HOM05D005782 ORTHO05D007436 6.7e-63 245.0 318 45.9
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 1.1e-62 244.2 228 56.6
ClCG11G011190 Citrullus lanatus HOM05D005782 ORTHO05D007436 1.1e-62 244.2 439 39.0
Nitab4.5_0000170g0200 Nicotiana tabacum HOM05D005782 ORTHO05D007436 1.1e-62 244.2 321 46.4
Sopen07g022440 Solanum pennellii HOM05D005782 ORTHO05D007436 1.9e-62 243.4 340 45.9
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 2.8e-61 239.6 339 42.2
Oeu021242.1 Olea europaea HOM05D005782 ORTHO05D007436 3.7e-61 239.2 320 45.6
Rhsim01G0103700 Rhododendron simsii HOM05D005782 ORTHO05D007436 6.2e-61 238.4 341 44.9
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 2.4e-60 236.5 341 41.3
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 3.1e-60 236.1 317 45.7
RhsimUnG0238700 Rhododendron simsii HOM05D005782 ORTHO05D007436 6.9e-60 235.0 350 43.7
Lsat_1_v5_gn_7_57180 Lactuca sativa HOM05D005782 ORTHO05D007436 2.0e-59 233.4 295 48.1
Psat1g051920 Pisum sativum HOM05D005782 ORTHO05D007436 1.0e-58 231.1 332 42.2
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 3.8e-58 229.2 334 41.3
FAN17G0526 Fragaria x ananassa HOM05D005782 ORTHO05D007436 1.9e-57 226.9 290 48.3
THA.LOC104804495 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 1.9e-57 226.9 201 60.7
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 2.1e-56 223.4 274 47.8
Cfa012886 Carpinus fangiana HOM05D005782 ORTHO05D007436 1.0e-55 221.1 244 52.9
MELO3C003909.2 Cucumis melo HOM05D005782 ORTHO05D007436 1.9e-54 216.9 238 52.1
MBI13_g33574_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 6.3e-53 211.8 316 42.1
QL11p006989 Quercus lobata HOM05D005782 ORTHO05D007436 1.5e-51 207.2 293 45.1
FAN22G1527 Fragaria x ananassa HOM05D005782 ORTHO05D007436 3.4e-51 206.1 226 53.5
Ciclev10033693m.g Citrus clementina HOM05D005782 ORTHO05D007436 1.1e-49 201.1 197 55.8
DCAR_014583 Daucus carota HOM05D005782 ORTHO05D010280 1.4e-49 200.7 238 51.7
Duzib150G0032 Durio zibethinus HOM05D005782 ORTHO05D007436 9.3e-49 198.0 226 53.1
Medtr6g093210 Medicago truncatula HOM05D005782 ORTHO05D007436 2.7e-48 196.4 242 47.5
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 2.7e-48 196.4 210 52.9
Hund04583 Selenicereus undatus HOM05D005782 ORTHO05D007436 6.7e-47 191.8 341 39.3
Glyma.01G001100 Glycine max HOM05D005782 ORTHO05D007436 1.6e-45 187.2 219 49.3
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 6.3e-45 185.3 312 36.9
Pp3c4_7870 Physcomitrium patens HOM05D005782 ORTHO05D007436 3.4e-43 179.5 348 35.9
unitig_578.g15870 Utricularia gibba HOM05D000412 ORTHO05D000429 3.4e-43 179.5 286 40.2
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 1.9e-41 173.7 348 33.9
vmacro20737 Vaccinium macrocarpon HOM05D005782 ORTHO05D007436 9.7e-38 161.4 349 35.2
Lj5A796G22 Lonicera japonica HOM05D005782 ORTHO05D007436 6.3e-37 158.7 195 50.8
Phvul.L001608 Phaseolus vulgaris HOM05D005782 ORTHO05D007436 4.1e-36 156.0 194 46.4
AagrBONN_evm.TU.Sc2ySwM_117.1743 Anthoceros agrestis HOM05D005782 ORTHO05D007436 1.2e-35 154.5 226 41.6
Cpa.g.sc91.69 Carica papaya HOM05D005782 ORTHO05D007436 2.0e-35 153.7 229 43.7
A08p18910 Brassica napus HOM05D005782 ORTHO05D007436 4.5e-35 152.5 202 50.5
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 7.2e-33 145.2 257 38.9
Pp3c10_12270 Physcomitrium patens HOM05D005782 ORTHO05D007436 3.6e-32 142.9 326 33.1
Peaxi162Scf00474g00221 Petunia axillaris HOM05D005782 ORTHO05D007436 1.0e-31 141.4 159 49.7
Gohir.A05G000250 Gossypium hirsutum HOM05D005782 ORTHO05D007436 2.6e-30 136.7 190 45.8
Solyc07g042820.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 2.6e-22 110.2 139 45.3
HPP92_020430 Vanilla planifolia HOM05D005782 ORTHO05D007436 5.7e-22 109.0 84 65.5
QL11p007002 Quercus lobata HOM05D005782 ORTHO05D007436 6.3e-21 105.5 60 80.0
Peaxi162Scf00474g00214 Petunia axillaris HOM05D005782 ORTHO05D007436 1.9e-17 94.0 147 42.9
Ciclev10033590m.g Citrus clementina HOM05D005782 ORTHO05D007436 5.5e-17 92.4 140 42.9
BcaC01g01117 Brassica carinata HOM05D005782 ORTHO05D027183 2.7e-16 90.1 206 36.4
Dinv26495 Davidia involucrata HOM05D000001 ORTHO05D010280 1.2e-14 84.7 82 56.1
Solyc07g042800.2 Solanum lycopersicum HOM05D005782 ORTHO05D007436 5.7e-14 82.4 142 38.7
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 7.7e-11 72.0 108 39.8
Actinidia02544 Actinidia chinensis HOM05D005782 ORTHO05D007436 2.2e-10 70.5 53 62.3
AUR62044085 Chenopodium quinoa HOM05D005782 ORTHO05D007436 8.5e-10 68.6 108 38.9
Solyc07g042810.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 2.7e-08 63.5 51 68.6
Actinidia02524 Actinidia chinensis HOM05D005782 ORTHO05D007436 6.1e-08 62.4 92 41.3
Cre06.g260250 Chlamydomonas reinhardtii HOM05D005782 ORTHO05D007436 8.8e-07 58.5 262 23.3


User provided reference genes

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