Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p54800 Brassica napus HOM05D004778 ORTHO05D005679 5.4e-21 103.6 60 100.0
BolC7t45969H Brassica oleracea HOM05D004778 ORTHO05D005679 1.6e-20 102.1 60 96.7
A03p56600 Brassica napus HOM05D004778 ORTHO05D005679 3.5e-20 100.9 60 95.0
BraA03t14730Z Brassica rapa HOM05D004778 ORTHO05D005679 4.6e-20 100.5 60 95.0
BcaC06g32759 Brassica carinata HOM05D004778 ORTHO05D005679 2.3e-19 98.2 60 93.3
AT4G26320 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 6.2e-17 90.1 60 85.0
A01p17570 Brassica napus HOM05D004778 ORTHO05D005679 1.8e-16 88.6 60 85.0
BraA01t01710Z Brassica rapa HOM05D004778 ORTHO05D005679 1.8e-16 88.6 60 85.0
AL7G26630 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 2.3e-16 88.2 60 83.3
BcaNung02429 Brassica carinata HOM05D004778 ORTHO05D005679 4.0e-16 87.4 60 85.0
BcaC09g50690 Brassica carinata HOM05D004778 ORTHO05D005679 6.8e-16 86.7 60 83.3
C01p22170 Brassica napus HOM05D004778 ORTHO05D005679 6.8e-16 86.7 60 83.3
BolC1t02147H Brassica oleracea HOM05D004778 ORTHO05D005679 6.8e-16 86.7 60 83.3
Thhalv10027232m.g Eutrema salsugineum HOM05D004778 ORTHO05D005679 8.9e-16 86.3 60 83.3
Carub.0007s1462 Capsella rubella HOM05D004778 ORTHO05D005679 1.2e-15 85.9 60 81.7
CARHR233890 Cardamine hirsuta HOM05D004778 ORTHO05D005679 2.9e-14 81.3 60 76.7
Sp6g18330 Schrenkiella parvula HOM05D004778 ORTHO05D005679 1.6e-12 75.5 61 77.0
Carub.0008s1702 Capsella rubella HOM05D004778 ORTHO05D005679 2.1e-12 75.1 61 75.4
AL8G32300 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 4.6e-12 73.9 61 73.8
CARHR270190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 1.3e-11 72.4 61 75.4
Cpa.g.sc119.43 Carica papaya HOM05D004778 ORTHO05D005679 1.3e-11 72.4 60 68.3
BcaC03g14215 Brassica carinata HOM05D004778 ORTHO05D005679 3.0e-11 71.2 61 70.5
C02p15150 Brassica napus HOM05D004778 ORTHO05D005679 3.0e-11 71.2 61 70.5
BolC2t07632H Brassica oleracea HOM05D004778 ORTHO05D005679 3.0e-11 71.2 61 70.5
Aa31LG3G12430 Aethionema arabicum HOM05D004778 ORTHO05D005679 5.1e-11 70.5 61 68.9
A02p09020 Brassica napus HOM05D004778 ORTHO05D005679 8.6e-11 69.7 61 70.5
BraA02t05971Z Brassica rapa HOM05D004778 ORTHO05D005679 8.6e-11 69.7 61 70.5
AT5G56540 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 1.1e-10 69.3 61 68.9
Potri.003G220900 Populus trichocarpa HOM05D004778 ORTHO05D005679 1.1e-10 69.3 60 65.0
MD03G1004000 Malus domestica HOM05D004778 ORTHO05D005679 1.5e-10 68.9 61 70.5
Cfa009564 Carpinus fangiana HOM05D004778 ORTHO05D005679 4.3e-10 67.4 61 63.9
BcaB01g04406 Brassica carinata HOM05D004778 ORTHO05D005679 9.5e-10 66.2 61 68.9
CiPaw.14G136700 Carya illinoinensis HOM05D004778 ORTHO05D005679 1.2e-09 65.9 60 63.3
BcaC04g20076 Brassica carinata HOM05D004778 ORTHO05D005679 1.6e-09 65.5 61 68.9
C09p48130 Brassica napus HOM05D004778 ORTHO05D005679 1.6e-09 65.5 61 68.9
BolC9t57665H Brassica oleracea HOM05D004778 ORTHO05D005679 1.6e-09 65.5 61 68.9
A10p13910 Brassica napus HOM05D004778 ORTHO05D005679 2.8e-09 64.7 61 67.2
BraA10t43484Z Brassica rapa HOM05D004778 ORTHO05D005679 2.8e-09 64.7 61 67.2
Thecc.05G250100 Theobroma cacao HOM05D004778 ORTHO05D005679 2.8e-09 64.7 60 65.0
TAR633G1575 Trochodendron aralioides HOM05D004778 ORTHO05D005679 3.6e-09 64.3 60 61.7
Rhsim13G0232700 Rhododendron simsii HOM05D004778 ORTHO05D005679 4.7e-09 63.9 61 65.6
Potri.019G035500 Populus trichocarpa HOM05D004778 ORTHO05D005679 8.1e-09 63.2 60 60.0
Cfa001534 Carpinus fangiana HOM05D004778 ORTHO05D005679 1.1e-08 62.8 61 65.6
Nn2g15855 Nelumbo nucifera HOM05D004778 ORTHO05D005679 1.1e-08 62.8 60 61.7
TAR623G1546 Trochodendron aralioides HOM05D004778 ORTHO05D005679 1.1e-08 62.8 60 58.3
Manes.08G144900 Manihot esculenta HOM05D004778 ORTHO05D005679 1.4e-08 62.4 58 60.3
Hma1.2p1_0152F.1_g067660 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 1.8e-08 62.0 60 60.0
Manes.09G140700 Manihot esculenta HOM05D004778 ORTHO05D005679 1.8e-08 62.0 60 61.7
Duzib177G0058 Durio zibethinus HOM05D004778 ORTHO05D005679 2.3e-08 61.6 60 58.3
Hma1.2p1_0589F.1_g184910 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 2.3e-08 61.6 60 60.0
Gohir.D11G246400 Gossypium hirsutum HOM05D004778 ORTHO05D005679 3.1e-08 61.2 60 58.3
Potri.013G057500 Populus trichocarpa HOM05D004778 ORTHO05D005679 3.1e-08 61.2 58 60.3
PGR102G2573 Punica granatum HOM05D004778 ORTHO05D005679 4.0e-08 60.8 61 60.7
Prupe.6G003500 Prunus persica HOM05D004778 ORTHO05D005679 6.8e-08 60.1 61 62.3
Duzib128G0115 Durio zibethinus HOM05D004778 ORTHO05D005679 8.9e-08 59.7 60 58.3
AT3G13520 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 1.5e-07 58.9 61 62.3
CARHR088190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 2.6e-07 58.2 62 61.3
Duzib106G1560 Durio zibethinus HOM05D004778 ORTHO05D005679 2.6e-07 58.2 60 56.7
THA.LOC109116609 Tarenaya hassleriana HOM05D004778 ORTHO05D005679 2.6e-07 58.2 62 67.7
BcaNung06233 Brassica carinata HOM05D004778 ORTHO05D005679 3.4e-07 57.8 62 59.7
BolC5t34103H Brassica oleracea HOM05D004778 ORTHO05D005679 3.4e-07 57.8 62 59.7
PSO339G4337 Papaver somniferum HOM05D004778 ORTHO05D005679 3.4e-07 57.8 60 56.7
PSO384G2791 Papaver somniferum HOM05D004778 ORTHO05D005679 3.4e-07 57.8 60 56.7
TWI32G0653 Tripterygium wilfordii HOM05D004778 ORTHO05D005679 3.4e-07 57.8 60 55.0
Duzib106G0337 Durio zibethinus HOM05D004778 ORTHO05D005679 4.4e-07 57.4 60 55.0
Gohir.A13G099600 Gossypium hirsutum HOM05D004778 ORTHO05D005679 4.4e-07 57.4 60 55.0
Potri.001G004100 Populus trichocarpa HOM05D004778 ORTHO05D005679 4.4e-07 57.4 60 58.3
BcaC01g01515 Brassica carinata HOM05D004778 ORTHO05D005679 5.8e-07 57.0 59 62.7
C03p92630 Brassica napus HOM05D004778 ORTHO05D005679 5.8e-07 57.0 59 62.7
BolC3t21577H Brassica oleracea HOM05D004778 ORTHO05D005679 5.8e-07 57.0 59 62.7
PSO384G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 5.8e-07 57.0 60 56.7
BraA05t22399Z Brassica rapa HOM05D004778 ORTHO05D005679 9.9e-07 56.2 62 58.1
Sabra03G0164400 Salix brachista HOM05D004778 ORTHO05D005679 9.9e-07 56.2 53 58.5
Sp1g41010 Schrenkiella parvula HOM05D004778 ORTHO05D005679 1.3e-06 55.8 62 64.5
BcaB04g16964 Brassica carinata HOM05D004778 ORTHO05D005679 2.2e-06 55.1 59 61.0
Eucgr.K01501 Eucalyptus grandis HOM05D004778 ORTHO05D005679 2.2e-06 55.1 57 59.6
PGR142G3834 Punica granatum HOM05D004778 ORTHO05D005679 2.2e-06 55.1 61 59.0
BcaC08g43615 Brassica carinata HOM05D004778 ORTHO05D005679 2.9e-06 54.7 62 61.3
C06p10290 Brassica napus HOM05D004778 ORTHO05D005679 2.9e-06 54.7 62 61.3
Aa31LG8G720 Aethionema arabicum HOM05D004778 ORTHO05D005679 3.7e-06 54.3 54 61.1
BolC6t36104H Brassica oleracea HOM05D004778 ORTHO05D005679 3.7e-06 54.3 62 59.7
Aqoxy1G00473 Aquilegia oxysepala HOM05D004778 ORTHO05D005679 4.9e-06 53.9 60 50.0
Aqoxy2G00513 Aquilegia oxysepala HOM05D004778 ORTHO05D005679 4.9e-06 53.9 58 55.2
A08p00710 Brassica napus HOM05D004778 ORTHO05D005679 4.9e-06 53.9 59 59.3
BraA08t32128Z Brassica rapa HOM05D004778 ORTHO05D005679 4.9e-06 53.9 59 59.3
PSO339G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 4.9e-06 53.9 60 55.0
Sabra19G0043900 Salix brachista HOM05D004778 ORTHO05D005679 4.9e-06 53.9 61 52.5
Sabra19G0047200 Salix brachista HOM05D004778 ORTHO05D005679 4.9e-06 53.9 61 52.5
BcaC08g44193 Brassica carinata HOM05D004778 ORTHO05D005679 6.4e-06 53.5 62 61.3
A05p17520 Brassica napus HOM05D004778 ORTHO05D005679 6.4e-06 53.5 62 61.3
BolC6t36791H Brassica oleracea HOM05D004778 ORTHO05D005679 6.4e-06 53.5 62 61.3
BraA05t20646Z Brassica rapa HOM05D004778 ORTHO05D005679 6.4e-06 53.5 62 61.3
AL3G25430 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 8.4e-06 53.1 61 57.4


User provided reference genes

Program Settings