Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p57020 Brassica napus HOM05D004751 ORTHO05D005819 2.5e-127 458.8 225 100.0
A01p08650 Brassica napus HOM05D004751 ORTHO05D005819 3.7e-75 285.4 288 57.3
BraA01t00815Z Brassica rapa HOM05D004751 ORTHO05D005819 3.7e-75 285.4 288 57.3
BcaC09g51723 Brassica carinata HOM05D004751 ORTHO05D005819 3.2e-74 282.3 288 56.9
C01p10120 Brassica napus HOM05D004751 ORTHO05D005819 3.2e-74 282.3 288 56.9
BolC1t00970H Brassica oleracea HOM05D004751 ORTHO05D005819 3.2e-74 282.3 288 56.9
Thhalv10024212m.g Eutrema salsugineum HOM05D004751 ORTHO05D005819 4.6e-73 278.5 288 56.9
AL7G23020 Arabidopsis lyrata HOM05D004751 ORTHO05D005819 5.1e-72 275.0 288 56.2
Carub.0007s1117 Capsella rubella HOM05D004751 ORTHO05D005819 1.1e-71 273.9 288 56.2
Sp7g27250 Schrenkiella parvula HOM05D004751 ORTHO05D005819 1.5e-71 273.5 288 56.2
AT4G29380 Arabidopsis thaliana HOM05D004751 ORTHO05D005819 4.3e-71 271.9 288 55.9
Aa31LG2G21070 Aethionema arabicum HOM05D004751 ORTHO05D005819 6.2e-70 268.1 288 55.2
THA.LOC104814595 Tarenaya hassleriana HOM05D004751 ORTHO05D005819 1.4e-66 256.9 257 56.8
Gohir.A05G026300 Gossypium hirsutum HOM05D004751 ORTHO05D005819 8.1e-62 241.1 207 61.8
Gohir.D05G027800 Gossypium hirsutum HOM05D004751 ORTHO05D005819 8.1e-62 241.1 207 61.8
Gorai.009G028000 Gossypium raimondii HOM05D004751 ORTHO05D005819 8.1e-62 241.1 207 61.8
Duzib150G1241 Durio zibethinus HOM05D004751 ORTHO05D005819 1.2e-60 237.3 207 60.9
Thecc.09G099100 Theobroma cacao HOM05D004751 ORTHO05D005819 1.5e-60 236.9 207 60.9
Manes.16G108000 Manihot esculenta HOM05D004751 ORTHO05D005819 2.6e-60 236.1 255 52.5
Atru.chr7.1477 Acer truncatum HOM05D004751 ORTHO05D005819 9.9e-60 234.2 256 52.7
TWI34G0109 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 1.3e-59 233.8 256 52.0
Phvul.004G175100 Phaseolus vulgaris HOM05D004751 ORTHO05D005819 2.2e-59 233.0 261 51.7
PGR102G2506 Punica granatum HOM05D004751 ORTHO05D005819 2.9e-59 232.6 197 62.9
Cfa003165 Carpinus fangiana HOM05D004751 ORTHO05D005819 4.9e-59 231.9 224 56.7
ClCG03G016070 Citrullus lanatus HOM05D004751 ORTHO05D005819 6.4e-59 231.5 205 59.5
Glyma.07G125200 Glycine max HOM05D004751 ORTHO05D005819 8.4e-59 231.1 261 51.7
Potri.006G153100 Populus trichocarpa HOM05D004751 ORTHO05D005819 8.4e-59 231.1 207 60.4
VMungo0464G0426 Vigna mungo HOM05D004751 ORTHO05D005819 8.4e-59 231.1 261 51.7
arahy.Tifrunner.gnm1.ann1.11NKIJ Arachis hypogaea HOM05D004751 ORTHO05D005819 1.1e-58 230.7 281 49.5
Lj2g0020264 Lotus japonicus HOM05D004751 ORTHO05D005819 1.1e-58 230.7 281 49.5
Sabra06G0121300 Salix brachista HOM05D004751 ORTHO05D005819 1.4e-58 230.3 207 59.9
FAN01G0060 Fragaria x ananassa HOM05D004751 ORTHO05D005819 2.4e-58 229.6 253 51.8
Glyma.01G006600 Glycine max HOM05D004751 ORTHO05D005819 2.4e-58 229.6 214 58.4
Prupe.2G065200 Prunus persica HOM05D004751 ORTHO05D005819 3.2e-58 229.2 256 50.8
RcHm_v2.0_Chr1g0331571 Rosa chinensis HOM05D004751 ORTHO05D005819 3.2e-58 229.2 256 51.2
QL02p040907 Quercus lobata HOM05D004751 ORTHO05D005819 4.2e-58 228.8 256 51.2
CANSAT56G3494 Cannabis sativa HOM05D004751 ORTHO05D005819 5.4e-58 228.4 211 58.3
Haze_25834 Corylus avellana HOM05D004751 ORTHO05D005819 5.4e-58 228.4 256 50.8
Ca_25582_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 9.3e-58 227.6 257 51.4
MD07G1058300 Malus domestica HOM05D004751 ORTHO05D005819 9.3e-58 227.6 205 59.5
Cc06_g10590 Coffea canephora HOM05D004751 ORTHO05D005819 1.2e-57 227.3 205 59.5
Migut.K00548 Erythranthe guttata HOM05D004751 ORTHO05D005819 1.2e-57 227.3 214 57.5
A01p08660 Brassica napus HOM05D004751 ORTHO05D000206 2.1e-57 226.5 180 67.2
TWI32G0016 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 2.1e-57 226.5 255 50.2
TAR383G0360 Trochodendron aralioides HOM05D004751 ORTHO05D005819 2.1e-57 226.5 200 59.5
SGA_v2.0_scaffold19G08722 Striga asiatica HOM05D004751 ORTHO05D005819 3.5e-57 225.7 257 51.0
Actinidia17515 Actinidia chinensis HOM05D004751 ORTHO05D005819 4.6e-57 225.3 251 51.0
Hma1.2p1_0012F.1_g007400 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 6.0e-57 224.9 205 59.0
MD02G1262100 Malus domestica HOM05D004751 ORTHO05D005819 6.0e-57 224.9 205 59.0
FvH4_7g05110 Fragaria vesca HOM05D004751 ORTHO05D005819 7.9e-57 224.6 205 59.0
FAN06G4551 Fragaria x ananassa HOM05D004751 ORTHO05D005819 7.9e-57 224.6 205 59.0
arahy.Tifrunner.gnm1.ann1.9BR2YY Arachis hypogaea HOM05D004751 ORTHO05D005819 1.0e-56 224.2 253 50.6
arahy.Tifrunner.gnm1.ann1.YRLX64 Arachis hypogaea HOM05D004751 ORTHO05D005819 1.0e-56 224.2 253 50.6
Medtr6g088835 Medicago truncatula HOM05D004751 ORTHO05D005819 1.0e-56 224.2 258 50.8
Peaxi162Scf01157g00011 Petunia axillaris HOM05D004751 ORTHO05D005819 1.0e-56 224.2 249 51.4
GSVIVG01015287001 Vitis vinifera HOM05D004751 ORTHO05D005819 1.0e-56 224.2 288 46.5
FAN03G2869 Fragaria x ananassa HOM05D004751 ORTHO05D005819 1.3e-56 223.8 203 59.6
Solyc04g012170.4 Solanum lycopersicum HOM05D004751 ORTHO05D005819 2.3e-56 223.0 255 50.6
CAN.G787.12 Capsicum annuum HOM05D004751 ORTHO05D005819 3.0e-56 222.6 205 59.0
Oeu021455.1 Olea europaea HOM05D004751 ORTHO05D005819 3.0e-56 222.6 216 57.4
Sed0000923 Sechium edule HOM05D004751 ORTHO05D005819 3.9e-56 222.2 205 58.5
Sopen04g006260 Solanum pennellii HOM05D004751 ORTHO05D005819 3.9e-56 222.2 255 50.6
PGSC0003DMG400023589 Solanum tuberosum HOM05D004751 ORTHO05D005819 3.9e-56 222.2 255 50.6
SalBow1G2004 Salvia bowleyana HOM05D004751 ORTHO05D005819 5.1e-56 221.9 198 60.1
Lalb_Chr14g0371941 Lupinus albus HOM05D004751 ORTHO05D005819 6.6e-56 221.5 206 58.7
Hund26286 Selenicereus undatus HOM05D004751 ORTHO05D005819 6.6e-56 221.5 197 60.4
vmacro10847 Vaccinium macrocarpon HOM05D004751 ORTHO05D005819 6.6e-56 221.5 263 47.9
CSS0000434 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 1.1e-55 220.7 248 50.0
CSS0026223 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 1.1e-55 220.7 248 50.0
MELO3C015420.2 Cucumis melo HOM05D004751 ORTHO05D005819 1.5e-55 220.3 205 57.6
CsaV3_1G039890 Cucumis sativus L. HOM05D004751 ORTHO05D005819 1.5e-55 220.3 205 57.6
Nitab4.5_0004673g0040 Nicotiana tabacum HOM05D004751 ORTHO05D005819 1.5e-55 220.3 255 49.8
MSTRG.26388 Avicennia marina HOM05D004751 ORTHO05D005819 1.9e-55 219.9 218 56.9
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 1.9e-55 219.9 205 58.0
Lsat_1_v5_gn_7_39580 Lactuca sativa HOM05D004751 ORTHO05D005819 1.9e-55 219.9 265 47.9
Psat1g048040 Pisum sativum HOM05D004751 ORTHO05D005819 1.9e-55 219.9 258 50.0
Sc08g0008060 Simmondsia chinensis HOM05D004751 ORTHO05D005819 2.5e-55 219.5 205 58.5
TAR626G1784 Trochodendron aralioides HOM05D004751 ORTHO05D005819 2.5e-55 219.5 208 56.7
TAR639G0003 Trochodendron aralioides HOM05D004751 ORTHO05D005819 2.5e-55 219.5 208 56.7
Dinv42256 Davidia involucrata HOM05D004751 ORTHO05D005819 3.3e-55 219.2 255 49.4
Lj7C667T4 Lonicera japonica HOM05D004751 ORTHO05D005819 3.3e-55 219.2 284 46.5
MBI15_g07764_MAGBIO Magnolia biondii HOM05D004751 ORTHO05D005819 4.3e-55 218.8 207 56.0
TPR.G31000 Trifolium pratense HOM05D004751 ORTHO05D005819 4.3e-55 218.8 258 49.6
DCAR_028653 Daucus carota HOM05D004751 ORTHO05D005819 5.6e-55 218.4 205 56.6
Ciclev10007242m.g Citrus clementina HOM05D004751 ORTHO05D005819 7.4e-55 218.0 207 58.5
HanXRQChr03g0061061 Helianthus annuus HOM05D004751 ORTHO05D005819 7.4e-55 218.0 205 57.6
Ca_25584_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 1.6e-54 216.9 204 58.3
CDE04G0916 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 2.1e-54 216.5 199 57.8
PSO210G2464 Papaver somniferum HOM05D004751 ORTHO05D005819 2.8e-54 216.1 207 56.5
PSO210G3406 Papaver somniferum HOM05D004751 ORTHO05D005819 2.8e-54 216.1 207 56.5
Nitab4.5_0001242g0100 Nicotiana tabacum HOM05D004751 ORTHO05D005819 3.6e-54 215.7 197 58.9
AUR62010880 Chenopodium quinoa HOM05D004751 ORTHO05D005819 1.1e-53 214.2 208 55.8
Ah.09g230480 Amaranthus hybridus HOM05D004751 ORTHO05D005819 3.1e-53 212.6 249 49.4
EL10Ac8g18369 Beta vulgaris HOM05D004751 ORTHO05D005819 2.0e-52 209.9 205 55.6
unitig_8.g4485 Utricularia gibba HOM05D004751 ORTHO05D005819 2.0e-52 209.9 206 55.3
Hund09091 Selenicereus undatus HOM05D004751 ORTHO05D005819 1.4e-50 203.8 205 54.6
Aqoxy7G03607 Aquilegia oxysepala HOM05D004751 ORTHO05D005819 1.9e-50 203.4 205 55.1
CARHR237190 Cardamine hirsuta HOM05D004751 ORTHO05D005819 3.2e-50 202.6 191 60.2
Zm00001eb192340 Zea mays HOM05D004751 ORTHO05D005819 3.9e-48 195.7 197 53.8
Zm00001eb257890 Zea mays HOM05D004751 ORTHO05D005819 1.6e-46 190.3 197 53.3
Oeu018580.2 Olea europaea HOM05D004751 ORTHO05D005819 6.9e-45 184.9 210 51.9
Dinv36675 Davidia involucrata HOM05D004751 ORTHO05D005819 3.4e-44 182.6 261 43.3
AagrBONN_evm.TU.Sc2ySwM_228.4976 Anthoceros agrestis HOM05D004751 ORTHO05D005819 3.2e-42 176.0 196 47.4
Eucgr.C03719 Eucalyptus grandis HOM05D004751 ORTHO05D005819 3.2e-42 176.0 209 48.8
Pp3c15_10000 Physcomitrium patens HOM05D004751 ORTHO05D005819 6.0e-41 171.8 208 46.2
COL.COLO4_34728 Corchorus olitorius HOM05D004751 ORTHO05D005819 1.0e-40 171.0 160 58.1
Mapoly0002s0158 Marchantia polymorpha HOM05D004751 ORTHO05D005819 1.3e-40 170.6 196 49.0
Pp3c9_3860 Physcomitrium patens HOM05D004751 ORTHO05D005819 2.3e-40 169.9 208 46.2
Rhsim05G0038900 Rhododendron simsii HOM05D004751 ORTHO05D005819 3.9e-40 169.1 142 59.9
AUR62021393 Chenopodium quinoa HOM05D004751 ORTHO05D005819 1.4e-34 150.6 179 49.7
CBR_g47981 Chara braunii HOM05D004751 ORTHO05D005819 9.7e-31 137.9 250 35.2
SMO347G0104 Selaginella moellendorffii HOM05D004751 ORTHO05D005819 1.6e-30 137.1 204 41.7
SEGI_30648 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 3.2e-26 122.9 73 79.5
BcaB08g34921 Brassica carinata HOM05D004751 ORTHO05D005819 8.8e-24 114.8 138 51.4
Cpa.g.sc78.25 Carica papaya HOM05D004751 ORTHO05D005819 3.1e-21 106.3 161 41.6
PRCOL_00004168 Prasinoderma coloniale HOM05D004751 ORTHO05D005819 1.2e-20 104.4 210 32.9
ATR0730G043 Amborella trichopoda HOM05D004751 ORTHO05D005819 2.6e-20 103.2 139 43.2
MCO11G423 Micromonas commoda HOM05D004751 ORTHO05D005819 1.9e-18 97.1 218 29.8
Cre06.g290500 Chlamydomonas reinhardtii HOM05D004751 ORTHO05D005819 3.0e-16 89.7 266 27.1
CiPaw.03G223200 Carya illinoinensis HOM05D004751 ORTHO05D005819 2.8e-14 83.2 58 67.2
SEGI_14388 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 6.3e-14 82.0 58 62.1
SHI02646 Sapria himalayana HOM05D004751 ORTHO05D005819 8.2e-14 81.6 69 58.0
RcHm_v2.0_Chr1g0332501 Rosa chinensis HOM05D004751 ORTHO05D005819 5.5e-10 68.9 105 41.9
CDE12G0100 Ceratophyllum demersum HOM05D000087 ORTHO05D016004 3.6e-09 66.2 36 80.6
SHI02647 Sapria himalayana HOM05D004751 ORTHO05D005819 4.7e-09 65.9 35 85.7
C09p03160 Brassica napus HOM05D004751 ORTHO05D005819 4.4e-07 59.3 58 56.9
A06p04880 Brassica napus HOM05D004751 ORTHO05D005819 5.7e-07 58.9 34 79.4
BraA06t23692Z Brassica rapa HOM05D004751 ORTHO05D005819 5.7e-07 58.9 34 79.4
SHI02648 Sapria himalayana HOM05D004751 ORTHO05D005819 8.2e-06 55.1 41 63.4


User provided reference genes

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