Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 5.8e-92 340.9 174 100.0
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 5.8e-92 340.9 174 100.0
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 5.8e-92 340.9 174 100.0
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 5.8e-92 340.9 174 100.0
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 1.7e-91 339.3 174 99.4
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 3.8e-91 338.2 174 98.9
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 3.0e-88 328.6 174 94.8
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 1.5e-87 326.2 174 94.3
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 9.6e-87 323.6 174 94.3
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 1.3e-86 323.2 173 94.2
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.6e-86 322.8 174 94.3
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 1.6e-86 322.8 174 92.0
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 1.3e-83 313.2 166 94.6
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 4.9e-83 311.2 166 94.0
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 3.2e-82 308.5 174 87.4
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 3.9e-80 301.6 174 85.6
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 3.9e-80 301.6 174 86.2
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 5.1e-80 301.2 174 85.6
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 4.8e-78 294.7 174 83.9
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 5.3e-77 291.2 171 86.5
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 9.0e-77 290.4 174 82.2
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.2e-76 290.0 174 82.8
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 2.0e-76 289.3 151 94.0
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 6.5e-75 284.3 174 81.0
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 7.1e-74 280.8 174 78.7
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 3.5e-73 278.5 174 79.3
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 1.3e-72 276.6 174 78.7
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.3e-72 276.6 174 76.4
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 1.8e-72 276.2 174 76.4
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.8e-72 276.2 174 76.4
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 78.2
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 3.0e-72 275.4 174 76.4
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 3.9e-72 275.0 174 78.7
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 8.7e-72 273.9 174 76.4
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.1e-71 273.5 174 77.0
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.1e-71 273.5 174 74.1
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 1.9e-71 272.7 174 74.7
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 75.9
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 76.4
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.3e-71 271.9 174 75.3
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 3.3e-71 271.9 174 74.7
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 74.7
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 73.6
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 1.6e-70 269.6 174 74.1
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 73.6
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 74.1
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 73.6
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 75.3
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 74.7
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 74.1
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 1.1e-69 266.9 175 75.4
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.4e-69 266.5 194 69.1
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 74.1
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 75.3
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 73.6
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 6.9e-69 264.2 174 73.6
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 6.9e-69 264.2 174 75.9
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.5e-68 263.1 174 74.1
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 2.0e-68 262.7 174 73.0
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 73.6
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 7.6e-68 260.8 174 73.0
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.0
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 72.4
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 71.3
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 72.4
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 5.0e-67 258.1 174 72.4
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 72.4
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 71.3
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 71.8
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 2.5e-66 255.8 174 71.8
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 3.2e-66 255.4 174 73.0
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 71.3
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 71.3
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 71.8
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 69.0
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 3.6e-65 251.9 175 70.9
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 69.0
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 6.1e-65 251.1 174 71.8
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 69.0
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 71.3
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 5.1e-64 248.1 198 64.1
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 5.1e-64 248.1 171 70.8
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 2.8e-62 242.3 174 69.0
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 3.7e-62 241.9 171 69.0
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 4.8e-62 241.5 174 67.8
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 4.8e-62 241.5 175 70.9
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 64.9
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 69.5
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 67.8
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.4e-61 239.2 158 73.4
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 9.1e-61 237.3 174 68.4
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.4e-60 235.3 156 70.5
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 4.5e-60 235.0 143 75.5
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 1.0e-59 233.8 174 67.2
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 1.3e-59 233.4 174 67.8
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 1.3e-59 233.4 174 67.8
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 66.7
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 1.8e-56 223.0 146 73.3
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 2.3e-56 222.6 174 63.2
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 2.3e-56 222.6 173 61.8
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 2.6e-55 219.2 174 62.6
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 2.6e-55 219.2 174 62.6
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.7e-54 216.5 174 62.1
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 1.2e-52 210.3 147 70.7
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 1.3e-51 206.8 174 58.0
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.7e-51 206.5 174 59.2
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.2e-51 206.1 174 61.5
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 2.2e-51 206.1 174 59.8
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.4e-50 203.4 174 59.8
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 7.2e-50 201.1 176 62.5
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 7.2e-50 201.1 122 75.4
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 9.4e-50 200.7 122 73.0
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 8.0e-49 197.6 172 59.3
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.0e-49 197.6 122 73.8
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 1.0e-48 197.2 172 59.3
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.8e-48 196.4 196 53.6
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 5.7e-47 191.4 175 56.0
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 3.1e-45 185.7 171 57.3
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 5.9e-44 181.4 182 54.4
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 5.9e-44 181.4 239 43.9
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 4.7e-41 171.8 174 51.7
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 5.7e-39 164.9 119 73.1
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 7.5e-39 164.5 127 72.4
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 2.2e-38 162.9 95 75.8
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 8.2e-38 161.0 94 76.6
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 1.8e-37 159.8 177 48.6
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 7.0e-37 157.9 173 50.9
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 7.7e-36 154.5 173 45.1
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.0e-35 154.1 94 73.4
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 3.8e-35 152.1 93 74.2
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 1.0e-32 144.1 128 64.1
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.7e-30 136.7 96 64.6
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 8.3e-22 107.8 168 37.5
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 1.8e-21 106.7 81 59.3
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 1.1e-18 97.4 85 57.6
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.5e-18 96.3 55 74.5
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 6.1e-17 91.7 176 31.8
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.0e-16 90.9 53 75.5
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.3e-14 84.0 48 75.0
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.7e-11 73.6 94 45.7
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.0e-11 72.0 38 78.9
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.5e-10 70.5 157 34.4
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.9e-10 70.1 173 29.5
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 6.8e-08 61.6 50 60.0


User provided reference genes

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