Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 1.8e-59 232.3 109 100.0
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 5.5e-56 220.7 109 95.4
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 7.2e-56 220.3 126 85.7
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 3.9e-54 214.5 107 91.6
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 2.6e-53 211.8 109 89.0
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 3.3e-53 211.5 109 89.9
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 4.1e-51 204.5 109 88.1
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 7.7e-50 200.3 107 85.0
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 1.3e-49 199.5 107 85.0
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 5.0e-49 197.6 131 74.0
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 6.5e-49 197.2 102 87.3
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 2.5e-48 195.3 126 76.2
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 2.5e-48 195.3 126 76.2
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 4.7e-47 191.0 126 73.8
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 6.1e-47 190.7 126 73.8
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 6.5e-41 170.6 121 66.9
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 4.7e-39 164.5 107 70.1
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 2.0e-34 149.1 79 83.5
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 1.0e-33 146.7 126 60.3
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 3.6e-31 138.3 105 59.0
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 6.1e-31 137.5 105 61.0
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 1.0e-30 136.7 105 60.0
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 1.4e-30 136.3 105 58.1
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 1.4e-30 136.3 105 59.0
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 1.4e-30 136.3 98 60.2
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 1.4e-30 136.3 105 59.0
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 1.8e-30 136.0 108 59.3
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 2.3e-30 135.6 104 58.7
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 2.3e-30 135.6 105 58.1
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 3.0e-30 135.2 105 59.0
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 3.0e-30 135.2 105 56.2
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 4.0e-30 134.8 99 61.6
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 4.0e-30 134.8 105 59.0
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 5.2e-30 134.4 105 59.0
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 1.2e-29 133.3 106 58.5
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 1.2e-29 133.3 105 57.1
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 2.0e-29 132.5 104 59.6
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 4.4e-29 131.3 105 57.1
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 4.4e-29 131.3 109 56.9
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 5.7e-29 131.0 103 55.3
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 5.7e-29 131.0 105 59.0
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 5.7e-29 131.0 105 59.0
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 7.5e-29 130.6 105 57.1
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 7.5e-29 130.6 102 57.8
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 9.8e-29 130.2 94 62.8
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 1.7e-28 129.4 98 56.1
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 1.7e-28 129.4 107 57.0
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 2.2e-28 129.0 105 55.2
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 2.8e-28 128.6 105 56.2
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 2.8e-28 128.6 93 59.1
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 6.3e-28 127.5 98 59.2
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 6.3e-28 127.5 102 55.9
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 8.3e-28 127.1 106 54.7
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 8.3e-28 127.1 105 57.1
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 8.3e-28 127.1 100 57.0
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.1e-27 126.7 98 58.2
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 1.1e-27 126.7 98 58.2
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 1.4e-27 126.3 94 60.6
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 1.8e-27 125.9 102 58.8
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 2.4e-27 125.6 94 60.6
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 2.4e-27 125.6 93 62.4
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 3.1e-27 125.2 104 55.8
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 3.1e-27 125.2 94 60.6
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 4.1e-27 124.8 106 50.9
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 4.1e-27 124.8 94 59.6
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 4.1e-27 124.8 107 53.3
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 5.4e-27 124.4 98 57.1
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 9.1e-27 123.6 97 56.7
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 9.1e-27 123.6 93 55.9
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 9.1e-27 123.6 107 53.3
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.6e-26 122.9 98 56.1
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.6e-26 122.9 99 56.6
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 2.0e-26 122.5 99 54.5
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 2.0e-26 122.5 105 53.3
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 2.0e-26 122.5 125 48.0
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 4.5e-26 121.3 98 56.1
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 5.9e-26 120.9 107 54.2
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 5.9e-26 120.9 94 59.6
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 2.3e-25 119.0 105 54.3
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 2.3e-25 119.0 105 51.4
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 3.8e-25 118.2 105 53.3
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 8.6e-25 117.1 107 52.3
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 1.1e-24 116.7 107 51.4
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 1.9e-24 115.9 97 53.6
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 2.5e-24 115.5 92 58.7
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 3.3e-24 115.2 100 49.0
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 3.3e-24 115.2 107 50.5
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 5.5e-24 114.4 98 53.1
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 2.8e-23 112.1 92 57.6
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 4.7e-23 111.3 102 52.0
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 4.7e-23 111.3 90 56.7
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 4.7e-23 111.3 99 52.5
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 6.1e-23 110.9 91 54.9
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 1.8e-22 109.4 104 51.0
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 2.3e-22 109.0 174 37.4
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 3.0e-22 108.6 103 49.5
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 3.0e-22 108.6 99 51.5
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 8.9e-22 107.1 139 41.7
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 5.7e-21 104.4 112 46.4
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 5.7e-21 104.4 99 50.5
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 4.9e-20 101.3 89 52.8
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 3.1e-19 98.6 81 55.6
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 1.2e-18 96.7 77 57.1
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 2.7e-18 95.5 77 57.1
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 3.5e-18 95.1 69 62.3
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 1.7e-17 92.8 77 55.8
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 3.8e-17 91.7 103 45.6
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 3.8e-17 91.7 77 53.2
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 3.8e-17 91.7 97 42.3
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 5.0e-17 91.3 69 58.0
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 1.1e-16 90.1 103 44.7
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 1.1e-16 90.1 81 49.4
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.9e-16 89.4 70 55.7
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 1.9e-16 89.4 77 50.6
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 4.3e-16 88.2 66 60.6
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 9.5e-16 87.0 77 51.9
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 2.1e-15 85.9 73 54.8
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 2.1e-15 85.9 72 54.2
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 8.0e-15 84.0 78 47.4
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 6.8e-14 80.9 72 51.4
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 7.5e-13 77.4 71 53.5
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 2.2e-12 75.9 76 50.0
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 3.2e-11 72.0 46 60.9
MCO03G239 Micromonas commoda HOM05D006227 ORTHO05D007714 9.5e-08 60.5 90 33.3
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 5.2e-06 54.7 40 57.5


User provided reference genes

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