Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.7e-38 162.2 81 100.0
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 4.4e-34 147.5 77 93.5
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 2.7e-31 138.3 74 94.6
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 5.9e-31 137.1 74 93.2
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 2.1e-28 128.6 75 85.3
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 3.6e-28 127.9 75 84.0
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 3.0e-27 124.8 76 86.8
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 4.0e-27 124.4 75 82.7
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 6.8e-27 123.6 72 88.9
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 8.9e-27 123.2 75 81.3
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-26 122.9 76 82.9
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 2.9e-25 118.2 73 87.7
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 2.9e-25 118.2 73 87.7
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.2e-24 114.8 75 74.7
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.5e-23 111.3 75 74.7
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.3e-21 104.8 76 69.7
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 4.3e-21 104.4 72 72.2
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 2.1e-20 102.1 75 69.3
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.2e-18 96.3 79 64.6
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.9e-17 91.7 75 62.7
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 1.1e-16 89.7 73 61.6
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.9e-16 89.0 76 60.5
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.4e-16 88.6 73 61.6
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.4e-16 88.6 73 61.6
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 7.0e-16 87.0 73 60.3
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.6e-15 85.9 75 58.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.5e-15 84.7 71 60.6
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 7.8e-15 83.6 71 59.2
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.0e-14 83.2 69 63.8
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.0e-14 83.2 69 63.8
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 3.9e-14 81.3 72 56.9
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 6.6e-14 80.5 71 57.7
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 6.6e-14 80.5 75 58.7
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 8.6e-14 80.1 71 59.2
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.1e-13 79.7 68 57.4
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.1e-13 79.7 76 56.6
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.5e-13 79.3 75 58.7
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.5e-13 79.3 75 58.7
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 7.3e-13 77.0 84 50.0
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 9.5e-13 76.6 77 54.5
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.2e-12 76.3 76 56.6
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.6e-12 75.9 72 54.2
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.6e-12 75.9 73 56.2
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.1e-12 75.5 76 52.6
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 2.1e-12 75.5 72 55.6
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 2.1e-12 75.5 76 50.0
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 2.1e-12 75.5 69 55.1
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.8e-12 75.1 72 55.6
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.8e-12 75.1 71 57.7
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.7e-12 74.3 73 56.2
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 4.7e-12 74.3 73 50.7
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 4.7e-12 74.3 73 52.1
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.7e-12 74.3 71 57.7
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 6.2e-12 73.9 72 52.8
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.1e-11 73.2 71 52.1
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.1e-11 73.2 74 52.7
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.4e-11 72.8 76 52.6
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.4e-11 72.8 71 54.9
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.4e-11 72.8 80 50.0
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.8e-11 72.4 76 53.9
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.8e-11 72.4 71 53.5
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.8e-11 72.4 76 51.3
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.8e-11 72.4 75 50.7
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 1.8e-11 72.4 89 44.9
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.3e-11 72.0 84 48.8
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.1e-11 71.6 70 55.7
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 4.0e-11 71.2 74 51.4
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.0e-11 71.2 74 51.4
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 4.0e-11 71.2 74 51.4
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 4.0e-11 71.2 71 53.5
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 5.2e-11 70.9 72 54.2
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.2e-11 70.9 74 51.4
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 5.2e-11 70.9 77 45.5
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 5.2e-11 70.9 72 51.4
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.8e-11 70.5 76 51.3
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 6.8e-11 70.5 77 48.1
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 6.8e-11 70.5 73 54.8
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 8.9e-11 70.1 72 52.8
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.9e-11 70.1 69 55.1
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 8.9e-11 70.1 79 49.4
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.2e-10 69.7 76 51.3
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 1.2e-10 69.7 76 51.3
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.2e-10 69.7 90 46.7
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.2e-10 69.7 74 50.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.0e-10 68.9 76 51.3
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 2.6e-10 68.6 80 51.2
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 2.6e-10 68.6 77 49.4
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.6e-10 68.6 73 49.3
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 3.4e-10 68.2 70 52.9
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.4e-10 68.2 74 54.1
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.4e-10 68.2 80 52.5
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 3.4e-10 68.2 73 49.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 4.4e-10 67.8 77 50.6
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 5.8e-10 67.4 73 54.8
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 7.5e-10 67.0 72 50.0
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 7.5e-10 67.0 68 54.4
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.5e-10 67.0 81 49.4
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 9.9e-10 66.6 71 52.1
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.3e-09 66.2 76 50.0
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-09 66.2 70 50.0
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.3e-09 66.2 69 49.3
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.3e-09 66.2 76 50.0
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 1.7e-09 65.9 72 50.0
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.7e-09 65.9 72 51.4
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.7e-09 65.9 81 46.9
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.7e-09 65.9 81 49.4
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.2e-09 65.5 72 51.4
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.2e-09 65.5 71 50.7
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.9e-09 65.1 78 46.2
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 2.9e-09 65.1 78 46.2
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.7e-09 64.7 70 50.0
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.7e-09 64.7 73 53.4
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 4.9e-09 64.3 74 48.6
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 4.9e-09 64.3 73 49.3
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 6.4e-09 63.9 79 50.6
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.4e-09 63.9 82 47.6
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 8.3e-09 63.5 71 53.5
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 8.3e-09 63.5 81 48.1
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 8.3e-09 63.5 79 45.6
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 8.3e-09 63.5 74 48.6
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.1e-08 63.2 73 49.3
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.1e-08 63.2 73 45.2
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-08 63.2 73 45.2
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.1e-08 63.2 82 46.3
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.4e-08 62.8 71 50.7
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.4e-08 62.8 68 48.5
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.4e-08 62.8 78 46.2
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.9e-08 62.4 72 50.0
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.9e-08 62.4 73 52.1
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.9e-08 62.4 82 46.3
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 1.9e-08 62.4 77 51.9
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 1.9e-08 62.4 80 50.0
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.4e-08 62.0 82 43.9
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 2.4e-08 62.0 76 48.7
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 4.1e-08 61.2 71 50.7
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.1e-08 61.2 93 39.8
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.4e-08 60.8 73 43.8
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 7.1e-08 60.5 92 40.2
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 9.2e-08 60.1 80 46.2
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 9.2e-08 60.1 82 46.3
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 9.2e-08 60.1 77 41.6
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.6e-07 59.3 77 46.8
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 3.5e-07 58.2 78 43.6
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 4.6e-07 57.8 82 45.1
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 7.8e-07 57.0 71 45.1
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.0e-06 56.6 77 48.1
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-06 56.6 81 42.0
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-06 56.6 89 42.7
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-06 56.6 85 38.8
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.0e-06 56.6 84 40.5
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 1.7e-06 55.8 77 45.5
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.7e-06 55.8 75 45.3
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 3.0e-06 55.1 81 45.7
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 3.0e-06 55.1 61 47.5
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.9e-06 54.7 75 45.3
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 3.9e-06 54.7 75 42.7
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.1e-06 54.3 78 44.9
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 5.1e-06 54.3 81 40.7
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 6.6e-06 53.9 75 41.3


User provided reference genes

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