Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 2663.3 1385 100.0
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 0.0e+00 2656.3 1392 99.5
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 0.0e+00 2523.4 1402 94.7
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 2522.7 1395 94.9
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 2194.9 1415 84.8
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 0.0e+00 2002.6 1456 77.5
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1902.1 1395 76.1
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 0.0e+00 1874.4 1443 73.2
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 0.0e+00 1856.3 1496 71.1
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 0.0e+00 1828.1 1444 72.0
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 0.0e+00 1813.1 1479 70.7
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 0.0e+00 1807.0 1445 71.8
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 0.0e+00 1756.9 1450 70.5
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1749.6 1442 70.6
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1743.0 1438 70.5
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 0.0e+00 1732.6 1468 68.8
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 0.0e+00 1720.3 1451 69.3
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1571.6 1417 66.4
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 0.0e+00 1473.0 1433 62.0
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 0.0e+00 1142.1 1510 50.9
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 0.0e+00 1095.5 1495 49.8
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 2.9e-194 683.7 1590 37.2
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.8e-191 674.5 1611 36.4
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 2.2e-189 667.5 1600 36.4
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.1e-188 665.2 1603 36.4
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 1.9e-185 654.4 1626 35.9
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 8.8e-183 645.6 1463 37.5
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 2.4e-180 637.5 1657 36.4
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 1.2e-176 625.2 1626 35.2
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 1.0e-170 605.5 1620 35.5
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 3.8e-170 603.6 1593 35.0
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 6.5e-170 602.8 1589 35.2
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 1.4e-167 595.1 1628 35.0
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.0e-166 591.3 1572 36.2
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 6.3e-165 586.3 1582 35.1
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 2.4e-164 584.3 1596 34.4
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 2.9e-162 577.4 1611 35.0
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 8.5e-162 575.9 1647 34.1
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.6e-160 571.6 1670 34.3
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 1.6e-160 571.6 1694 33.3
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 4.7e-160 570.1 1601 34.5
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.0e-159 567.4 1587 35.0
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 4.4e-158 563.5 1601 34.4
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.3e-157 559.3 1588 34.3
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 2.4e-156 557.8 1598 34.4
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 2.4e-156 557.8 1541 34.7
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 5.4e-156 556.6 1620 34.6
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 2.7e-155 554.3 1676 33.3
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 4.5e-155 553.5 1621 34.4
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 5.9e-155 553.1 1578 35.0
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 6.6e-154 549.7 1620 33.5
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 6.6e-154 549.7 1628 34.4
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.2e-152 545.4 1569 33.5
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 2.8e-152 544.3 1689 32.9
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.6e-147 528.5 1576 33.4
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 5.9e-147 526.6 1627 33.4
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 5.9e-147 526.6 1592 33.7
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.3e-146 525.4 1589 33.7
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.3e-145 520.8 1584 33.0
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.3e-145 519.6 1606 33.1
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.2e-144 516.5 1606 33.0
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.3e-143 514.6 1660 32.2
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 6.8e-143 513.1 1581 33.9
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.4e-142 510.8 1596 33.4
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 9.8e-142 509.2 1561 33.9
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 9.8e-142 509.2 1554 34.0
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 6.4e-141 506.5 1593 32.8
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 4.6e-139 500.4 1570 33.5
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 1.7e-138 498.4 1597 32.7
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.3e-138 498.0 1653 32.6
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.6e-136 490.7 1590 32.6
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 2.9e-133 481.1 1549 33.3
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 6.4e-133 479.9 1588 32.9
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.6e-131 475.3 1606 32.4
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 3.0e-130 471.1 1575 32.6
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 5.1e-130 470.3 1553 33.0
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 6.6e-130 469.9 1610 32.0
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 2.1e-128 464.9 1620 31.5
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.8e-127 461.8 1617 31.2
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.6e-126 458.0 1644 31.3
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 5.8e-126 456.8 1581 32.8
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 5.8e-126 456.8 1543 32.0
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.9e-124 451.8 1283 33.6
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 6.0e-123 446.8 1591 31.4
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 6.6e-122 443.4 1511 31.8
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 4.0e-119 434.1 1593 32.0
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 4.0e-119 434.1 1622 31.3
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 9.9e-118 429.5 1622 31.3
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.3e-117 429.1 1545 32.1
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.6e-115 422.2 1660 31.5
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 7.8e-115 419.9 1621 30.0
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.3e-112 412.5 1478 30.4
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 8.1e-112 409.8 1582 31.3
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 1.2e-110 406.0 1667 29.6
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 8.4e-109 399.8 1623 30.1
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 3.2e-108 397.9 1617 29.1
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.0e-106 392.9 1512 30.8
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 2.3e-106 391.7 1423 31.5
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 4.8e-104 384.0 1344 31.8
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 8.1e-104 383.3 1479 30.0
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.2e-102 379.4 1725 29.2
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 2.2e-101 375.2 1555 29.9
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 2.9e-101 374.8 1569 30.3
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 6.4e-101 373.6 1644 29.6
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.1e-97 362.8 1587 29.9
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.1e-95 356.3 638 40.9
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.8e-95 355.5 1605 28.5
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 1.3e-93 349.4 1545 28.9
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 4.2e-92 344.4 1692 28.7
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 5.5e-92 344.0 1562 28.3
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 6.7e-90 337.0 1557 29.4
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.5e-89 335.1 1509 28.8
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 4.1e-87 327.8 1684 28.1
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.9e-85 321.6 1186 31.5
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 4.6e-75 287.7 720 34.4
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 3.9e-74 284.6 1623 27.4
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.4e-73 281.2 345 53.3
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 4.4e-73 281.2 1540 29.0
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 7.4e-73 280.4 1346 28.9
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.2e-59 236.5 1336 27.4
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.6e-57 228.8 917 29.3
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 2.8e-56 225.3 193 65.3
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 4.8e-56 224.6 210 65.7
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 4.8e-56 224.6 210 65.7
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 7.0e-55 220.7 1416 25.9
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 5.9e-54 217.6 1424 28.0
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 6.5e-53 214.2 198 61.6
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.6e-51 209.5 204 59.8
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.6e-51 209.5 1441 26.6
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.6e-51 209.5 1574 26.1
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 3.6e-51 208.4 1171 28.3
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 7.5e-49 200.7 1239 27.1
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.6e-46 193.0 1282 27.0
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.7e-45 189.5 658 31.0
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 6.5e-45 187.6 437 37.5
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.6e-43 183.0 1408 25.1
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 8.0e-43 180.6 207 55.6
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.2e-41 176.8 1478 25.0
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.7e-38 165.6 499 30.5
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 5.8e-33 147.9 298 42.3
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.1e-31 141.7 693 28.7
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.2e-27 130.2 1273 25.5
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.0e-25 122.9 326 36.5
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.9e-21 108.6 83 68.7
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.1e-20 107.1 491 31.0
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.1e-19 102.8 401 31.2
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.8e-18 99.8 506 29.6
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 6.8e-18 97.8 794 25.3
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 9.9e-17 94.0 232 37.5
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.9e-16 91.7 534 28.8
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 8.6e-13 80.9 185 36.2
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 2.5e-12 79.3 427 29.7
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 9.5e-12 77.4 1736 23.3
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 4.7e-11 75.1 480 31.5
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-10 73.6 197 33.0
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 1.5e-09 70.1 199 34.2
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 3.5e-06 58.9 116 36.2


User provided reference genes

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