Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p57770 Brassica napus HOM05D001098 ORTHO05D012826 1.3e-42 176.0 94 100.0
A09p10750 Brassica napus HOM05D001098 ORTHO05D012826 5.8e-38 160.6 88 97.7
C09p31930 Brassica napus HOM05D001098 ORTHO05D012826 3.2e-36 154.8 94 92.6
C03p58210 Brassica napus HOM05D001098 ORTHO05D012826 3.9e-34 147.9 142 65.5
C03p62850 Brassica napus HOM05D001098 ORTHO05D012826 1.1e-23 113.2 64 100.0
C03p64650 Brassica napus HOM05D001098 ORTHO05D012826 5.5e-20 100.9 145 49.7
BolC3t18723H Brassica oleracea HOM05D001098 ORTHO05D012826 5.5e-20 100.9 145 49.7
C03p20580 Brassica napus HOM05D001098 ORTHO05D012826 1.6e-19 99.4 146 49.3
BolC3t14466H Brassica oleracea HOM05D001098 ORTHO05D012826 1.6e-19 99.4 146 49.3
BraA10t45200Z Brassica rapa HOM05D001098 ORTHO05D012826 3.7e-16 88.2 114 53.5
HanXRQChr16g0515181 Helianthus annuus HOM05D001098 ORTHO05D002527 3.3e-09 65.1 88 51.1
PSO675G9097 Papaver somniferum HOM05D001098 ORTHO05D002527 5.7e-09 64.3 64 57.8
Aqoxy3G04159 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 7.4e-09 63.9 63 60.3
Hma1.2p1_0032F.1_g018710 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 7.4e-09 63.9 89 49.4
Zm00001eb412040 Zea mays HOM05D001098 ORTHO05D002527 7.4e-09 63.9 63 60.3
ECA233G3688 Erigeron canadensis HOM05D001098 ORTHO05D002527 9.7e-09 63.5 63 60.3
PSO541G0403 Papaver somniferum HOM05D001098 ORTHO05D002527 9.7e-09 63.5 64 57.8
TWI75G1677 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 9.7e-09 63.5 89 48.3
BcaB03g12410 Brassica carinata HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
BcaC01g00493 Brassica carinata HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
BcaNung02390 Brassica carinata HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
BcaNung06457 Brassica carinata HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
A03p63540 Brassica napus HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
C07p61120 Brassica napus HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
C07p61130 Brassica napus HOM05D001098 ORTHO05D012826 1.3e-08 63.2 50 74.0
BolC7t46536H Brassica oleracea HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
BolC7t46537H Brassica oleracea HOM05D001098 ORTHO05D012826 1.3e-08 63.2 50 74.0
BraA03t15424Z Brassica rapa HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
Carub.0007s0496 Capsella rubella HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
Thhalv10025582m.g Eutrema salsugineum HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
Sp7g33130 Schrenkiella parvula HOM05D001098 ORTHO05D002527 1.3e-08 63.2 52 71.2
arahy.Tifrunner.gnm1.ann1.1X8DY6 Arachis hypogaea HOM05D001098 ORTHO05D002527 1.7e-08 62.8 63 60.3
A01p03220 Brassica napus HOM05D001098 ORTHO05D002527 1.7e-08 62.8 53 69.8
A08p21890 Brassica napus HOM05D001098 ORTHO05D002527 1.7e-08 62.8 53 69.8
C03p80640 Brassica napus HOM05D001098 ORTHO05D002527 1.7e-08 62.8 53 69.8
BolC3t20307H Brassica oleracea HOM05D001098 ORTHO05D002527 1.7e-08 62.8 53 69.8
BraA01t00307Z Brassica rapa HOM05D001098 ORTHO05D002527 1.7e-08 62.8 53 69.8
BraA08t34142Z Brassica rapa HOM05D001098 ORTHO05D002527 1.7e-08 62.8 53 69.8
Sed0023927 Sechium edule HOM05D001098 ORTHO05D002527 1.7e-08 62.8 63 58.7
TAR628G0214 Trochodendron aralioides HOM05D000069 ORTHO05D000060 1.7e-08 62.8 54 68.5
C01p03570 Brassica napus HOM05D001098 ORTHO05D002527 2.2e-08 62.4 53 67.9
BolC1t00346H Brassica oleracea HOM05D001098 ORTHO05D012826 2.2e-08 62.4 53 67.9
Lsat_1_v5_gn_8_120701 Lactuca sativa HOM05D001098 ORTHO05D002527 2.2e-08 62.4 63 58.7
Manes.18G113200 Manihot esculenta HOM05D001098 ORTHO05D002527 2.2e-08 62.4 64 57.8
AL7G15820 Arabidopsis lyrata HOM05D001098 ORTHO05D002527 2.8e-08 62.0 52 69.2
Migut.B00005 Erythranthe guttata HOM05D001098 ORTHO05D002527 2.8e-08 62.0 78 52.6
CARHR243660 Cardamine hirsuta HOM05D001098 ORTHO05D002527 3.7e-08 61.6 52 69.2
AUR62010182 Chenopodium quinoa HOM05D001098 ORTHO05D002527 3.7e-08 61.6 85 44.7
Eucgr.I01538 Eucalyptus grandis HOM05D001098 ORTHO05D002527 3.7e-08 61.6 63 58.7
FvH4_2g16930 Fragaria vesca HOM05D001098 ORTHO05D002527 3.7e-08 61.6 63 58.7
FAN24G1038 Fragaria x ananassa HOM05D001098 ORTHO05D002527 3.7e-08 61.6 63 58.7
FAN27G2361 Fragaria x ananassa HOM05D001098 ORTHO05D002527 3.7e-08 61.6 63 58.7
MD05G1141000 Malus domestica HOM05D001098 ORTHO05D002527 3.7e-08 61.6 63 58.7
MD11G1242300 Malus domestica HOM05D001098 ORTHO05D002527 3.7e-08 61.6 63 58.7
Manes.02G204100 Manihot esculenta HOM05D001098 ORTHO05D002527 3.7e-08 61.6 63 58.7
Nitab4.5_0001003g0090 Nicotiana tabacum HOM05D001098 ORTHO05D002527 3.7e-08 61.6 69 55.1
Prupe.8G181000 Prunus persica HOM05D001098 ORTHO05D002527 3.7e-08 61.6 63 58.7
Rhsim05G0044700 Rhododendron simsii HOM05D001098 ORTHO05D002527 3.7e-08 61.6 74 54.1
Solyc11g008590.2 Solanum lycopersicum HOM05D001098 ORTHO05D002527 3.7e-08 61.6 69 58.0
Sopen11g004380 Solanum pennellii HOM05D001098 ORTHO05D002527 3.7e-08 61.6 69 58.0
PGSC0003DMG400016250 Solanum tuberosum HOM05D001098 ORTHO05D002527 3.7e-08 61.6 69 58.0
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 4.8e-08 61.2 52 69.2
CAN.G321.15 Capsicum annuum HOM05D001098 ORTHO05D002527 4.8e-08 61.2 81 50.6
MBI01_g17242_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 4.8e-08 61.2 63 58.7
MBI01_g32424_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 4.8e-08 61.2 63 58.7
Nitab4.5_0009631g0030 Nicotiana tabacum HOM05D001098 ORTHO05D002527 4.8e-08 61.2 68 55.9
Os07g0573700 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D002527 4.8e-08 61.2 63 57.1
Peaxi162Scf00296g01213 Petunia axillaris HOM05D001098 ORTHO05D002527 4.8e-08 61.2 63 58.7
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 4.8e-08 61.2 63 57.1
Atru.chr5.3569 Acer truncatum HOM05D001098 ORTHO05D002527 6.3e-08 60.8 52 69.2
Ciclev10028748m.g Citrus clementina HOM05D001098 ORTHO05D002527 6.3e-08 60.8 51 70.6
PGR142G3259 Punica granatum HOM05D001098 ORTHO05D002527 6.3e-08 60.8 51 70.6
SalBow1G7648 Salvia bowleyana HOM05D001098 ORTHO05D002527 6.3e-08 60.8 52 69.2
SalBow7G2674 Salvia bowleyana HOM05D001098 ORTHO05D002527 6.3e-08 60.8 52 69.2
ClCG02G010830 Citrullus lanatus HOM05D001098 ORTHO05D002527 8.2e-08 60.5 63 57.1
Cc09_g10880 Coffea canephora HOM05D001098 ORTHO05D002527 8.2e-08 60.5 51 68.6
CsaV3_6G010050 Cucumis sativus L. HOM05D001098 ORTHO05D002527 8.2e-08 60.5 63 57.1
Dinv41864 Davidia involucrata HOM05D001098 ORTHO05D002527 8.2e-08 60.5 63 57.1
Oeu012219.1 Olea europaea HOM05D001098 ORTHO05D002527 8.2e-08 60.5 63 57.1
RcHm_v2.0_Chr6g0281071 Rosa chinensis HOM05D001098 ORTHO05D002527 8.2e-08 60.5 63 58.7
Sed0023457 Sechium edule HOM05D001098 ORTHO05D002527 8.2e-08 60.5 63 57.1
arahy.Tifrunner.gnm1.ann1.5U49GI Arachis hypogaea HOM05D001098 ORTHO05D002527 1.1e-07 60.1 79 55.7
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 1.1e-07 60.1 79 55.7
CANSAT25G0204 Cannabis sativa HOM05D001098 ORTHO05D002527 1.1e-07 60.1 63 55.6
MELO3C013485.2 Cucumis melo HOM05D001098 ORTHO05D002527 1.1e-07 60.1 63 55.6
Potri.016G113200 Populus trichocarpa HOM05D001098 ORTHO05D002527 1.1e-07 60.1 63 55.6
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 1.1e-07 60.1 96 42.7
GSVIVG01023864001 Vitis vinifera HOM05D001098 ORTHO05D002527 1.1e-07 60.1 63 57.1
Zm00001eb325140 Zea mays HOM05D001098 ORTHO05D002527 1.1e-07 60.1 63 55.6
Aa31sc18G70 Aethionema arabicum HOM05D001098 ORTHO05D002527 1.4e-07 59.7 52 69.2
MSTRG.16957 Avicennia marina HOM05D001098 ORTHO05D002527 1.4e-07 59.7 63 57.1
EL10Ac9g21546 Beta vulgaris HOM05D001098 ORTHO05D002527 1.4e-07 59.7 63 55.6
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 1.4e-07 59.7 63 57.1
Ca_06505_v3 Cicer arietinum L. HOM05D001098 ORTHO05D002527 1.4e-07 59.7 51 68.6
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 1.4e-07 59.7 51 68.6
Glyma.14G000600 Glycine max HOM05D001098 ORTHO05D002527 1.4e-07 59.7 51 68.6
LjContig00081g0022408 Lotus japonicus HOM05D001098 ORTHO05D002527 1.4e-07 59.7 51 68.6
Medtr5g099280 Medicago truncatula HOM05D001098 ORTHO05D002527 1.4e-07 59.7 51 68.6
Phvul.008G292800 Phaseolus vulgaris HOM05D001098 ORTHO05D002527 1.4e-07 59.7 66 54.5
Psat2g000520 Pisum sativum HOM05D001098 ORTHO05D002527 1.4e-07 59.7 51 68.6
TAR381G1518 Trochodendron aralioides HOM05D001098 ORTHO05D002527 1.4e-07 59.7 61 59.0
VMungo0647G1862 Vigna mungo HOM05D001098 ORTHO05D002527 1.4e-07 59.7 51 68.6
AUR62013184 Chenopodium quinoa HOM05D001098 ORTHO05D002527 1.8e-07 59.3 52 65.4
TPR.G18630 Trifolium pratense HOM05D001098 ORTHO05D002527 1.8e-07 59.3 51 66.7
FAN15G1608 Fragaria x ananassa HOM05D001098 ORTHO05D002527 2.4e-07 58.9 59 59.3
Actinidia17990 Actinidia chinensis HOM05D001098 ORTHO05D002527 3.1e-07 58.5 63 57.1
Duzib248G0955 Durio zibethinus HOM05D001098 ORTHO05D002527 3.1e-07 58.5 51 66.7
Lj9A408T81 Lonicera japonica HOM05D001098 ORTHO05D002527 3.1e-07 58.5 63 57.1
Lalb_Chr10g0107701 Lupinus albus HOM05D001098 ORTHO05D002527 3.1e-07 58.5 51 64.7
Rhsim11G0198300 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.1e-07 58.5 55 63.6
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 3.1e-07 58.5 52 65.4
CiPaw.05G093900 Carya illinoinensis HOM05D001098 ORTHO05D002527 4.1e-07 58.2 52 67.3
CiPaw.06G114700 Carya illinoinensis HOM05D001098 ORTHO05D002527 4.1e-07 58.2 51 68.6
Duzib132G1111 Durio zibethinus HOM05D001098 ORTHO05D002527 4.1e-07 58.2 52 65.4
Gohir.A04G048165 Gossypium hirsutum HOM05D001098 ORTHO05D012826 4.1e-07 58.2 52 61.5
Nn6g31647 Nelumbo nucifera HOM05D001098 ORTHO05D002527 4.1e-07 58.2 63 55.6
Gohir.A09G059050 Gossypium hirsutum HOM05D001098 ORTHO05D012826 5.3e-07 57.8 52 61.5
Actinidia20579 Actinidia chinensis HOM05D001098 ORTHO05D002527 6.9e-07 57.4 63 55.6
Sc08g0002100 Simmondsia chinensis HOM05D001098 ORTHO05D002527 6.9e-07 57.4 51 64.7
Oeu050440.1 Olea europaea HOM05D001098 ORTHO05D002527 9.1e-07 57.0 63 55.6
SEGI_32505 Sequoiadendron giganteum HOM05D001098 ORTHO05D002527 9.1e-07 57.0 55 58.2
Ah.01g017660 Amaranthus hybridus HOM05D001098 ORTHO05D002527 1.5e-06 56.2 63 54.0
Haze_10071 Corylus avellana HOM05D001098 ORTHO05D002527 1.5e-06 56.2 52 65.4
Gohir.A04G111700 Gossypium hirsutum HOM05D001098 ORTHO05D002527 2.0e-06 55.8 52 63.5
COL.COLO4_34319 Corchorus olitorius HOM05D001098 ORTHO05D002527 2.6e-06 55.5 52 63.5
Thecc.02G147100 Theobroma cacao HOM05D001098 ORTHO05D002527 2.6e-06 55.5 52 63.5
HPP92_015755 Vanilla planifolia HOM05D001098 ORTHO05D002527 2.6e-06 55.5 63 52.4
Gohir.D04G152000 Gossypium hirsutum HOM05D001098 ORTHO05D002527 5.9e-06 54.3 52 63.5
DCAR_006386 Daucus carota HOM05D001098 ORTHO05D012826 7.7e-06 53.9 43 72.1
Gohir.A13G064400 Gossypium hirsutum HOM05D001098 ORTHO05D002527 7.7e-06 53.9 51 60.8


User provided reference genes

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