Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 2.7e-190 668.7 381 100.0
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 2.2e-184 649.0 382 98.2
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 3.5e-182 641.7 381 95.3
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 7.8e-158 560.8 397 86.1
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-152 543.1 379 85.2
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.5e-121 440.3 408 73.5
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 2.4e-106 389.8 413 64.2
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 1.9e-103 380.2 426 64.3
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.6e-102 377.1 442 63.1
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-98 363.6 410 65.1
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 2.9e-96 356.3 423 62.6
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 2.9e-96 356.3 423 62.6
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 6.5e-96 355.1 412 63.8
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.9e-95 353.6 425 61.9
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 9.1e-90 334.7 431 58.0
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 2.0e-89 333.6 423 58.9
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 3.5e-89 332.8 393 62.1
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 6.5e-88 328.6 427 57.8
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 1.5e-87 327.4 391 61.4
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 1.5e-87 327.4 423 59.1
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-87 327.4 391 61.4
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 7.2e-87 325.1 389 60.9
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 7.2e-87 325.1 389 60.9
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 1.2e-86 324.3 432 57.6
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.6e-54 217.6 415 44.6
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 5.8e-52 209.1 446 44.2
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.1e-49 200.7 438 40.2
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 6.8e-45 185.7 388 44.3
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 8.9e-45 185.3 401 45.1
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 9.3e-42 175.3 380 43.4
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 9.3e-42 175.3 380 43.4
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.6e-41 174.5 381 44.1
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 3.5e-41 173.3 379 45.6
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 5.1e-40 169.5 384 42.7
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-39 167.9 389 42.7
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 7.3e-39 165.6 369 42.3
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 3.1e-37 160.2 381 42.0
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 9.9e-36 155.2 390 39.2
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 3.8e-35 153.3 391 38.1
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 3.2e-34 150.2 386 42.7
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 9.3e-34 148.7 382 39.8
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 2.7e-33 147.1 366 40.4
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 3.5e-33 146.7 375 40.0
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 3.5e-33 146.7 375 40.0
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 8.7e-32 142.1 443 34.8
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 2.5e-31 140.6 400 36.2
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 4.3e-31 139.8 375 39.7
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.6e-30 137.9 382 41.1
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 4.5e-28 129.8 468 33.8
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-27 127.9 366 38.3
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 1.4e-26 124.8 464 32.3
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 1.9e-26 124.4 459 34.2
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 2.4e-26 124.0 386 36.3
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 2.4e-26 124.0 432 34.0
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 9.3e-26 122.1 407 34.4
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.0e-24 118.6 404 33.4
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 3.0e-24 117.1 439 33.7
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 5.1e-24 116.3 450 32.0
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 6.7e-24 115.9 400 37.5
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 1.9e-23 114.4 392 33.2
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 3.3e-23 113.6 453 33.8
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 5.6e-23 112.8 434 31.8
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 9.6e-23 112.1 415 31.3
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 1.6e-22 111.3 303 36.0
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.1e-22 110.9 392 32.4
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 2.8e-22 110.5 476 30.3
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.8e-22 110.5 441 33.3
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 6.2e-22 109.4 345 35.1
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 8.1e-22 109.0 456 31.8
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.1e-21 108.6 378 34.1
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.8e-21 107.8 453 33.6
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 9.0e-21 105.5 321 35.5
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 9.0e-21 105.5 474 29.7
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 2.6e-20 104.0 454 29.7
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 3.4e-20 103.6 187 43.3
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 5.8e-20 102.8 258 35.7
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.0e-19 102.1 406 31.5
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.0e-19 102.1 399 32.1
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 1.0e-19 102.1 444 32.7
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.3e-19 101.7 200 39.5
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.7e-19 101.3 451 33.0
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 1.7e-19 101.3 453 32.2
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.2e-19 100.9 420 31.0
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 2.9e-19 100.5 400 32.8
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 2.9e-19 100.5 444 32.4
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.4e-18 98.2 392 32.9
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.4e-18 98.2 406 31.8
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.9e-18 97.8 448 30.4
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 2.5e-18 97.4 289 34.6
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 4.2e-18 96.7 445 31.5
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 4.2e-18 96.7 240 40.4
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 5.5e-18 96.3 398 29.6
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 7.1e-18 95.9 403 28.8
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 9.3e-18 95.5 483 28.0
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.6e-17 94.7 483 28.4
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 2.1e-17 94.4 410 30.5
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.7e-17 94.0 477 30.8
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.7e-17 94.0 424 30.0
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.7e-17 94.0 473 29.8
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 4.6e-17 93.2 280 36.1
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 7.9e-17 92.4 456 29.8
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 2.3e-16 90.9 392 30.6
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 3.0e-16 90.5 414 27.5
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 6.7e-16 89.4 434 32.0
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 8.7e-16 89.0 279 36.2
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 8.7e-16 89.0 274 35.0
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.1e-15 88.6 351 31.3
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 1.9e-15 87.8 475 29.1
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 3.3e-15 87.0 512 28.7
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 7.4e-15 85.9 444 30.2
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 9.6e-15 85.5 434 33.2
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.3e-14 85.1 428 31.8
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.3e-14 85.1 468 30.3
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 1.3e-14 85.1 415 28.4
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 1.6e-14 84.7 490 28.6
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.6e-14 84.7 183 41.0
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 2.8e-14 84.0 407 28.5
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 3.7e-14 83.6 424 28.1
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 4.8e-14 83.2 467 28.1
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 4.8e-14 83.2 419 31.0
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 1.1e-13 82.0 430 29.5
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 1.4e-13 81.6 492 27.8
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 1.8e-13 81.3 64 68.8
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 5.3e-13 79.7 102 51.0
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 9.0e-13 79.0 95 52.6
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 2.0e-12 77.8 171 39.8
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.0e-12 77.8 419 30.3
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 4.5e-12 76.6 393 30.3
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 4.5e-12 76.6 464 26.7
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 7.6e-12 75.9 471 26.5
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 1.0e-11 75.5 406 29.8
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.7e-11 74.7 234 35.0
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 1.7e-11 74.7 392 26.8
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 2.2e-11 74.3 465 28.6
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 2.9e-11 73.9 71 54.9
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 3.8e-11 73.6 428 29.4
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.1e-10 72.0 280 32.1
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.1e-10 72.0 409 27.6
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 3.5e-09 67.0 440 29.5
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 1.3e-08 65.1 427 27.4
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 3.0e-08 63.9 402 25.9
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 8.7e-08 62.4 424 30.9
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 8.7e-08 62.4 124 37.1
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.5e-07 61.6 395 24.8
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 1.9e-07 61.2 53 60.4
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 1.9e-07 61.2 396 28.3
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.3e-07 60.5 423 27.4
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 3.3e-07 60.5 448 27.2
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 7.4e-07 59.3 61 55.7
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 7.4e-07 59.3 396 27.5
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 1.6e-06 58.2 377 27.1
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.6e-06 58.2 433 27.9
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 2.2e-06 57.8 396 26.3
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.2e-06 57.8 482 23.9
HPP92_013922 Vanilla planifolia HOM05D004305 ORTHO05D005159 3.7e-06 57.0 377 26.3


User provided reference genes

Program Settings