Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p56420 Brassica napus HOM05D003512 ORTHO05D004013 1.0e-34 149.4 72 100.0
A03p58400 Brassica napus HOM05D003512 ORTHO05D004013 2.1e-27 125.2 65 90.8
BcaB03g12587 Brassica carinata HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
BcaC07g38359 Brassica carinata HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
BcaNung01368 Brassica carinata HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
BcaNung07172 Brassica carinata HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
A08p19920 Brassica napus HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
C01p10750 Brassica napus HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
C08p11070 Brassica napus HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
BolC1t01034H Brassica oleracea HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
BolC8t48776H Brassica oleracea HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
BraA08t33949Z Brassica rapa HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
CARHR236540 Cardamine hirsuta HOM05D003512 ORTHO05D004013 7.4e-09 63.5 37 89.2
Sp7g26760 Schrenkiella parvula HOM05D003512 ORTHO05D004013 9.7e-09 63.2 37 86.5
Aa31LG2G21620 Aethionema arabicum HOM05D003512 ORTHO05D004013 1.3e-08 62.8 37 83.8
Aa31LG8G17250 Aethionema arabicum HOM05D003512 ORTHO05D004013 1.3e-08 62.8 32 90.6
A01p09160 Brassica napus HOM05D003512 ORTHO05D004013 1.3e-08 62.8 32 90.6
BraA01t00862Z Brassica rapa HOM05D003512 ORTHO05D004013 1.3e-08 62.8 32 90.6
Carub.0007s1189 Capsella rubella HOM05D003512 ORTHO05D004013 1.3e-08 62.8 32 90.6
CARHR110760 Cardamine hirsuta HOM05D003512 ORTHO05D004013 1.3e-08 62.8 32 90.6
Thhalv10026332m.g Eutrema salsugineum HOM05D003512 ORTHO05D004013 1.3e-08 62.8 44 72.7
AL7G23750 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 1.7e-08 62.4 32 87.5
AT2G20260 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 1.7e-08 62.4 32 87.5
AT4G28750 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 1.7e-08 62.4 32 87.5
Carub.0003s3459 Capsella rubella HOM05D003512 ORTHO05D004013 2.8e-08 61.6 32 87.5
Thhalv10002106m.g Eutrema salsugineum HOM05D003512 ORTHO05D004013 2.8e-08 61.6 32 87.5
Sp3g33490 Schrenkiella parvula HOM05D003512 ORTHO05D004013 2.8e-08 61.6 32 87.5
AL3G47830 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 3.7e-08 61.2 32 84.4
MSTRG.21447 Avicennia marina HOM05D003512 ORTHO05D004013 3.7e-08 61.2 33 81.8
Duzib133G0561 Durio zibethinus HOM05D003512 ORTHO05D004013 3.7e-08 61.2 32 87.5
SGA_v2.0_scaffold1G00682 Striga asiatica HOM05D003512 ORTHO05D004013 3.7e-08 61.2 33 81.8
arahy.Tifrunner.gnm1.ann1.110G34 Arachis hypogaea HOM05D003512 ORTHO05D004013 6.3e-08 60.5 36 80.6
arahy.Tifrunner.gnm1.ann1.DHZ2RQ Arachis hypogaea HOM05D003512 ORTHO05D004013 6.3e-08 60.5 36 80.6
arahy.Tifrunner.gnm1.ann1.PI6GK2 Arachis hypogaea HOM05D003512 ORTHO05D004013 6.3e-08 60.5 36 80.6
BcaC06g32605 Brassica carinata HOM05D003512 ORTHO05D004013 6.3e-08 60.5 37 86.5
HanXRQChr11g0327281 Helianthus annuus HOM05D003512 ORTHO05D004013 6.3e-08 60.5 36 80.6
Lj5g0026666 Lotus japonicus HOM05D003512 ORTHO05D004013 6.3e-08 60.5 36 80.6
Medtr1g069235 Medicago truncatula HOM05D003512 ORTHO05D004013 6.3e-08 60.5 32 84.4
SalBow6G4606 Salvia bowleyana HOM05D003512 ORTHO05D004013 6.3e-08 60.5 36 77.8
TWI34G1801 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 6.3e-08 60.5 32 81.2
TWI59G0010 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 6.3e-08 60.5 32 81.2
arahy.Tifrunner.gnm1.ann1.HB1P9N Arachis hypogaea HOM05D003512 ORTHO05D004013 8.2e-08 60.1 36 77.8
CSS0050291 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
CAN.G771.48 Capsicum annuum HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Cpa.g.sc8.213 Carica papaya HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Ca_08765_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Ca_09628_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
COL.COLO4_36321 Corchorus olitorius HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
ECA236G1700 Erigeron canadensis HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Migut.D00498 Erythranthe guttata HOM05D003512 ORTHO05D004013 8.2e-08 60.1 33 78.8
Gohir.A07G202600 Gossypium hirsutum HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Gohir.D07G208800 Gossypium hirsutum HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Gohir.D08G056700 Gossypium hirsutum HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Gorai.001G235800 Gossypium raimondii HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Gorai.004G057800 Gossypium raimondii HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
HanXRQChr13g0408961 Helianthus annuus HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Hma1.2p1_0123F.1_g058160 Hydrangea macrophylla HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Lalb_Chr02g0152921 Lupinus albus HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Lalb_Chr21g0314191 Lupinus albus HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Manes.12G040000 Manihot esculenta HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Manes.13G042400 Manihot esculenta HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Peaxi162Scf00043g00067 Petunia axillaris HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Peaxi162Scf00517g00118 Petunia axillaris HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
PGR142G3520 Punica granatum HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
QL09p043416 Quercus lobata HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Rhsim05G0169700 Rhododendron simsii HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Solyc06g083680.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
Sopen06g035100 Solanum pennellii HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
PGSC0003DMG400020154 Solanum tuberosum HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
THA.LOC104820062 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 81.2
Thecc.01G245400 Theobroma cacao HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
TPR.G20608 Trifolium pratense HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
TWI32G0368 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
vmacro19972 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 8.2e-08 60.1 32 84.4
CAN.G311.8 Capsicum annuum HOM05D003512 ORTHO05D004013 1.1e-07 59.7 32 81.2
Cfa002510 Carpinus fangiana HOM05D003512 ORTHO05D004013 1.1e-07 59.7 39 64.1
PSO764G0144 Papaver somniferum HOM05D003512 ORTHO05D004013 1.1e-07 59.7 35 82.9
PSO832G4467 Papaver somniferum HOM05D003512 ORTHO05D004013 1.1e-07 59.7 35 82.9
Hund21755 Selenicereus undatus HOM05D003512 ORTHO05D004013 1.1e-07 59.7 32 81.2
Solyc09g063130.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 1.1e-07 59.7 32 81.2
Sopen09g025300 Solanum pennellii HOM05D003512 ORTHO05D004013 1.1e-07 59.7 32 81.2
PGSC0003DMG400022022 Solanum tuberosum HOM05D003512 ORTHO05D004013 1.1e-07 59.7 32 81.2
CANSAT01G3044 Cannabis sativa HOM05D003512 ORTHO05D004013 1.4e-07 59.3 32 81.2
CDE02G1659 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 1.4e-07 59.3 44 65.9
CDE09G0441 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 1.4e-07 59.3 44 65.9
Hund18341 Selenicereus undatus HOM05D003512 ORTHO05D004013 1.4e-07 59.3 36 77.8
Atru.chr5.1920 Acer truncatum HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
Ah.08g213830 Amaranthus hybridus HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
arahy.Tifrunner.gnm1.ann1.QW0L8Q Arachis hypogaea HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
arahy.Tifrunner.gnm1.ann1.TN6DUA Arachis hypogaea HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
EL10Ac7g17751 Beta vulgaris HOM05D003512 ORTHO05D004013 1.8e-07 58.9 43 65.1
CSS0026330 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 1.8e-07 58.9 65 47.7
AUR62008851 Chenopodium quinoa HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
AUR62025395 Chenopodium quinoa HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
Cc01_g17500 Coffea canephora HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
COL.COLO4_07003 Corchorus olitorius HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
Dinv19249 Davidia involucrata HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
Duzib211G0535 Durio zibethinus HOM05D003512 ORTHO05D004013 1.8e-07 58.9 35 82.9
ECA247G0853 Erigeron canadensis HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
Eucgr.H00828 Eucalyptus grandis HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
HanXRQChr10g0287201 Helianthus annuus HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
HanXRQChr15g0468101 Helianthus annuus HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
Lalb_Chr06g0170911 Lupinus albus HOM05D003512 ORTHO05D004013 1.8e-07 58.9 35 82.9
Nn1g03078 Nelumbo nucifera HOM05D003512 ORTHO05D004013 1.8e-07 58.9 39 64.1
Nn3g19853 Nelumbo nucifera HOM05D003512 ORTHO05D004013 1.8e-07 58.9 39 64.1
Oeu017338.1 Olea europaea HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
Oeu039643.2 Olea europaea HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
Oeu047197.1 Olea europaea HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
THA.LOC104804030 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 78.1
THA.LOC104814542 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 78.1
Thecc.05G265600 Theobroma cacao HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
vmacro02722 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
GSVIVG01028481001 Vitis vinifera HOM05D003512 ORTHO05D004013 1.8e-07 58.9 32 81.2
Ciclev10022750m.g Citrus clementina HOM05D003512 ORTHO05D004013 2.4e-07 58.5 32 81.2
Haze_24736 Corylus avellana HOM05D003512 ORTHO05D004013 2.4e-07 58.5 32 81.2
Dinv43039 Davidia involucrata HOM05D003512 ORTHO05D004013 2.4e-07 58.5 32 81.2
Eucgr.B02162 Eucalyptus grandis HOM05D003512 ORTHO05D004013 2.4e-07 58.5 31 83.9
Lsat_1_v5_gn_2_15600 Lactuca sativa HOM05D003512 ORTHO05D004013 2.4e-07 58.5 32 81.2
MBI07_g08920_MAGBIO Magnolia biondii HOM05D003512 ORTHO05D004013 2.4e-07 58.5 39 61.5
TWI23G0432 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 2.4e-07 58.5 32 78.1
CiPaw.03G273300 Carya illinoinensis HOM05D003512 ORTHO05D004013 3.1e-07 58.2 31 83.9
CiPaw.04G192200 Carya illinoinensis HOM05D003512 ORTHO05D004013 3.1e-07 58.2 31 83.9
DCAR_012618 Daucus carota HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
Duzib138G0098 Durio zibethinus HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
FvH4_2g19960 Fragaria vesca HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
FAN15G0220 Fragaria x ananassa HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
FAN24G0321 Fragaria x ananassa HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
FAN27G0931 Fragaria x ananassa HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
Gohir.A08G046200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
Gohir.A11G135000 Gossypium hirsutum HOM05D003512 ORTHO05D004013 3.1e-07 58.2 31 83.9
Gohir.D11G141200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 3.1e-07 58.2 31 83.9
Gorai.007G151500 Gossypium raimondii HOM05D003512 ORTHO05D004013 3.1e-07 58.2 31 83.9
Lsat_1_v5_gn_8_90440 Lactuca sativa HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 78.1
Lalb_Chr25g0289731 Lupinus albus HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
MD05G1183900 Malus domestica HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
MD10G1171800 Malus domestica HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
Medtr7g099390 Medicago truncatula HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
Nitab4.5_0001557g0070 Nicotiana tabacum HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
Nitab4.5_0004777g0040 Nicotiana tabacum HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
Phvul.008G133700 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 3.1e-07 58.2 31 83.9
Prupe.8G210000 Prunus persica HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
RcHm_v2.0_Chr6g0285621 Rosa chinensis HOM05D003512 ORTHO05D004013 3.1e-07 58.2 32 81.2
VMungo0720G2276 Vigna mungo HOM05D003512 ORTHO05D004013 3.1e-07 58.2 31 83.9
Aqoxy5G00078 Aquilegia oxysepala HOM05D003512 ORTHO05D004013 4.1e-07 57.8 32 78.1
Migut.N02242 Erythranthe guttata HOM05D003512 ORTHO05D004013 4.1e-07 57.8 36 75.0
Nitab4.5_0000385g0230 Nicotiana tabacum HOM05D003512 ORTHO05D004013 4.1e-07 57.8 32 78.1
Nitab4.5_0004333g0020 Nicotiana tabacum HOM05D003512 ORTHO05D004013 4.1e-07 57.8 32 78.1
TAR365G0283 Trochodendron aralioides HOM05D003512 ORTHO05D004013 4.1e-07 57.8 32 81.2
Potri.002G253800 Populus trichocarpa HOM05D003512 ORTHO05D004013 5.3e-07 57.4 32 78.1
Actinidia37567 Actinidia chinensis HOM05D003512 ORTHO05D004013 6.9e-07 57.0 32 78.1
Ah.15g093440 Amaranthus hybridus HOM05D003512 ORTHO05D004013 6.9e-07 57.0 31 80.6
Os07g0435300 Oryza sativa ssp. japonica HOM05D003512 ORTHO05D004013 6.9e-07 57.0 32 78.1
Rhsim13G0041600 Rhododendron simsii HOM05D003512 ORTHO05D004013 6.9e-07 57.0 32 78.1
ClCG11G010230 Citrullus lanatus HOM05D003512 ORTHO05D004013 9.1e-07 56.6 36 75.0
DCAR_018535 Daucus carota HOM05D003512 ORTHO05D004013 9.1e-07 56.6 32 78.1
Lsat_1_v5_gn_9_12001 Lactuca sativa HOM05D003512 ORTHO05D004013 9.1e-07 56.6 31 80.6
Oeu026192.1 Olea europaea HOM05D003512 ORTHO05D004013 9.1e-07 56.6 31 80.6
Sed0015250 Sechium edule HOM05D003512 ORTHO05D004013 9.1e-07 56.6 36 75.0
Actinidia30108 Actinidia chinensis HOM05D003512 ORTHO05D004013 1.2e-06 56.2 32 78.1
Glyma.10G042000 Glycine max HOM05D003512 ORTHO05D004013 1.2e-06 56.2 31 80.6
Glyma.10G042100 Glycine max HOM05D003512 ORTHO05D004013 1.2e-06 56.2 31 80.6
Glyma.13G129400 Glycine max HOM05D003512 ORTHO05D004013 1.2e-06 56.2 31 80.6
Glyma.13G129500 Glycine max HOM05D003512 ORTHO05D004013 1.2e-06 56.2 31 80.6
Phvul.007G155500 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 1.2e-06 56.2 31 80.6
Sabra02G0192900 Salix brachista HOM05D003512 ORTHO05D004013 1.2e-06 56.2 35 77.1
Sed0000934 Sechium edule HOM05D003512 ORTHO05D004013 1.2e-06 56.2 36 72.2
unitig_22.g6316 Utricularia gibba HOM05D003512 ORTHO05D004013 1.2e-06 56.2 33 69.7
CsaV3_2G010090 Cucumis sativus L. HOM05D003512 ORTHO05D004013 2.0e-06 55.5 36 72.2
HanXRQChr01g0014791 Helianthus annuus HOM05D003512 ORTHO05D004013 2.0e-06 55.5 32 75.0
TAR362G0114 Trochodendron aralioides HOM05D003512 ORTHO05D004013 2.0e-06 55.5 35 80.0
HPP92_027295 Vanilla planifolia HOM05D003512 ORTHO05D004013 2.0e-06 55.5 32 71.9
Hma1.2p1_1393F.1_g280270 Hydrangea macrophylla HOM05D003512 ORTHO05D004013 3.4e-06 54.7 31 74.2
unitig_85.g27272 Utricularia gibba HOM05D003512 ORTHO05D004013 3.4e-06 54.7 33 69.7
Zm00001eb096870 Zea mays HOM05D003512 ORTHO05D004013 3.4e-06 54.7 35 77.1
Zm00001eb306070 Zea mays HOM05D003512 ORTHO05D004013 4.5e-06 54.3 35 74.3


User provided reference genes

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