Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p55870 Brassica napus HOM05D007179 ORTHO05D009124 1.2e-83 313.2 166 100.0
BraA03t14832Z Brassica rapa HOM05D007179 ORTHO05D009124 3.5e-78 295.0 166 94.0
A03p57660 Brassica napus HOM05D007179 ORTHO05D009124 7.8e-78 293.9 166 94.0
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 9.5e-76 287.0 167 94.6
BcaC06g32651 Brassica carinata HOM05D007179 ORTHO05D009124 2.9e-72 275.4 161 91.9
Sp7g25970 Schrenkiella parvula HOM05D007179 ORTHO05D009124 6.0e-62 241.1 164 81.1
C01p24450 Brassica napus HOM05D007179 ORTHO05D009124 9.6e-60 233.8 170 79.4
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 2.4e-58 229.2 169 79.3
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 2.4e-58 229.2 169 79.3
BcaNung01603 Brassica carinata HOM05D007179 ORTHO05D009124 8.9e-58 227.3 170 77.6
Thhalv10026434m.g Eutrema salsugineum HOM05D007179 ORTHO05D009124 1.2e-54 216.9 163 74.2
AL7G24590 Arabidopsis lyrata HOM05D007179 ORTHO05D009124 6.0e-54 214.5 165 73.9
AT4G28025 Arabidopsis thaliana HOM05D007179 ORTHO05D009124 2.3e-53 212.6 166 74.7
Carub.0007s1277 Capsella rubella HOM05D007179 ORTHO05D009124 1.1e-52 210.3 166 73.5
CARHR235720 Cardamine hirsuta HOM05D007179 ORTHO05D009124 1.7e-48 196.4 172 69.2
BolC1t02394H Brassica oleracea HOM05D007179 ORTHO05D009124 5.4e-47 191.4 118 86.4
Aa31LG3G160 Aethionema arabicum HOM05D007179 ORTHO05D009124 9.9e-41 170.6 161 64.0
THA.LOC104817810 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 4.0e-34 148.7 161 59.0
THA.LOC104811817 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 1.3e-32 143.7 153 58.2
Rhsim01G0010000 Rhododendron simsii HOM05D007179 ORTHO05D009124 6.5e-32 141.4 120 65.8
CANSAT11G0330 Cannabis sativa HOM05D007179 ORTHO05D009124 2.5e-31 139.4 130 59.2
CSS0047035 Camellia sinensis var. sinensis HOM05D007179 ORTHO05D009124 1.0e-29 134.0 157 52.2
Prupe.1G095600 Prunus persica HOM05D007179 ORTHO05D009124 1.0e-29 134.0 123 60.2
CiPaw.08G039500 Carya illinoinensis HOM05D007179 ORTHO05D009124 1.8e-29 133.3 120 62.5
SalBow1G0390 Salvia bowleyana HOM05D007179 ORTHO05D009124 1.8e-29 133.3 119 63.9
MD16G1263600 Malus domestica HOM05D007179 ORTHO05D009124 2.3e-29 132.9 117 62.4
Cpa.g.c29666.1 Carica papaya HOM05D007179 ORTHO05D009124 3.0e-29 132.5 128 57.0
MSTRG.26242 Avicennia marina HOM05D007179 ORTHO05D009124 5.1e-29 131.7 120 61.7
Cc06_g13840 Coffea canephora HOM05D007179 ORTHO05D009124 8.7e-29 131.0 130 59.2
GSVIVG01032307001 Vitis vinifera HOM05D007179 ORTHO05D009124 1.9e-28 129.8 125 56.8
PGSC0003DMG400027448 Solanum tuberosum HOM05D007179 ORTHO05D009124 2.5e-28 129.4 101 69.3
CiPaw.07G187200 Carya illinoinensis HOM05D007179 ORTHO05D009124 3.3e-28 129.0 113 63.7
Dinv41297 Davidia involucrata HOM05D007179 ORTHO05D009124 4.3e-28 128.6 111 64.0
TAR626G0641 Trochodendron aralioides HOM05D007179 ORTHO05D009124 5.7e-28 128.3 113 60.2
Sed0008122 Sechium edule HOM05D007179 ORTHO05D009124 7.4e-28 127.9 113 62.8
Solyc07g006490.3 Solanum lycopersicum HOM05D007179 ORTHO05D009124 7.4e-28 127.9 101 68.3
Sopen07g002570 Solanum pennellii HOM05D007179 ORTHO05D009124 7.4e-28 127.9 101 69.3
Gorai.009G007600 Gossypium raimondii HOM05D007179 ORTHO05D009124 9.6e-28 127.5 145 54.5
Potri.006G175600 Populus trichocarpa HOM05D007179 ORTHO05D009124 9.6e-28 127.5 113 62.8
Oeu058831.1 Olea europaea HOM05D007179 ORTHO05D009124 1.3e-27 127.1 158 50.0
Gohir.D05G007500 Gossypium hirsutum HOM05D007179 ORTHO05D009124 1.6e-27 126.7 145 54.5
Psat0s236g0160 Pisum sativum HOM05D007179 ORTHO05D009124 2.1e-27 126.3 113 60.2
Nn1g04316 Nelumbo nucifera HOM05D007179 ORTHO05D009124 3.7e-27 125.6 113 61.9
PGR102G1777 Punica granatum HOM05D007179 ORTHO05D009124 4.8e-27 125.2 156 51.9
Thecc.09G162500 Theobroma cacao HOM05D007179 ORTHO05D009124 4.8e-27 125.2 101 67.3
Medtr4g129320 Medicago truncatula HOM05D007179 ORTHO05D009124 8.2e-27 124.4 113 61.1
Atru.chr7.533 Acer truncatum HOM05D007179 ORTHO05D009124 1.1e-26 124.0 120 56.7
arahy.Tifrunner.gnm1.ann1.8TJD28 Arachis hypogaea HOM05D007179 ORTHO05D009124 1.1e-26 124.0 113 60.2
FvH4_4g08570 Fragaria vesca HOM05D007179 ORTHO05D009124 1.4e-26 123.6 113 60.2
TWI63G0613 Tripterygium wilfordii HOM05D007179 ORTHO05D009124 1.4e-26 123.6 113 59.3
arahy.Tifrunner.gnm1.ann1.7FN6WP Arachis hypogaea HOM05D007179 ORTHO05D009124 1.8e-26 123.2 113 60.2
Nitab4.5_0011540g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 1.8e-26 123.2 106 64.2
RcHm_v2.0_Chr4g0404651 Rosa chinensis HOM05D007179 ORTHO05D009124 1.8e-26 123.2 113 61.1
Gohir.A05G006600 Gossypium hirsutum HOM05D007179 ORTHO05D009124 3.1e-26 122.5 145 52.4
Migut.K00269 Erythranthe guttata HOM05D007179 ORTHO05D009124 4.0e-26 122.1 114 61.4
Peaxi162Scf00457g00318 Petunia axillaris HOM05D007179 ORTHO05D009124 4.0e-26 122.1 101 66.3
Actinidia24032 Actinidia chinensis HOM05D007179 ORTHO05D009124 5.3e-26 121.7 102 66.7
Lalb_Chr13g0300481 Lupinus albus HOM05D007179 ORTHO05D009124 5.3e-26 121.7 113 61.1
Sabra06G0134300 Salix brachista HOM05D007179 ORTHO05D009124 5.3e-26 121.7 113 58.4
ECA236G0374 Erigeron canadensis HOM05D007179 ORTHO05D009124 6.9e-26 121.3 113 60.2
Eucgr.C02437 Eucalyptus grandis HOM05D007179 ORTHO05D009124 1.5e-25 120.2 114 57.0
MBI15_g26085_MAGBIO Magnolia biondii HOM05D007179 ORTHO05D009124 2.0e-25 119.8 100 64.0
vmacro13080 Vaccinium macrocarpon HOM05D007179 ORTHO05D009124 2.0e-25 119.8 82 72.0
Hund08993 Selenicereus undatus HOM05D007179 ORTHO05D009124 4.5e-25 118.6 99 63.6
AUR62040282 Chenopodium quinoa HOM05D007179 ORTHO05D009124 2.9e-24 115.9 135 52.6
Aqoxy7G03201 Aquilegia oxysepala HOM05D007179 ORTHO05D009124 3.8e-24 115.5 144 47.9
Lsat_1_v5_gn_8_65641 Lactuca sativa HOM05D007179 ORTHO05D009124 3.8e-24 115.5 131 54.2
ClCG11G012230 Citrullus lanatus HOM05D007179 ORTHO05D009124 5.0e-24 115.2 113 61.1
CAN.G584.44 Capsicum annuum HOM05D007179 ORTHO05D009124 1.1e-23 114.0 89 70.8
HanXRQChr05g0136491 Helianthus annuus HOM05D007179 ORTHO05D009124 1.4e-23 113.6 91 64.8
MELO3C004033.2 Cucumis melo HOM05D007179 ORTHO05D009124 1.9e-23 113.2 121 56.2
DCAR_017946 Daucus carota HOM05D007179 ORTHO05D009124 3.2e-23 112.5 90 70.0
Ciclev10009752m.g Citrus clementina HOM05D007179 ORTHO05D009124 7.1e-23 111.3 119 56.3
Lj9A729T43 Lonicera japonica HOM05D007179 ORTHO05D009124 7.1e-23 111.3 116 60.3
Manes.06G029800 Manihot esculenta HOM05D007179 ORTHO05D009124 9.3e-23 110.9 98 59.2
CsaV3_2G008330 Cucumis sativus L. HOM05D007179 ORTHO05D009124 1.2e-22 110.5 100 60.0
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 2.1e-22 109.8 95 65.3
Glyma.17G067900 Glycine max HOM05D007179 ORTHO05D009124 2.7e-22 109.4 143 49.0
EL10Ac8g18859 Beta vulgaris HOM05D007179 ORTHO05D009124 4.6e-22 108.6 81 69.1
Lj4g0019685 Lotus japonicus HOM05D007179 ORTHO05D009124 4.6e-22 108.6 127 49.6
VMungo1215G3157 Vigna mungo HOM05D007179 ORTHO05D009124 4.6e-22 108.6 128 53.1
BcaC09g50519 Brassica carinata HOM05D000147 ORTHO05D013131 7.9e-22 107.8 61 85.2
FAN22G0121 Fragaria x ananassa HOM05D007179 ORTHO05D009124 1.0e-21 107.5 78 69.2
PSO063G6628 Papaver somniferum HOM05D007179 ORTHO05D009124 1.0e-21 107.5 100 60.0
PSO782G3484 Papaver somniferum HOM05D007179 ORTHO05D009124 1.0e-21 107.5 100 60.0
unitig_37.g12688 Utricularia gibba HOM05D007179 ORTHO05D009124 1.3e-21 107.1 123 52.0
Duzib150G1658 Durio zibethinus HOM05D007179 ORTHO05D009124 5.1e-21 105.1 85 67.1
Sc14g0001110 Simmondsia chinensis HOM05D007179 ORTHO05D009124 6.7e-21 104.8 87 64.4
AUR62039974 Chenopodium quinoa HOM05D007179 ORTHO05D009124 1.1e-20 104.0 135 50.4
Phvul.003G150500 Phaseolus vulgaris HOM05D007179 ORTHO05D009124 1.3e-19 100.5 102 54.9
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 2.2e-19 99.8 84 63.1
Actinidia24777 Actinidia chinensis HOM05D007179 ORTHO05D009124 3.7e-19 99.0 122 50.8
FAN17G2417 Fragaria x ananassa HOM05D007179 ORTHO05D009124 4.8e-19 98.6 71 69.0
Mapoly0124s0027 Marchantia polymorpha HOM05D007179 ORTHO05D009124 2.4e-18 96.3 117 46.2
Hund26395 Selenicereus undatus HOM05D007179 ORTHO05D009124 2.4e-18 96.3 86 64.0
ATR0580G253 Amborella trichopoda HOM05D007179 ORTHO05D009124 5.3e-18 95.1 92 55.4
CDE02G2992 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 5.3e-18 95.1 95 53.7
CDE05G2983 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 1.2e-17 94.0 95 53.7
Nitab4.5_0002004g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 3.4e-17 92.4 71 66.2
HPP92_018535 Vanilla planifolia HOM05D007179 ORTHO05D009124 1.0e-16 90.9 100 49.0
Zm00001eb246810 Zea mays HOM05D007179 ORTHO05D009124 6.5e-16 88.2 125 49.6
Medtr4g129300 Medicago truncatula HOM05D007179 ORTHO05D009124 4.2e-15 85.5 63 68.3
SMO358G0032 Selaginella moellendorffii HOM05D007179 ORTHO05D009124 7.2e-15 84.7 87 54.0
Pp3c12_25950 Physcomitrium patens HOM05D007179 ORTHO05D009124 1.2e-14 84.0 91 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2423 Anthoceros agrestis HOM05D007179 ORTHO05D009124 4.6e-14 82.0 146 37.7
SGA_v2.0_scaffold325G48698 Striga asiatica HOM05D007179 ORTHO05D009124 7.9e-14 81.3 75 58.7
BcaC09g50518 Brassica carinata HOM05D005733 ORTHO05D007442 4.8e-11 72.0 80 62.5
Haze_22155 Corylus avellana HOM05D007179 ORTHO05D009124 2.6e-09 66.2 44 63.6
Haze_22156 Corylus avellana HOM05D007179 ORTHO05D009124 1.0e-08 64.3 73 57.5


User provided reference genes

Program Settings