Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 4.6e-180 634.4 316 100.0
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 4.6e-180 634.4 316 100.0
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 1.1e-168 596.7 384 82.0
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 3.5e-135 485.3 364 75.3
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 7.5e-122 441.0 352 71.3
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.3e-118 430.3 343 71.7
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 1.7e-118 429.9 345 69.9
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 4.3e-117 425.2 344 71.5
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 9.5e-117 424.1 339 70.2
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 6.1e-116 421.4 334 70.4
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 6.8e-115 417.9 238 85.3
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 9.8e-114 414.1 350 68.6
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 1.3e-113 413.7 333 70.0
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 6.0e-111 404.8 353 68.3
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.5e-106 390.2 361 66.2
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 1.3e-105 387.1 364 67.0
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 1.7e-102 376.7 295 70.8
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.0e-70 271.2 355 51.0
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 3.3e-61 239.6 363 48.8
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 3.3e-45 186.4 477 36.7
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 4.5e-42 176.0 360 43.3
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 1.7e-41 174.1 360 41.7
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 6.5e-41 172.2 390 40.5
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 1.2e-39 167.9 394 38.8
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 3.6e-39 166.4 396 39.1
A03p58570 Brassica napus HOM05D005514 ORTHO05D006563 6.1e-39 165.6 124 75.0
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 7.9e-39 165.2 378 40.5
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 1.7e-36 157.5 342 41.5
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 2.8e-36 156.8 381 38.3
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 1.1e-35 154.8 433 36.7
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.4e-35 154.5 389 39.3
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 1.2e-34 151.4 335 40.3
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 1.5e-34 151.0 381 37.8
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 2.0e-34 150.6 376 39.1
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 2.0e-34 150.6 379 37.5
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 2.0e-34 150.6 379 37.5
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 7.7e-34 148.7 412 36.9
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 7.7e-34 148.7 350 38.6
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.7e-33 147.5 363 38.6
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 1.7e-33 147.5 367 37.1
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 3.8e-33 146.4 386 39.4
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 5.0e-33 146.0 384 36.7
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 5.0e-33 146.0 390 38.7
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 1.5e-32 144.4 397 36.3
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.5e-32 144.4 387 37.2
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 1.9e-32 144.1 384 36.7
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 2.5e-32 143.7 364 38.7
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 2.5e-32 143.7 374 39.0
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.5e-32 143.7 410 36.6
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 2.7e-31 140.2 389 38.0
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 8.0e-31 138.7 401 36.4
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 3.0e-30 136.7 407 36.4
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 4.0e-30 136.3 389 37.0
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 5.2e-30 136.0 350 39.1
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.1e-29 134.8 390 35.1
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.0e-29 134.0 353 36.3
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 2.6e-29 133.7 327 38.5
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 3.3e-29 133.3 350 38.6
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 3.3e-29 133.3 383 35.8
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 4.4e-29 132.9 375 36.5
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 9.7e-29 131.7 390 35.4
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 3.7e-28 129.8 364 36.8
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 1.1e-27 128.3 404 33.9
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 2.4e-27 127.1 315 37.8
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 7.0e-27 125.6 376 37.8
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 4.5e-26 122.9 353 38.8
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 5.9e-26 122.5 315 37.5
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 7.7e-26 122.1 369 36.3
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 1.3e-25 121.3 369 36.3
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 2.2e-25 120.6 368 36.7
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 2.9e-25 120.2 326 36.8
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 2.9e-25 120.2 367 36.2
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 5.0e-25 119.4 316 38.3
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 5.0e-25 119.4 310 39.7
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 1.5e-24 117.9 311 37.9
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 1.9e-24 117.5 314 37.6
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.9e-24 117.5 393 33.3
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 4.2e-24 116.3 372 35.8
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 5.5e-24 115.9 316 38.0
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 9.4e-24 115.2 319 37.6
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 2.1e-23 114.0 325 37.5
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 4.7e-23 112.8 307 35.8
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 1.0e-22 111.7 335 36.7
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.4e-22 111.3 279 38.7
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 2.3e-22 110.5 316 35.4
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 3.0e-22 110.2 363 36.4
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 3.0e-22 110.2 178 43.8
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 4.0e-22 109.8 378 35.2
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 5.2e-22 109.4 334 35.6
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 8.8e-22 108.6 276 38.8
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 1.5e-21 107.8 199 40.2
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 7.5e-21 105.5 314 36.6
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 9.8e-21 105.1 456 30.9
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.3e-20 104.8 312 36.5
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.3e-20 104.8 376 33.5
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.8e-19 100.9 318 36.5
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 3.1e-19 100.1 289 35.3
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 4.1e-19 99.8 314 35.0
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 5.4e-19 99.4 179 42.5
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 7.0e-19 99.0 366 33.3
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.2e-18 98.2 308 37.0
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 2.9e-17 93.6 185 41.1
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 7.2e-16 89.0 159 43.4
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 2.1e-15 87.4 341 32.6
BcaC08g47141 Brassica carinata HOM05D005514 ORTHO05D006563 2.7e-15 87.0 58 79.3
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 3.6e-15 86.7 281 33.8
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 3.0e-14 83.6 229 37.1
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 4.0e-14 83.2 223 36.8
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 8.8e-14 82.0 447 29.3
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 4.4e-13 79.7 222 36.0
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 9.8e-13 78.6 326 31.3
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 2.2e-12 77.4 371 33.2
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 4.9e-12 76.3 314 32.5
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 6.3e-12 75.9 241 33.6
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 8.3e-12 75.5 206 35.4
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 8.3e-12 75.5 314 32.2
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 1.4e-11 74.7 365 32.3
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 3.1e-11 73.6 291 33.7
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.1e-08 65.1 256 31.2
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 3.3e-08 63.5 282 32.3
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 7.2e-08 62.4 257 32.3
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.1e-07 60.8 84 42.9
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 2.8e-07 60.5 285 29.8
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 1.0e-06 58.5 278 28.1
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.8e-06 57.8 140 36.4


User provided reference genes

Program Settings