Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 2.7e-101 372.1 198 100.0
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 3.3e-99 365.2 198 98.0
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 3.3e-99 365.2 198 98.0
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 2.8e-98 362.1 198 96.5
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 2.0e-96 355.9 198 95.5
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.2e-88 330.1 196 89.3
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.1e-78 297.0 196 80.6
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 2.7e-77 292.4 196 79.6
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.7e-76 289.7 196 79.1
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 9.9e-72 273.9 201 77.1
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.7e-71 273.1 197 77.2
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 3.8e-71 271.9 196 75.5
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-70 270.0 197 75.6
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-70 270.0 196 74.5
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 1.4e-70 270.0 197 75.6
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 2.7e-69 265.8 197 74.6
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 6.0e-69 264.6 197 74.1
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.8e-68 263.1 197 75.1
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 3.9e-68 261.9 196 74.5
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.9e-67 259.6 202 72.3
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 6.2e-66 254.6 201 72.1
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 1.9e-59 233.0 176 72.2
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 7.4e-59 231.1 173 72.3
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 2.1e-58 229.6 174 71.8
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 6.5e-47 191.4 199 59.8
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 4.1e-41 172.2 192 58.3
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.5e-30 137.1 181 50.3
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.8e-20 103.6 175 42.9
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 2.3e-20 103.2 185 42.2
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.5e-19 100.5 182 45.1
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.6e-19 99.8 185 41.6
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 3.4e-19 99.4 173 43.9
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 5.7e-19 98.6 185 45.4
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 5.7e-19 98.6 185 44.3
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 9.8e-19 97.8 177 47.5
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 2.2e-18 96.7 174 44.8
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.2e-18 96.7 182 43.4
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 2.2e-18 96.7 174 42.0
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 2.8e-18 96.3 176 43.8
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 2.8e-18 96.3 185 42.2
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 2.8e-18 96.3 180 45.0
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.7e-18 95.9 183 41.5
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.8e-18 95.5 184 40.8
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 4.8e-18 95.5 185 42.7
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 6.3e-18 95.1 178 42.7
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 8.3e-18 94.7 185 43.8
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 8.3e-18 94.7 204 42.6
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.4e-17 94.0 182 45.1
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.4e-17 94.0 201 37.8
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.8e-17 93.6 182 42.3
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.8e-17 93.6 184 41.3
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.4e-17 93.2 178 42.7
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 3.1e-17 92.8 180 41.7
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.0e-17 91.7 179 41.9
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 7.0e-17 91.7 176 43.8
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 7.0e-17 91.7 200 38.0
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 9.1e-17 91.3 187 43.3
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 9.1e-17 91.3 179 42.5
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.2e-16 90.9 183 40.4
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 1.6e-16 90.5 189 42.9
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.6e-16 90.5 178 41.6
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.7e-16 89.7 177 41.2
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 2.7e-16 89.7 178 43.8
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.5e-16 89.4 176 43.2
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 4.5e-16 89.0 182 40.1
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.5e-16 89.0 169 44.4
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 5.9e-16 88.6 180 42.2
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 5.9e-16 88.6 186 41.4
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 7.7e-16 88.2 155 45.8
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.7e-16 88.2 179 41.9
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 7.7e-16 88.2 180 41.1
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.0e-15 87.8 169 43.2
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.3e-15 87.4 185 37.3
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.3e-15 87.4 170 40.0
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.3e-15 87.4 183 36.6
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 1.7e-15 87.0 175 40.6
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.7e-15 87.0 178 42.7
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.7e-15 87.0 176 42.0
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.8e-15 85.9 185 40.0
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 3.8e-15 85.9 181 40.9
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 5.0e-15 85.5 179 43.6
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 6.5e-15 85.1 186 41.4
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 6.5e-15 85.1 183 41.5
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 8.5e-15 84.7 169 42.6
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 8.5e-15 84.7 189 39.7
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 8.5e-15 84.7 177 39.5
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.1e-14 84.3 150 44.7
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.1e-14 84.3 178 40.4
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.1e-14 84.3 183 41.0
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.1e-14 84.3 179 39.7
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.1e-14 84.3 181 38.7
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.5e-14 84.0 174 36.8
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.5e-14 84.0 189 39.2
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.9e-14 83.6 182 35.7
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 4.2e-14 82.4 178 37.6
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.2e-14 82.4 189 39.2
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 7.2e-14 81.6 184 34.8
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 9.4e-14 81.3 178 39.3
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 2.7e-13 79.7 176 39.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 2.7e-13 79.7 171 38.0
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.6e-13 79.3 176 38.6
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 3.6e-13 79.3 187 38.0
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.6e-13 79.3 177 37.9
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.6e-13 79.3 183 36.1
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.7e-13 79.0 158 42.4
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 8.0e-13 78.2 176 36.9
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.0e-12 77.8 153 43.8
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.4e-12 77.4 152 38.8
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.8e-12 77.0 180 41.7
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 2.3e-12 76.6 187 34.8
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 3.0e-12 76.3 168 41.1
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 3.0e-12 76.3 172 39.0
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 4.0e-12 75.9 182 36.8
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 6.8e-12 75.1 173 37.6
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 8.8e-12 74.7 176 38.1
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 8.8e-12 74.7 173 34.7
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 8.8e-12 74.7 176 40.3
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 1.2e-11 74.3 180 41.7
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 2.0e-11 73.6 174 37.9
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.6e-11 73.2 173 36.4
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.6e-11 73.2 173 36.4
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 2.6e-11 73.2 174 33.3
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 3.4e-11 72.8 172 36.0
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 7.5e-11 71.6 181 40.3
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.3e-10 70.9 178 37.6
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.7e-10 70.5 178 38.2
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 4.9e-10 68.9 196 37.8
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.8e-09 67.0 158 40.5
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 2.4e-09 66.6 187 35.3
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.1e-09 65.9 173 37.0
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 7.0e-09 65.1 178 34.3
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 7.0e-09 65.1 175 38.3
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.2e-08 64.3 168 35.1
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.6e-08 63.9 165 40.0
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 1.6e-08 63.9 173 33.5
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 3.5e-08 62.8 156 41.7
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.0e-07 61.2 167 40.7
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.7e-07 60.5 190 32.6
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.7e-07 60.5 174 32.2
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 2.9e-07 59.7 175 34.3
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 3.8e-07 59.3 58 55.2
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 5.0e-07 58.9 152 36.2
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 9.5e-06 54.7 49 53.1


User provided reference genes

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