Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p53520 Brassica napus HOM05D003905 ORTHO05D005329 0.0e+00 1476.5 776 100.0
BolC7t45844H Brassica oleracea HOM05D003905 ORTHO05D005329 0.0e+00 1349.0 779 92.3
BcaC06g32891 Brassica carinata HOM05D003905 ORTHO05D005329 0.0e+00 1276.9 780 89.5
A03p55230 Brassica napus HOM05D003905 ORTHO05D005329 0.0e+00 1190.3 811 82.0
BraA03t14582Z Brassica rapa HOM05D003905 ORTHO05D005329 0.0e+00 1190.3 811 82.0
A03p55210 Brassica napus HOM05D003905 ORTHO05D005329 0.0e+00 1185.2 804 82.1
BraA03t14580Z Brassica rapa HOM05D003905 ORTHO05D005329 0.0e+00 1185.2 804 82.1
C07p53430 Brassica napus HOM05D003905 ORTHO05D005329 7.9e-290 1000.3 787 71.9
BolC7t45837H Brassica oleracea HOM05D003905 ORTHO05D005329 3.1e-286 988.4 785 70.8
Thhalv10027094m.g Eutrema salsugineum HOM05D003905 ORTHO05D005329 1.9e-280 969.1 723 75.4
Sp7g22170 Schrenkiella parvula HOM05D003905 ORTHO05D005329 3.5e-274 948.3 823 66.6
AT4G24200 Arabidopsis thaliana HOM05D003905 ORTHO05D005329 4.6e-274 948.0 723 73.3
AL7G29080 Arabidopsis lyrata HOM05D003905 ORTHO05D005329 1.1e-272 943.3 723 73.2
Carub.0007s1689 Capsella rubella HOM05D003905 ORTHO05D005329 2.9e-268 928.7 803 66.4
CARHR231610 Cardamine hirsuta HOM05D003905 ORTHO05D005329 4.0e-233 812.0 735 66.0
THA.LOC104806874 Tarenaya hassleriana HOM05D003905 ORTHO05D005329 6.3e-122 442.6 828 42.0
THA.LOC104814731 Tarenaya hassleriana HOM05D003905 ORTHO05D005329 2.1e-88 331.3 445 47.4
Atru.chr13.267 Acer truncatum HOM05D003905 ORTHO05D005329 5.6e-78 296.6 557 40.0
Cfa013971 Carpinus fangiana HOM05D003905 ORTHO05D005329 1.3e-74 285.4 702 37.3
Ciclev10000122m.g Citrus clementina HOM05D003905 ORTHO05D005329 1.7e-74 285.0 776 33.8
Manes.18G012100 Manihot esculenta HOM05D003905 ORTHO05D005329 3.9e-71 273.9 661 38.0
Dinv39531 Davidia involucrata HOM05D003905 ORTHO05D005329 4.3e-70 270.4 570 38.9
TWI56G0857 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 7.3e-70 269.6 682 37.4
Sabra05G0186900 Salix brachista HOM05D003905 ORTHO05D005329 9.6e-70 269.2 811 35.0
CiPaw.08G067200 Carya illinoinensis HOM05D003905 ORTHO05D005329 1.6e-69 268.5 573 40.0
COL.COLO4_26128 Corchorus olitorius HOM05D003905 ORTHO05D005329 6.2e-69 266.5 808 32.9
Potri.005G241400 Populus trichocarpa HOM05D003905 ORTHO05D005329 1.8e-68 265.0 786 34.9
Thecc.08G046500 Theobroma cacao HOM05D003905 ORTHO05D005329 1.5e-67 261.9 781 32.9
FAN20G1912 Fragaria x ananassa HOM05D003905 ORTHO05D005329 7.6e-67 259.6 565 38.4
Duzib093G0852 Durio zibethinus HOM05D003905 ORTHO05D005329 1.7e-66 258.5 796 32.7
QL02p011991 Quercus lobata HOM05D003905 ORTHO05D005329 2.9e-66 257.7 565 38.6
Duzib116G0388 Durio zibethinus HOM05D003905 ORTHO05D005329 1.1e-65 255.8 741 34.7
FvH4_2g38250 Fragaria vesca HOM05D003905 ORTHO05D005329 1.9e-65 255.0 565 37.9
Duzib041G0770 Durio zibethinus HOM05D003905 ORTHO05D005329 4.6e-64 250.4 802 32.5
Manes.05G145700 Manihot esculenta HOM05D003905 ORTHO05D005329 4.6e-64 250.4 828 33.2
TAR381G0315 Trochodendron aralioides HOM05D003905 ORTHO05D005329 2.3e-63 248.1 581 37.3
TAR381G1218 Trochodendron aralioides HOM05D003905 ORTHO05D005329 2.3e-63 248.1 580 37.2
Potri.002G020000 Populus trichocarpa HOM05D003905 ORTHO05D005329 1.1e-62 245.7 792 34.0
TWI12G0098 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 4.3e-62 243.8 766 34.5
Prupe.1G363500 Prunus persica HOM05D003905 ORTHO05D005329 9.6e-62 242.7 779 33.1
RcHm_v2.0_Chr6g0303121 Rosa chinensis HOM05D003905 ORTHO05D005329 4.8e-61 240.4 697 33.3
TWI36G1438 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 6.9e-60 236.5 810 33.0
Sabra02G0016300 Salix brachista HOM05D003905 ORTHO05D005329 2.0e-59 235.0 795 33.2
CiPaw.07G148100 Carya illinoinensis HOM05D003905 ORTHO05D005329 2.6e-59 234.6 842 31.4
PGSC0003DMG400029336 Solanum tuberosum HOM05D003905 ORTHO05D005329 3.4e-59 234.2 562 35.4
Glyma.06G023600 Glycine max HOM05D003905 ORTHO05D005329 5.8e-59 233.4 560 37.9
CSS0039596 Camellia sinensis var. sinensis HOM05D003905 ORTHO05D005329 3.8e-58 230.7 697 34.0
Gohir.A06G002700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 8.4e-58 229.6 551 36.1
MD15G1010900 Malus domestica HOM05D003905 ORTHO05D005329 8.4e-58 229.6 757 31.4
CAN.G1925.3 Capsicum annuum HOM05D003905 ORTHO05D005329 2.4e-57 228.0 554 35.7
TAR376G0902 Trochodendron aralioides HOM05D003905 ORTHO05D005329 2.4e-57 228.0 591 37.9
Nitab4.5_0000337g0040 Nicotiana tabacum HOM05D003905 ORTHO05D005329 2.1e-56 224.9 809 30.7
Sopen12g031180 Solanum pennellii HOM05D003905 ORTHO05D005329 2.1e-56 224.9 562 34.7
Glyma.17G258900 Glycine max HOM05D003905 ORTHO05D005329 6.0e-56 223.4 570 36.0
Lj5g0002583 Lotus japonicus HOM05D003905 ORTHO05D005329 1.8e-55 221.9 589 36.5
Glyma.14G219900 Glycine max HOM05D003905 ORTHO05D005329 2.3e-55 221.5 558 36.9
TPR.G26376 Trifolium pratense HOM05D003905 ORTHO05D005329 3.0e-55 221.1 570 37.0
Glyma.04G023600 Glycine max HOM05D003905 ORTHO05D005329 5.1e-55 220.3 694 35.0
Lj4C798T8 Lonicera japonica HOM05D003905 ORTHO05D005329 6.7e-55 219.9 586 35.0
Cc10_g01500 Coffea canephora HOM05D003905 ORTHO05D005329 1.1e-54 219.2 575 35.8
Dinv31863 Davidia involucrata HOM05D003905 ORTHO05D005329 1.1e-54 219.2 616 35.4
TAR625G1519 Trochodendron aralioides HOM05D003905 ORTHO05D005329 1.1e-54 219.2 444 38.5
MD08G1010900 Malus domestica HOM05D003905 ORTHO05D005329 2.5e-54 218.0 700 32.6
Gohir.D05G188500 Gossypium hirsutum HOM05D003905 ORTHO05D005329 5.6e-54 216.9 810 31.2
CANSAT25G2239 Cannabis sativa HOM05D003905 ORTHO05D005329 9.6e-54 216.1 841 30.9
Peaxi162Scf00553g00071 Petunia axillaris HOM05D003905 ORTHO05D005329 9.6e-54 216.1 551 35.9
Gohir.D06G005700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 1.3e-53 215.7 862 30.7
Gorai.009G193800 Gossypium raimondii HOM05D003905 ORTHO05D005329 1.3e-53 215.7 810 31.1
VMungo1309G0723 Vigna mungo HOM05D003905 ORTHO05D005329 2.1e-53 214.9 697 34.9
Actinidia16997 Actinidia chinensis HOM05D003905 ORTHO05D005329 2.8e-53 214.5 708 33.1
Phvul.009G009400 Phaseolus vulgaris HOM05D003905 ORTHO05D005329 3.7e-53 214.2 656 35.4
VMungo0647G0001 Vigna mungo HOM05D003905 ORTHO05D005329 8.2e-53 213.0 571 37.1
Hma1.2p1_0023F.1_g015570 Hydrangea macrophylla HOM05D003905 ORTHO05D005329 1.1e-52 212.6 787 32.1
Lj5g0020561 Lotus japonicus HOM05D003905 ORTHO05D005329 1.8e-52 211.8 650 35.5
Solyc12g089320.3 Solanum lycopersicum HOM05D003905 ORTHO05D005329 3.1e-52 211.1 548 33.4
Sabra13G0112200 Salix brachista HOM05D003905 ORTHO05D005329 4.0e-52 210.7 371 42.6
Eucgr.H00969 Eucalyptus grandis HOM05D003905 ORTHO05D005329 5.3e-52 210.3 577 36.0
Psat6g002200 Pisum sativum HOM05D003905 ORTHO05D005329 3.4e-51 207.6 567 36.7
Gorai.010G002900 Gossypium raimondii HOM05D003905 ORTHO05D005329 1.7e-50 205.3 857 30.5
Lalb_Chr23g0266101 Lupinus albus HOM05D003905 ORTHO05D005329 1.1e-49 202.6 604 34.8
Phvul.001G005400 Phaseolus vulgaris HOM05D003905 ORTHO05D005329 7.1e-49 199.9 763 32.9
DCAR_016728 Daucus carota HOM05D003905 ORTHO05D005329 6.0e-48 196.8 563 33.4
CsaV3_3G045950 Cucumis sativus L. HOM05D003905 ORTHO05D005329 1.8e-47 195.3 601 33.9
Oeu014169.1 Olea europaea HOM05D003905 ORTHO05D005329 1.8e-47 195.3 711 31.4
DCAR_013879 Daucus carota HOM05D003905 ORTHO05D005329 3.0e-47 194.5 565 33.1
Sed0006884 Sechium edule HOM05D003905 ORTHO05D005329 8.7e-47 193.0 757 30.8
Nitab4.5_0005970g0010 Nicotiana tabacum HOM05D003905 ORTHO05D005329 1.5e-46 192.2 817 30.2
Ca_13435_v3 Cicer arietinum L. HOM05D003905 ORTHO05D005329 2.5e-46 191.4 792 31.7
Lalb_Chr11g0061811 Lupinus albus HOM05D003905 ORTHO05D005329 2.5e-46 191.4 610 35.4
ClCG05G018200 Citrullus lanatus HOM05D003905 ORTHO05D005329 1.6e-45 188.7 752 30.9
Medtr1g025500 Medicago truncatula HOM05D003905 ORTHO05D005329 1.6e-45 188.7 853 31.2
PSO541G2778 Papaver somniferum HOM05D003905 ORTHO05D005329 8.2e-45 186.4 641 33.4
MSTRG.24238 Avicennia marina HOM05D003905 ORTHO05D005329 3.1e-44 184.5 564 34.4
Migut.N03170 Erythranthe guttata HOM05D003905 ORTHO05D005329 6.9e-44 183.3 599 33.1
Lalb_Chr08g0246181 Lupinus albus HOM05D003905 ORTHO05D005329 6.9e-44 183.3 846 29.8
Nitab4.5_0003251g0050 Nicotiana tabacum HOM05D003905 ORTHO05D005329 6.9e-44 183.3 798 30.5
Sc15g0004870 Simmondsia chinensis HOM05D003905 ORTHO05D005329 1.5e-43 182.2 769 30.3
MELO3C003744.2 Cucumis melo HOM05D003905 ORTHO05D005329 4.5e-43 180.6 759 30.7
Oeu046285.1 Olea europaea HOM05D003905 ORTHO05D005329 5.9e-43 180.3 551 34.3
PSO675G3234 Papaver somniferum HOM05D003905 ORTHO05D005329 5.9e-43 180.3 796 30.4
Lj4C22T7 Lonicera japonica HOM05D003905 ORTHO05D005329 5.5e-41 173.7 551 32.7
TAR628G1379 Trochodendron aralioides HOM05D003905 ORTHO05D005329 1.6e-40 172.2 284 42.6
MSTRG.22343 Avicennia marina HOM05D003905 ORTHO05D005329 5.7e-38 163.7 562 31.3
MBI05_g23390_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 9.7e-38 162.9 665 30.1
MSTRG.25260 Avicennia marina HOM05D003905 ORTHO05D005329 2.4e-36 158.3 786 27.4
Gohir.A05G185700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 4.5e-35 154.1 682 29.5
Sed0012955 Sechium edule HOM05D003905 ORTHO05D005329 5.9e-35 153.7 547 31.1
EL10Ac1g02168 Beta vulgaris HOM05D003905 ORTHO05D005329 1.3e-34 152.5 766 28.6
Nn5g30748 Nelumbo nucifera HOM05D003905 ORTHO05D005329 2.9e-34 151.4 526 32.5
DCAR_013878 Daucus carota HOM05D003905 ORTHO05D005329 3.2e-33 147.9 560 31.8
Oeu061973.1 Olea europaea HOM05D003905 ORTHO05D005329 5.5e-33 147.1 789 29.0
unitig_22.g6796 Utricularia gibba HOM05D003905 ORTHO05D005329 9.4e-33 146.4 836 26.9
Nn6g32019 Nelumbo nucifera HOM05D003905 ORTHO05D005329 1.2e-32 146.0 456 32.2
Oeu054487.1 Olea europaea HOM05D003905 ORTHO05D005329 7.9e-32 143.3 647 31.4
AUR62040550 Chenopodium quinoa HOM05D003905 ORTHO05D005329 5.1e-31 140.6 732 29.8
SalBow7G0836 Salvia bowleyana HOM05D003905 ORTHO05D005329 1.5e-30 139.0 832 27.4
unitig_8.g3383 Utricularia gibba HOM05D003905 ORTHO05D005329 2.6e-30 138.3 672 29.0
GSVIVG01024041001 Vitis vinifera HOM05D003905 ORTHO05D005329 4.4e-30 137.5 539 31.5
AUR62035030 Chenopodium quinoa HOM05D003905 ORTHO05D005329 7.4e-30 136.7 800 29.2
RhsimUnG0065300 Rhododendron simsii HOM05D003905 ORTHO05D005329 2.2e-29 135.2 480 30.8
Oeu001044.1 Olea europaea HOM05D003905 ORTHO05D005329 8.2e-29 133.3 547 30.7
PGR083G2535 Punica granatum HOM05D003905 ORTHO05D005329 2.4e-28 131.7 816 28.3
ATR1134G065 Amborella trichopoda HOM05D003905 ORTHO05D005329 1.6e-24 119.0 589 29.2
MBI09_g14157_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 2.1e-24 118.6 577 28.8
Rhsim06G0019800 Rhododendron simsii HOM05D003905 ORTHO05D005329 3.9e-23 114.4 830 26.9
Cpa.g.sc26.312 Carica papaya HOM05D003905 ORTHO05D005329 5.2e-23 114.0 563 30.4
ECA238G1952 Erigeron canadensis HOM05D003905 ORTHO05D005329 1.1e-22 112.8 558 28.1
Ah.11g039850 Amaranthus hybridus HOM05D003905 ORTHO05D005329 1.3e-21 109.4 826 27.5
Actinidia15434 Actinidia chinensis HOM05D003905 ORTHO05D005329 4.8e-21 107.5 253 36.0
PSO700G0319 Papaver somniferum HOM05D003905 ORTHO05D005329 4.1e-20 104.4 622 28.1
HanXRQChr14g0431231 Helianthus annuus HOM05D003905 ORTHO05D005329 4.5e-19 100.9 642 27.6
PSO170G1273 Papaver somniferum HOM05D003905 ORTHO05D005329 3.8e-18 97.8 626 28.0
TAR624G0280 Trochodendron aralioides HOM05D003905 ORTHO05D011420 1.1e-17 96.3 465 26.5
Migut.C00854 Erythranthe guttata HOM05D003905 ORTHO05D005329 1.5e-17 95.9 816 26.3
ECA232G5024 Erigeron canadensis HOM05D003905 ORTHO05D005329 2.5e-17 95.1 645 27.8
ATR0579G136 Amborella trichopoda HOM05D003905 ORTHO05D005329 5.5e-17 94.0 657 27.2
TAR624G1117 Trochodendron aralioides HOM05D003905 ORTHO05D011420 5.5e-17 94.0 439 26.9
HanXRQChr06g0184651 Helianthus annuus HOM05D003905 ORTHO05D005329 1.4e-15 89.4 389 27.8
QL12p004280 Quercus lobata HOM05D003905 ORTHO05D005329 1.4e-15 89.4 142 40.8
TAR381G0253 Trochodendron aralioides HOM05D003905 ORTHO05D011420 1.8e-15 89.0 653 27.1
Lsat_1_v5_gn_0_1320 Lactuca sativa HOM05D003905 ORTHO05D005329 4.1e-12 77.8 651 26.0
CDE02G0563 Ceratophyllum demersum HOM05D003905 ORTHO05D005329 1.7e-10 72.4 582 24.9
Haze_22650 Corylus avellana HOM05D003905 ORTHO05D005329 1.2e-08 66.2 348 30.2
SGA_v2.0_scaffold390G50586 Striga asiatica HOM05D003905 ORTHO05D005329 2.1e-08 65.5 644 23.3
TAR628G0881 Trochodendron aralioides HOM05D003905 ORTHO05D005329 1.0e-07 63.2 269 31.2
CDE04G0614 Ceratophyllum demersum HOM05D003905 ORTHO05D005329 1.4e-07 62.8 748 23.5
Haze_21293 Corylus avellana HOM05D003905 ORTHO05D011420 1.8e-07 62.4 526 27.9
FAN08G2565 Fragaria x ananassa HOM05D003905 ORTHO05D011420 8.8e-07 60.1 576 26.6
GSVIVG01009936001 Vitis vinifera HOM05D003905 ORTHO05D005329 8.8e-07 60.1 285 28.8
Cfa012940 Carpinus fangiana HOM05D003905 ORTHO05D011420 1.5e-06 59.3 528 27.1
Os06g0631300 Oryza sativa ssp. japonica HOM05D003905 ORTHO05D005329 3.4e-06 58.2 590 26.3


User provided reference genes

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