Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 3.4e-247 857.8 421 100.0
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 2.7e-244 848.2 421 99.0
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 2.3e-243 845.1 421 98.8
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 4.8e-241 837.4 421 97.4
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.5e-239 832.4 421 96.4
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 4.1e-224 781.2 422 91.2
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 4.4e-218 761.1 421 88.1
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 3.7e-217 758.1 421 87.6
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 4.5e-215 751.1 421 87.4
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 3.8e-214 748.0 408 89.5
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.1e-189 666.8 421 77.4
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 2.3e-174 615.9 421 70.8
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 8.6e-174 614.0 421 70.3
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 5.6e-173 611.3 421 70.1
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 4.7e-172 608.2 419 70.9
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 6.2e-172 607.8 427 69.6
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 8.1e-172 607.4 424 70.0
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.1e-171 607.1 421 69.6
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 3.4e-170 602.1 419 70.2
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 3.4e-170 602.1 335 86.0
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 7.5e-170 600.9 426 69.5
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 2.9e-169 599.0 423 70.2
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 4.9e-169 598.2 417 69.1
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.2e-167 593.6 422 67.3
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 3.5e-167 592.0 416 67.3
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 6.0e-167 591.3 418 67.9
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 7.8e-167 590.9 418 67.9
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.0e-166 590.5 422 67.3
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.0e-166 590.5 431 67.5
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 5.6e-165 584.7 423 66.4
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 9.5e-165 583.9 423 66.9
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 9.5e-165 583.9 421 67.2
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 2.8e-164 582.4 432 66.4
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 2.8e-164 582.4 419 69.2
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 3.6e-164 582.0 419 67.3
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 6.2e-164 581.3 408 68.4
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.4e-163 580.1 419 67.3
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 4.0e-163 578.6 422 66.4
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 8.9e-163 577.4 419 66.6
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.2e-162 577.0 412 66.5
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 4.4e-162 575.1 421 66.7
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 5.8e-162 574.7 424 66.5
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.3e-161 573.5 421 66.3
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.7e-161 573.2 425 64.7
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 3.8e-161 572.0 424 67.2
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 2.4e-160 569.3 385 71.7
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 3.2e-160 568.9 419 65.6
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 9.2e-160 567.4 421 64.1
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.6e-159 566.6 419 65.4
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 2.1e-159 566.2 420 64.8
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 3.5e-159 565.5 405 66.7
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.0e-158 563.9 427 64.6
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 1.0e-158 563.9 419 65.4
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.7e-158 563.1 424 64.4
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 5.1e-158 561.6 420 65.5
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 5.6e-157 558.1 422 65.2
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 1.6e-156 556.6 420 64.5
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 6.2e-156 554.7 440 63.4
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.4e-155 552.7 407 66.1
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.0e-154 549.7 419 64.4
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 2.6e-154 549.3 414 65.9
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 3.4e-154 548.9 298 86.6
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 3.4e-154 548.9 448 61.8
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 3.4e-154 548.9 445 61.8
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 4.4e-154 548.5 412 65.8
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 5.8e-154 548.1 414 65.9
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.7e-153 546.6 420 64.0
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 2.2e-153 546.2 421 63.7
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.8e-153 545.4 419 64.7
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 6.4e-153 544.7 419 64.0
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.4e-153 544.7 419 63.5
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 6.4e-153 544.7 415 63.1
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.9e-152 543.1 429 61.8
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 4.2e-152 542.0 427 62.5
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 9.3e-152 540.8 474 59.3
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 2.1e-151 539.7 434 62.9
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 3.5e-151 538.9 431 61.5
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 4.6e-151 538.5 421 63.9
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.0e-150 537.3 422 64.2
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.3e-150 537.0 392 67.3
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.3e-150 537.0 413 62.7
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.7e-150 536.6 420 62.9
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 3.0e-150 535.8 481 58.0
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 3.9e-150 535.4 424 61.3
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 6.6e-150 534.6 415 61.9
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.3e-149 532.3 393 67.2
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-148 530.4 460 59.3
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.6e-148 530.0 422 61.4
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 9.9e-146 520.8 418 61.0
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 4.6e-143 511.9 419 61.1
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 1.3e-140 503.8 390 64.6
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.8e-140 501.9 330 72.1
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 5.5e-136 488.4 432 59.5
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 1.6e-135 486.9 416 60.8
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 2.3e-134 483.0 415 60.0
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.5e-130 470.3 299 71.2
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.1e-128 464.2 317 71.9
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.1e-128 464.2 316 66.8
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.6e-127 460.3 423 54.1
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 3.5e-127 459.1 307 68.4
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 3.4e-122 442.6 335 62.4
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-121 440.7 328 64.6
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 4.2e-120 435.6 416 56.0
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 6.9e-115 418.3 423 48.9
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 3.4e-114 416.0 410 51.0
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.0e-113 414.5 422 50.9
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.0e-113 414.5 413 51.1
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 8.5e-113 411.4 423 48.7
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.5e-104 382.1 313 61.3
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 5.0e-97 359.0 278 65.1
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.9e-96 357.1 295 60.0
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 7.2e-96 355.1 317 53.0
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 8.3e-84 315.1 278 60.8
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.4e-77 292.7 184 67.9
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 4.7e-71 272.7 449 37.6
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 1.1e-67 261.5 374 42.5
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 5.4e-67 259.2 220 52.3
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.9e-59 234.2 419 36.5
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.4e-54 218.0 555 30.3
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 1.3e-49 201.4 250 47.2
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 6.4e-44 182.6 192 47.9
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 3.6e-39 166.8 123 74.0
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 3.6e-39 166.8 138 60.1
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 4.0e-38 163.3 127 62.2
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 4.3e-32 143.3 116 59.5
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 6.2e-31 139.4 115 60.0
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 3.9e-25 120.2 256 33.6
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 7.6e-21 105.9 142 45.8
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 9.3e-19 99.0 105 46.7
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.2e-10 72.0 57 64.9
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 1.5e-08 65.1 118 40.7
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.3e-08 63.5 64 53.1
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 3.7e-07 60.5 38 68.4
BcaC09g52239 Brassica carinata HOM05D000538 ORTHO05D000614 9.0e-06 55.8 37 78.4


User provided reference genes

Program Settings