Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p57610 Brassica napus HOM05D005423 ORTHO05D006223 3.5e-80 301.6 154 100.0
BolC7t46226H Brassica oleracea HOM05D005423 ORTHO05D006223 5.5e-78 294.3 154 97.4
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 2.1e-69 265.8 160 88.1
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 5.2e-68 261.2 160 86.9
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.3e-42 176.8 161 60.9
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 7.3e-38 161.0 152 54.6
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 5.8e-27 124.8 157 43.9
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 6.0e-24 114.8 152 42.1
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.2e-18 96.3 132 41.7
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 3.2e-17 92.4 135 39.3
Carub.0007s1174 Capsella rubella HOM05D005423 ORTHO05D006223 4.2e-17 92.0 147 36.7
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 2.7e-16 89.4 132 38.6
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 2.7e-16 89.4 132 38.6
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 6.0e-16 88.2 134 38.1
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 6.0e-16 88.2 134 38.1
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 7.9e-16 87.8 133 39.1
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.0e-15 87.4 130 38.5
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.1e-14 84.0 163 32.5
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 3.3e-14 82.4 164 31.7
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 3.3e-14 82.4 157 33.8
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 6.2e-13 78.2 135 37.8
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-12 76.6 159 34.6
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 4.0e-12 75.5 159 34.0
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 4.0e-12 75.5 159 34.0
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 6.9e-12 74.7 159 34.0
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 9.0e-12 74.3 161 32.3
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 9.0e-12 74.3 159 34.0
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.2e-11 73.9 146 34.9
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.5e-11 73.6 163 33.1
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 2.0e-11 73.2 138 35.5
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 5.8e-11 71.6 163 31.3
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 9.9e-11 70.9 142 36.6
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 9.9e-11 70.9 163 32.5
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 2.2e-10 69.7 132 36.4
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 3.8e-10 68.9 135 35.6
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 6.4e-10 68.2 157 35.0
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 8.4e-10 67.8 157 35.0
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 8.4e-10 67.8 88 43.2
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 8.4e-10 67.8 161 31.1
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 1.1e-09 67.4 159 34.0
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 7.1e-09 64.7 154 27.9
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.2e-08 63.9 92 45.7
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.8e-07 60.1 140 28.6
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 2.3e-07 59.7 148 29.1
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 3.0e-07 59.3 140 28.6
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 1.1e-06 57.4 140 28.6
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 4.3e-06 55.5 143 28.0
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 4.3e-06 55.5 130 29.2
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 7.4e-06 54.7 141 28.4
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 9.6e-06 54.3 143 28.0


User provided reference genes

Program Settings