Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1470.3 758 100.0
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1432.9 758 97.1
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1432.9 758 97.1
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1429.5 758 97.0
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1429.5 758 97.0
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1379.4 759 93.0
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1346.6 761 91.5
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1346.6 761 91.5
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 0.0e+00 1340.9 760 91.1
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1335.1 759 90.8
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1335.1 759 90.8
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1312.4 704 96.2
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1276.2 759 87.1
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1267.3 759 86.6
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 0.0e+00 1256.5 759 85.6
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 0.0e+00 1209.5 784 80.5
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1204.5 761 81.5
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1202.2 759 81.9
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 0.0e+00 1128.6 755 77.2
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1100.9 761 76.6
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 1.7e-300 1035.8 751 71.5
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.0e-297 1026.5 760 72.4
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 1.7e-297 1025.8 748 70.5
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 1.1e-296 1023.1 755 69.1
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.4e-296 1022.7 748 69.8
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 1.6e-295 1019.2 756 70.2
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 2.7e-295 1018.5 759 72.5
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 1.0e-294 1016.5 756 70.0
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 1.5e-293 1012.7 761 68.3
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 4.4e-293 1011.1 773 68.3
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 5.7e-293 1010.7 756 68.1
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.3e-292 1009.6 748 68.7
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 1.4e-291 1006.1 753 68.8
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.4e-291 1006.1 761 71.9
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.4e-291 1006.1 761 71.9
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.4e-291 1006.1 748 69.1
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 3.1e-291 1005.0 753 68.7
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 7.0e-291 1003.8 747 68.7
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 2.0e-290 1002.3 750 68.9
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 4.5e-290 1001.1 756 68.3
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.0e-289 1000.0 747 68.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 1.3e-289 999.6 754 68.8
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.7e-289 999.2 747 68.1
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 2.9e-289 998.4 761 67.3
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 5.0e-289 997.7 748 68.4
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 1.9e-288 995.7 760 68.6
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.9e-288 995.7 747 68.1
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 3.2e-288 995.0 756 67.2
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 5.5e-288 994.2 755 67.9
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 9.4e-288 993.4 761 67.0
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 2.1e-287 992.3 750 67.5
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 2.6e-285 985.3 726 72.5
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 3.3e-285 984.9 746 67.8
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 7.4e-285 983.8 759 68.8
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.7e-285 983.4 742 68.5
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 2.8e-284 981.9 767 67.1
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 3.7e-284 981.5 760 66.4
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 4.8e-284 981.1 763 67.4
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.8e-283 979.2 767 67.0
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 5.3e-283 977.6 754 66.8
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.6e-282 976.1 753 66.9
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.1e-280 969.9 755 67.2
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.1e-280 969.9 746 66.6
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 1.9e-280 969.1 749 67.3
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 9.4e-280 966.8 747 67.2
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 3.6e-279 964.9 770 65.6
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.7e-279 964.5 751 67.1
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 6.1e-279 964.1 756 66.7
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 1.8e-278 962.6 746 65.7
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.8e-278 962.6 798 64.3
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 2.3e-278 962.2 756 65.6
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 4.0e-278 961.4 768 64.7
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 4.4e-277 958.0 738 67.3
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 1.7e-276 956.1 764 64.5
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.2e-276 955.7 759 65.1
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 6.3e-276 954.1 757 65.9
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 2.4e-275 952.2 766 64.5
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 7.0e-275 950.7 760 65.8
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 2.9e-273 945.3 759 64.3
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 6.5e-273 944.1 755 64.9
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 6.1e-271 937.6 764 63.2
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 5.2e-270 934.5 759 63.5
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 8.8e-270 933.7 745 64.3
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.7e-268 928.3 710 67.3
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 4.1e-267 924.9 752 63.6
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 7.7e-266 920.6 745 63.6
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 2.3e-265 919.1 763 64.5
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 3.8e-265 918.3 763 64.4
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 6.6e-265 917.5 745 63.4
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 8.6e-265 917.1 760 64.1
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 3.3e-264 915.2 756 64.3
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 5.5e-264 914.4 760 63.9
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 2.8e-263 912.1 764 63.2
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 6.8e-262 907.5 749 62.9
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.2e-260 902.5 760 63.2
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 2.8e-260 902.1 749 62.3
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 9.2e-259 897.1 730 68.4
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 5.6e-256 887.9 759 62.6
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 4.4e-253 878.2 746 63.1
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.2e-252 875.9 535 82.8
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.9e-251 872.8 746 61.7
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.5e-248 860.5 767 60.4
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.5e-245 853.2 678 64.9
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 2.2e-244 849.4 737 61.1
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 3.1e-238 828.9 625 68.2
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 2.9e-236 822.4 816 55.3
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 6.4e-236 821.2 746 59.1
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.1e-235 820.5 765 57.1
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 5.4e-235 818.1 744 57.9
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.6e-231 806.6 764 56.5
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.2e-229 800.4 656 62.5
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 4.5e-213 745.3 640 62.3
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 4.2e-211 738.8 746 52.9
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 2.1e-202 709.9 528 68.0
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.1e-198 696.0 533 65.5
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.1e-198 695.7 756 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 4.5e-197 692.2 745 49.9
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 5.5e-195 685.3 526 66.0
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 4.8e-191 672.2 764 49.0
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.8e-188 662.5 748 49.2
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 5.7e-184 648.7 546 64.5
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.8e-175 619.8 739 46.8
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 2.0e-157 560.5 760 44.6
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.2e-149 534.6 388 72.7
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.0e-149 533.9 607 48.1
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 5.4e-126 456.1 392 62.0
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 2.4e-110 404.1 345 59.4
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 2.1e-109 401.0 726 34.7
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 7.9e-101 372.5 474 47.9
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 4.2e-86 323.6 746 30.8
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.9e-76 290.4 225 62.2
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 9.7e-75 285.8 836 28.1
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 9.7e-67 259.2 227 64.3
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.6e-56 224.6 508 35.0
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.4e-46 189.5 227 50.7
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.5e-38 164.9 124 64.5
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 3.0e-36 157.9 193 49.2
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 4.1e-33 147.5 169 50.9
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 2.7e-32 144.8 197 45.7
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 8.6e-31 139.8 106 68.9
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 5.7e-27 127.1 102 59.8
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.7e-26 125.6 113 57.5
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.9e-26 124.8 138 50.0
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 3.7e-26 124.4 229 37.1
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 7.0e-25 120.2 80 73.8
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.0e-23 116.3 229 39.3
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.1e-17 96.3 80 63.8
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.2e-17 94.7 98 48.0
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 4.1e-17 94.4 92 54.3
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 4.3e-14 84.3 95 45.3
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 3.1e-12 78.2 73 57.5
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 3.1e-12 78.2 73 57.5
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 4.0e-12 77.8 79 50.6
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 2.0e-11 75.5 73 56.2
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 3.4e-11 74.7 56 66.1
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 5.8e-11 73.9 67 55.2
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 7.5e-11 73.6 74 55.4
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 1.7e-10 72.4 88 44.3
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 2.9e-10 71.6 122 36.1
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.7e-10 71.2 66 54.5
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 8.3e-10 70.1 63 58.7
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 1.9e-06 58.9 57 57.9
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 7.3e-06 57.0 63 52.4
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 7.3e-06 57.0 55 49.1


User provided reference genes

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