Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 1.7e-97 359.4 183 100.0
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 8.0e-84 313.9 184 90.8
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 9.2e-80 300.4 188 90.4
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 9.2e-80 300.4 188 90.4
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 3.3e-61 238.8 199 73.4
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 3.3e-61 238.8 199 73.4
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 8.9e-59 230.7 201 68.7
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.1e-56 223.8 203 68.0
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 3.2e-56 222.2 202 66.8
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 1.0e-54 217.2 200 66.0
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 5.1e-54 214.9 199 66.8
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 8.6e-54 214.2 203 64.5
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 3.3e-53 212.2 204 64.7
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 3.3e-53 212.2 204 64.7
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 3.3e-53 212.2 184 67.9
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 1.2e-52 210.3 194 65.5
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 6.2e-52 208.0 183 65.6
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 1.8e-51 206.5 201 61.7
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 4.0e-51 205.3 187 65.2
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 6.8e-51 204.5 187 65.2
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.2e-50 203.8 207 61.4
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 8.4e-49 197.6 197 61.4
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 4.6e-47 191.8 190 60.0
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 7.8e-47 191.0 197 57.9
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.7e-46 189.9 204 60.3
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 4.0e-43 178.7 199 56.8
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 5.3e-35 151.8 197 48.7
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 1.7e-33 146.7 200 51.5
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 5.6e-29 131.7 205 41.5
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.1e-27 127.5 197 40.6
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.5e-26 123.6 234 36.8
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 3.4e-26 122.5 195 43.6
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 4.5e-26 122.1 227 38.3
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 4.5e-26 122.1 227 38.3
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.3e-25 120.6 165 44.2
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 1.7e-25 120.2 231 39.4
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.7e-25 120.2 199 40.7
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 2.9e-25 119.4 209 40.2
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 4.9e-25 118.6 206 40.3
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 4.9e-25 118.6 207 39.6
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 6.4e-25 118.2 185 42.7
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 6.4e-25 118.2 205 39.0
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 8.4e-25 117.9 194 39.7
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.1e-24 117.5 217 37.8
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.1e-24 117.5 172 40.7
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 1.4e-24 117.1 212 38.7
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.9e-24 116.7 203 39.4
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.4e-24 116.3 211 39.8
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 4.2e-24 115.5 226 39.8
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 5.5e-24 115.2 189 41.8
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 9.3e-24 114.4 217 40.1
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 1.6e-23 113.6 162 42.6
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.7e-23 112.8 202 41.1
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 2.7e-23 112.8 195 39.5
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.7e-23 112.8 204 38.7
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 4.6e-23 112.1 218 35.8
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 2.3e-22 109.8 222 38.3
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 3.9e-22 109.0 124 47.6
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 3.9e-22 109.0 203 39.4
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 5.1e-22 108.6 198 41.4
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 1.1e-21 107.5 228 39.5
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.1e-21 107.5 203 37.9
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.9e-21 106.7 202 35.6
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.5e-21 106.3 177 41.2
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 4.3e-21 105.5 222 37.4
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 5.6e-21 105.1 177 40.1
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 7.4e-21 104.8 219 37.4
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 2.1e-20 103.2 174 40.8
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 2.1e-20 103.2 155 40.6
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 2.8e-20 102.8 174 37.9
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 2.8e-20 102.8 182 40.1
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.8e-20 102.8 177 40.7
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 3.7e-20 102.4 215 37.2
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 4.8e-20 102.1 109 49.5
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 6.2e-20 101.7 97 52.6
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 8.2e-20 101.3 93 54.8
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 8.2e-20 101.3 188 36.7
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 1.4e-19 100.5 163 40.5
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 3.1e-19 99.4 222 36.5
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 3.1e-19 99.4 95 53.7
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 5.3e-19 98.6 76 57.9
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 5.3e-19 98.6 182 40.1
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 5.3e-19 98.6 214 33.6
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 9.0e-19 97.8 225 35.1
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 9.0e-19 97.8 182 39.6
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 1.2e-18 97.4 180 40.6
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.2e-18 97.4 103 51.5
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.5e-18 97.1 204 34.8
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.0e-18 96.7 164 38.4
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 2.0e-18 96.7 173 39.3
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 2.6e-18 96.3 198 33.8
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 2.6e-18 96.3 116 47.4
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 2.6e-18 96.3 99 50.5
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 3.4e-18 95.9 150 44.7
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 4.5e-18 95.5 201 35.3
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 4.5e-18 95.5 92 52.2
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 1.0e-17 94.4 154 39.6
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.0e-17 94.4 221 36.2
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 1.3e-17 94.0 184 38.6
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.3e-17 94.0 209 34.4
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 1.3e-17 94.0 224 34.4
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 1.7e-17 93.6 115 44.3
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 2.2e-17 93.2 193 34.7
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 2.2e-17 93.2 171 36.8
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.9e-17 92.8 148 39.9
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 4.9e-17 92.0 161 37.3
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 4.9e-17 92.0 181 38.1
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.5e-17 91.7 201 34.8
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 8.4e-17 91.3 74 56.8
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 8.4e-17 91.3 93 48.4
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 8.4e-17 91.3 225 31.1
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 1.9e-16 90.1 162 42.0
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.9e-16 90.1 177 35.6
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.5e-16 89.7 209 33.5
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 2.5e-16 89.7 192 34.4
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 2.5e-16 89.7 165 35.8
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 3.2e-16 89.4 77 53.2
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 7.1e-16 88.2 206 34.0
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 7.1e-16 88.2 181 35.9
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.2e-15 87.4 109 48.6
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.6e-15 87.0 113 54.0
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 2.7e-15 86.3 76 51.3
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 7.9e-15 84.7 220 34.1
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 1.3e-14 84.0 198 34.3
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 1.3e-14 84.0 93 46.2
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.8e-14 83.6 220 34.1
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 2.3e-14 83.2 72 52.8
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 3.0e-14 82.8 197 34.0
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 8.7e-14 81.3 122 36.9
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 8.7e-14 81.3 84 45.2
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 2.5e-13 79.7 197 33.5
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 2.5e-13 79.7 81 48.1
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 3.3e-13 79.3 105 54.3
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 4.3e-13 79.0 208 31.7
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 7.4e-13 78.2 81 48.1
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 1.3e-12 77.4 77 49.4
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.3e-12 77.4 105 53.3
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.3e-12 77.4 180 35.0
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 1.3e-12 77.4 118 39.8
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.8e-12 76.3 184 35.3
A01p19730 Brassica napus HOM05D004801 ORTHO05D005747 4.8e-12 75.5 82 57.3
BolC3t18785H Brassica oleracea HOM05D004801 ORTHO05D004735 1.4e-11 73.9 105 52.4
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 3.1e-11 72.8 205 30.7
BcaC03g17563 Brassica carinata HOM05D000889 ORTHO05D027509 4.1e-11 72.4 76 61.8
BolC2t11588H Brassica oleracea HOM05D004801 ORTHO05D005747 7.7e-10 68.2 84 59.5
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 1.3e-09 67.4 163 37.4
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.7e-09 67.0 76 42.1
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 2.9e-09 66.2 191 31.4
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 5.0e-09 65.5 83 39.8
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 2.1e-07 60.1 86 51.2
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 6.7e-06 55.1 177 28.8


User provided reference genes

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