Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p50230 Brassica napus HOM05D000104 ORTHO05D020014 3.1e-31 137.9 72 100.0
BolC7t45526H Brassica oleracea HOM05D000104 ORTHO05D020014 3.1e-31 137.9 72 100.0
C05p33990 Brassica napus HOM05D000104 ORTHO05D020014 2.2e-29 131.7 72 95.8
BolC5t32134H Brassica oleracea HOM05D000104 ORTHO05D020014 2.2e-29 131.7 72 95.8
BcaNung03081 Brassica carinata HOM05D015057 ORTHO05D013430 1.1e-20 102.8 52 100.0
A05p05090 Brassica napus HOM05D000104 ORTHO05D008354 3.6e-11 71.2 44 81.8
BraA05t19483Z Brassica rapa HOM05D000104 ORTHO05D008354 3.6e-11 71.2 44 81.8
BolC3t18330H Brassica oleracea HOM05D000104 ORTHO05D020014 1.4e-10 69.3 46 76.1
C04p05940 Brassica napus HOM05D000104 ORTHO05D008354 3.0e-10 68.2 42 83.3
BolC4t22225H Brassica oleracea HOM05D000104 ORTHO05D008354 3.0e-10 68.2 42 83.3
Thhalv10001305m.g Eutrema salsugineum HOM05D000104 ORTHO05D008354 3.9e-10 67.8 42 81.0
Carub.0004s2758 Capsella rubella HOM05D000104 ORTHO05D008354 5.1e-10 67.4 41 80.5
QL04p034775 Quercus lobata HOM05D000104 ORTHO05D008354 6.7e-10 67.0 45 73.3
Aa31LG1G26570 Aethionema arabicum HOM05D000104 ORTHO05D008354 1.1e-09 66.2 44 75.0
Sp4g27050 Schrenkiella parvula HOM05D000104 ORTHO05D008354 1.1e-09 66.2 42 78.6
Hund17069 Selenicereus undatus HOM05D000104 ORTHO05D008354 1.1e-09 66.2 42 78.6
CARHR140240 Cardamine hirsuta HOM05D000104 ORTHO05D008354 1.5e-09 65.9 41 80.5
EL10Ac1g00807 Beta vulgaris HOM05D000104 ORTHO05D008354 2.0e-09 65.5 42 78.6
Sabra14G0041300 Salix brachista HOM05D000104 ORTHO05D008354 2.0e-09 65.5 42 76.2
Hma1.2p1_0341F.1_g130460 Hydrangea macrophylla HOM05D000104 ORTHO05D008354 2.5e-09 65.1 47 72.3
AT2G44980 Arabidopsis thaliana HOM05D000104 ORTHO05D008354 3.3e-09 64.7 40 80.0
CsaV3_6G008630 Cucumis sativus L. HOM05D000104 ORTHO05D008354 3.3e-09 64.7 43 72.1
Sc23g0004880 Simmondsia chinensis HOM05D000104 ORTHO05D008354 3.3e-09 64.7 41 82.9
THA.LOC104802482 Tarenaya hassleriana HOM05D000104 ORTHO05D008354 3.3e-09 64.7 40 80.0
Haze_02746 Corylus avellana HOM05D000104 ORTHO05D008354 4.3e-09 64.3 45 73.3
Sed0015521 Sechium edule HOM05D000104 ORTHO05D008354 4.3e-09 64.3 38 81.6
AL4G44080 Arabidopsis lyrata HOM05D000104 ORTHO05D008354 5.7e-09 63.9 41 78.0
CDE11G0513 Ceratophyllum demersum HOM05D000104 ORTHO05D008354 5.7e-09 63.9 43 74.4
COL.COLO4_12448 Corchorus olitorius HOM05D000104 ORTHO05D008354 9.7e-09 63.2 40 77.5
Glyma.01G073400 Glycine max HOM05D000104 ORTHO05D008354 9.7e-09 63.2 41 75.6
Manes.04G038200 Manihot esculenta HOM05D000104 ORTHO05D008354 1.3e-08 62.8 42 73.8
Phvul.008G141500 Phaseolus vulgaris HOM05D000104 ORTHO05D008354 1.3e-08 62.8 41 75.6
Aqoxy5G04143 Aquilegia oxysepala HOM05D000104 ORTHO05D008354 1.7e-08 62.4 44 70.5
CiPaw.13G029900 Carya illinoinensis HOM05D000104 ORTHO05D008354 1.7e-08 62.4 45 68.9
Migut.B01563 Erythranthe guttata HOM05D000104 ORTHO05D008354 1.7e-08 62.4 38 73.7
MBI04_g09528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D008354 1.7e-08 62.4 43 74.4
VMungo1383G2128 Vigna mungo HOM05D000104 ORTHO05D008354 1.7e-08 62.4 41 75.6
CSS0013679 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D008354 2.2e-08 62.0 38 76.3
PGR004G1640 Punica granatum HOM05D000104 ORTHO05D008354 2.2e-08 62.0 45 68.9
ClCG06G002490 Citrullus lanatus HOM05D000104 ORTHO05D008354 2.8e-08 61.6 41 73.2
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.8e-08 61.6 40 77.5
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.8e-08 61.6 40 77.5
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 2.8e-08 61.6 40 77.5
HanXRQChr06g0168811 Helianthus annuus HOM05D000104 ORTHO05D008354 2.8e-08 61.6 40 77.5
Lsat_1_v5_gn_7_11220 Lactuca sativa HOM05D000104 ORTHO05D008354 2.8e-08 61.6 40 77.5
TAR503G0004 Trochodendron aralioides HOM05D000104 ORTHO05D008354 2.8e-08 61.6 40 77.5
Zm00001eb404510 Zea mays HOM05D000104 ORTHO05D008354 2.8e-08 61.6 40 77.5
Atru.chr5.195 Acer truncatum HOM05D000104 ORTHO05D008354 3.7e-08 61.2 42 73.8
Duzib133G0313 Durio zibethinus HOM05D000104 ORTHO05D008354 3.7e-08 61.2 40 75.0
Potri.014G056700 Populus trichocarpa HOM05D000104 ORTHO05D008354 3.7e-08 61.2 41 73.2
Rhsim07G0033300 Rhododendron simsii HOM05D001240 ORTHO05D008354 3.7e-08 61.2 40 75.0
Thecc.01G387600 Theobroma cacao HOM05D000104 ORTHO05D008354 3.7e-08 61.2 40 75.0
TPR.G39134 Trifolium pratense HOM05D000104 ORTHO05D008354 3.7e-08 61.2 42 69.0
vmacro13471 Vaccinium macrocarpon HOM05D000104 ORTHO05D008354 3.7e-08 61.2 40 75.0
Ca_07352_v3 Cicer arietinum L. HOM05D000104 ORTHO05D008354 4.8e-08 60.8 43 65.1
Dinv44094 Davidia involucrata HOM05D000104 ORTHO05D008354 4.8e-08 60.8 42 71.4
ECA236G2937 Erigeron canadensis HOM05D000104 ORTHO05D008354 4.8e-08 60.8 40 75.0
Medtr7g039320 Medicago truncatula HOM05D000104 ORTHO05D008354 4.8e-08 60.8 41 73.2
Oeu009614.2 Olea europaea HOM05D000104 ORTHO05D008354 4.8e-08 60.8 40 77.5
Psat3g158520 Pisum sativum HOM05D000104 ORTHO05D008354 4.8e-08 60.8 43 67.4
FvH4_7g09450 Fragaria vesca HOM05D000104 ORTHO05D008354 6.3e-08 60.5 40 77.5
FAN06G0717 Fragaria x ananassa HOM05D000104 ORTHO05D008354 6.3e-08 60.5 40 77.5
FAN06G1402 Fragaria x ananassa HOM05D000104 ORTHO05D008354 6.3e-08 60.5 40 77.5
FAN10G0005 Fragaria x ananassa HOM05D000104 ORTHO05D008354 6.3e-08 60.5 40 77.5
FAN10G3495 Fragaria x ananassa HOM05D000104 ORTHO05D008354 6.3e-08 60.5 40 77.5
Lj7C540T8 Lonicera japonica HOM05D000104 ORTHO05D008354 6.3e-08 60.5 45 66.7
Medtr7g045505 Medicago truncatula HOM05D000104 ORTHO05D008354 6.3e-08 60.5 41 70.7
RcHm_v2.0_Chr1g0346091 Rosa chinensis HOM05D000104 ORTHO05D008354 6.3e-08 60.5 40 77.5
arahy.Tifrunner.gnm1.ann1.195NUB Arachis hypogaea HOM05D000104 ORTHO05D008354 8.2e-08 60.1 41 70.7
arahy.Tifrunner.gnm1.ann1.G09REB Arachis hypogaea HOM05D000104 ORTHO05D008354 8.2e-08 60.1 41 70.7
CANSAT21G1228 Cannabis sativa HOM05D000104 ORTHO05D008354 8.2e-08 60.1 41 73.2
SGA_v2.0_scaffold153G36942 Striga asiatica HOM05D000104 ORTHO05D008354 8.2e-08 60.1 40 72.5
DCAR_032106 Daucus carota HOM05D000104 ORTHO05D008354 1.1e-07 59.7 40 75.0
Lj1g0010595 Lotus japonicus HOM05D000104 ORTHO05D008354 1.1e-07 59.7 41 68.3
Lj1g0027884 Lotus japonicus HOM05D000104 ORTHO05D008354 1.1e-07 59.7 41 68.3
Prupe.2G122400 Prunus persica HOM05D000104 ORTHO05D008354 1.1e-07 59.7 40 75.0
SalBow5G1524 Salvia bowleyana HOM05D000104 ORTHO05D008354 1.1e-07 59.7 40 72.5
Cc02_g24760 Coffea canephora HOM05D000104 ORTHO05D008354 1.4e-07 59.3 40 70.0
MELO3C022279.2 Cucumis melo HOM05D000104 ORTHO05D008354 1.4e-07 59.3 41 73.2
Lalb_Chr03g0040101 Lupinus albus HOM05D000104 ORTHO05D008354 1.4e-07 59.3 39 76.9
MD07G1098400 Malus domestica HOM05D000104 ORTHO05D008354 1.4e-07 59.3 40 75.0
Nn1g00931 Nelumbo nucifera HOM05D000104 ORTHO05D008354 1.4e-07 59.3 47 61.7
PSO170G6209 Papaver somniferum HOM05D000104 ORTHO05D008354 1.4e-07 59.3 38 73.7
PSO407G0156 Papaver somniferum HOM05D000104 ORTHO05D008354 1.4e-07 59.3 38 73.7
AUR62004136 Chenopodium quinoa HOM05D000104 ORTHO05D008354 1.8e-07 58.9 38 78.9
Nitab4.5_0003110g0070 Nicotiana tabacum HOM05D000104 ORTHO05D008354 1.8e-07 58.9 40 70.0
HPP92_022464 Vanilla planifolia HOM05D000104 ORTHO05D008354 1.8e-07 58.9 43 67.4
GSVIVG01018218001 Vitis vinifera HOM05D000104 ORTHO05D008354 2.4e-07 58.5 42 69.0
BcaB07g31321 Brassica carinata HOM05D000104 ORTHO05D020014 3.1e-07 58.2 48 64.6
Peaxi162Scf00377g00830 Petunia axillaris HOM05D000104 ORTHO05D008354 3.1e-07 58.2 40 70.0
Ciclev10018815m.g Citrus clementina HOM05D000104 ORTHO05D008354 4.1e-07 57.8 42 69.0
PSO384G0152 Papaver somniferum HOM05D000104 ORTHO05D008354 4.1e-07 57.8 38 71.1
Solyc01g090650.1 Solanum lycopersicum HOM05D000104 ORTHO05D008354 4.1e-07 57.8 40 70.0
Sopen01g036380 Solanum pennellii HOM05D000104 ORTHO05D008354 4.1e-07 57.8 40 70.0
PGSC0003DMG400025981 Solanum tuberosum HOM05D000104 ORTHO05D008354 4.1e-07 57.8 40 70.0
Nitab4.5_0004415g0060 Nicotiana tabacum HOM05D000104 ORTHO05D008354 5.3e-07 57.4 40 70.0
CAN.G899.29 Capsicum annuum HOM05D000104 ORTHO05D008354 6.9e-07 57.0 40 67.5
CBR_g48847 Chara braunii HOM05D007240 ORTHO05D003552 4.5e-06 54.3 44 54.5


User provided reference genes

Program Settings