Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p50030 Brassica napus HOM05D001636 ORTHO05D009134 8.6e-190 666.8 325 100.0
BolC7t45436H Brassica oleracea HOM05D001636 ORTHO05D009134 2.0e-106 389.8 291 67.4
C07p50280 Brassica napus HOM05D001636 ORTHO05D009134 4.3e-104 382.1 295 67.1
C07p49280 Brassica napus HOM05D001636 ORTHO05D009134 9.5e-104 380.9 292 66.4
BcaNung03075 Brassica carinata HOM05D001636 ORTHO05D009134 6.1e-103 378.3 287 67.9
BolC7t45530H Brassica oleracea HOM05D001636 ORTHO05D009134 6.1e-103 378.3 287 67.9
BcaC06g33505 Brassica carinata HOM05D001636 ORTHO05D009134 2.0e-101 373.2 287 66.6
BraA03t14241Z Brassica rapa HOM05D001636 ORTHO05D009134 4.4e-101 372.1 277 67.5
C07p49300 Brassica napus HOM05D001636 ORTHO05D009134 5.7e-101 371.7 284 66.9
BolC7t45340H Brassica oleracea HOM05D001636 ORTHO05D009134 2.9e-100 369.4 287 65.9
BcaC06g31371 Brassica carinata HOM05D001636 ORTHO05D009134 4.9e-100 368.6 291 66.0
A03p50890 Brassica napus HOM05D001636 ORTHO05D009134 4.9e-100 368.6 284 66.5
BraA03t14176Z Brassica rapa HOM05D001636 ORTHO05D009134 1.4e-99 367.1 284 66.2
C07p48170 Brassica napus HOM05D001636 ORTHO05D009134 1.2e-98 364.0 290 65.2
BcaB02g08776 Brassica carinata HOM05D001636 ORTHO05D009134 3.9e-97 359.0 314 59.9
BcaNung05633 Brassica carinata HOM05D001636 ORTHO05D009134 5.0e-97 358.6 287 64.5
C07p53540 Brassica napus HOM05D001636 ORTHO05D009134 4.1e-91 339.0 287 60.6
BcaNung02680 Brassica carinata HOM05D001636 ORTHO05D009134 2.7e-90 336.3 171 93.6
BraA03t14586Z Brassica rapa HOM05D001636 ORTHO05D009134 4.1e-75 285.8 242 60.7
A03p55260 Brassica napus HOM05D001636 ORTHO05D009134 5.8e-69 265.4 209 62.7
BolC5t32469H Brassica oleracea HOM05D001636 ORTHO05D009134 1.9e-67 260.4 251 55.4
C09p57360 Brassica napus HOM05D001636 ORTHO05D009134 2.4e-62 243.4 303 46.2
BolC9t58608H Brassica oleracea HOM05D001636 ORTHO05D009134 2.4e-62 243.4 303 46.2
C03p60330 Brassica napus HOM05D001636 ORTHO05D009134 1.2e-61 241.1 314 45.9
C02p62340 Brassica napus HOM05D001636 ORTHO05D009134 1.5e-61 240.7 322 44.1
BcaC03g18185 Brassica carinata HOM05D001636 ORTHO05D009134 7.6e-61 238.4 268 47.4
A02p42600 Brassica napus HOM05D001636 ORTHO05D009134 1.1e-59 234.6 268 45.9
BolC3t18292H Brassica oleracea HOM05D001636 ORTHO05D009134 2.1e-58 230.3 283 46.6
BcaNung02002 Brassica carinata HOM05D001636 ORTHO05D009134 3.5e-58 229.6 290 44.1
BraA06t26475Z Brassica rapa HOM05D001636 ORTHO05D009134 3.0e-57 226.5 293 44.0
C03p60230 Brassica napus HOM05D001636 ORTHO05D009134 3.9e-57 226.1 282 45.7
BolC2t11826H Brassica oleracea HOM05D001636 ORTHO05D009134 3.9e-57 226.1 298 44.3
AL3G40410 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 8.7e-57 224.9 293 44.4
BolC7t44832H Brassica oleracea HOM05D001636 ORTHO05D009134 8.7e-57 224.9 291 44.0
AL8G35170 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 2.5e-56 223.4 292 44.9
A06p35510 Brassica napus HOM05D001636 ORTHO05D009134 1.3e-55 221.1 305 42.0
Carub.0003s0625 Capsella rubella HOM05D001636 ORTHO05D009134 1.6e-55 220.7 283 44.2
Thhalv10005934m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 1.8e-54 217.2 277 45.1
BcaB02g09846 Brassica carinata HOM05D001165 ORTHO05D001347 4.0e-54 216.1 293 42.7
C07p43040 Brassica napus HOM05D001636 ORTHO05D009134 5.3e-54 215.7 316 40.5
BolC6t39302H Brassica oleracea HOM05D001636 ORTHO05D009134 5.3e-54 215.7 331 41.4
AL5G45620 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 6.9e-54 215.3 268 46.6
AT3G62850 Arabidopsis thaliana HOM05D001636 ORTHO05D009134 6.9e-54 215.3 315 41.6
C02p17550 Brassica napus HOM05D001636 ORTHO05D009134 9.0e-54 214.9 293 43.7
BolC3t16817H Brassica oleracea HOM05D001636 ORTHO05D009134 3.4e-53 213.0 280 43.2
C02p17520 Brassica napus HOM05D001636 ORTHO05D009134 4.5e-53 212.6 290 43.4
A07p35040 Brassica napus HOM05D001636 ORTHO05D009134 5.8e-53 212.2 331 40.8
BcaC03g18165 Brassica carinata HOM05D001636 ORTHO05D009134 7.6e-53 211.8 302 41.4
BcaC01g04096 Brassica carinata HOM05D001636 ORTHO05D009134 1.3e-52 211.1 280 42.9
C04p70100 Brassica napus HOM05D001636 ORTHO05D009134 2.2e-52 210.3 321 40.5
Thhalv10000121m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 2.2e-52 210.3 312 40.7
A03p51560 Brassica napus HOM05D001636 ORTHO05D009134 4.9e-52 209.1 171 62.0
BcaC09g52273 Brassica carinata HOM05D001636 ORTHO05D009134 3.2e-51 206.5 249 46.2
BcaC08g46306 Brassica carinata HOM05D001636 ORTHO05D009134 9.3e-51 204.9 246 46.7
C02p62510 Brassica napus HOM05D001636 ORTHO05D009134 1.0e-49 201.4 279 43.0
BraA02t09188Z Brassica rapa HOM05D001636 ORTHO05D009134 2.3e-49 200.3 271 42.4
C08p15280 Brassica napus HOM05D001636 ORTHO05D009134 5.1e-49 199.1 160 65.6
BcaC03g14332 Brassica carinata HOM05D001636 ORTHO05D009134 8.7e-49 198.4 317 40.4
BcaC01g02796 Brassica carinata HOM05D001636 ORTHO05D009134 5.3e-46 189.1 263 44.1
BcaC04g23180 Brassica carinata HOM05D001636 ORTHO05D009134 9.0e-46 188.3 282 41.8
BolC4t28509H Brassica oleracea HOM05D001636 ORTHO05D009134 4.5e-45 186.0 292 40.4
Carub.0002s1385 Capsella rubella HOM05D001636 ORTHO05D009134 5.8e-45 185.7 291 39.5
CARHR264460 Cardamine hirsuta HOM05D001636 ORTHO05D009134 3.8e-44 183.0 165 57.6
BcaC01g02793 Brassica carinata HOM05D001636 ORTHO05D009134 7.1e-43 178.7 172 53.5
BcaB02g09721 Brassica carinata HOM05D001636 ORTHO05D009134 3.5e-42 176.4 281 39.9
C03p63560 Brassica napus HOM05D001636 ORTHO05D009134 3.3e-40 169.9 256 42.2
BcaC03g14330 Brassica carinata HOM05D001636 ORTHO05D009134 1.1e-38 164.9 179 48.6
BolC6t39297H Brassica oleracea HOM05D001636 ORTHO05D009134 1.1e-38 164.9 156 53.8
BolC3t18612H Brassica oleracea HOM05D001636 ORTHO05D009134 1.8e-38 164.1 159 56.0
BcaC01g02551 Brassica carinata HOM05D001636 ORTHO05D009134 2.4e-38 163.7 159 56.0
BolC7t45505H Brassica oleracea HOM05D001636 ORTHO05D009134 3.4e-37 159.8 146 58.2
BcaNung02679 Brassica carinata HOM05D001636 ORTHO05D021846 3.2e-35 153.3 74 100.0
C03p60300 Brassica napus HOM05D001636 ORTHO05D009134 1.1e-32 144.8 242 41.3
C06p41230 Brassica napus HOM05D001636 ORTHO05D009134 7.4e-32 142.1 241 39.4
BcaC01g02791 Brassica carinata HOM05D001636 ORTHO05D009134 9.7e-32 141.7 178 47.8
C02p25960 Brassica napus HOM05D001636 ORTHO05D009134 9.7e-32 141.7 179 46.4
Carub.0008s0155 Capsella rubella HOM05D001636 ORTHO05D009134 4.8e-31 139.4 134 52.2
CARHR175440 Cardamine hirsuta HOM05D001636 ORTHO05D009134 2.6e-29 133.7 181 43.6
BraA05t18996Z Brassica rapa HOM05D001636 ORTHO05D018456 2.2e-28 130.6 290 32.1
BcaC02g12798 Brassica carinata HOM05D001636 ORTHO05D018456 5.5e-27 125.9 294 31.6
C04p00350 Brassica napus HOM05D001636 ORTHO05D018456 4.6e-26 122.9 294 31.3
BolC4t21677H Brassica oleracea HOM05D001636 ORTHO05D018456 4.6e-26 122.9 294 31.3
BolSC55t61225H Brassica oleracea HOM05D001636 ORTHO05D018456 1.0e-25 121.7 294 29.9
BNapus_Darmor_BZH_scaffold_188p00110 Brassica napus HOM05D001636 ORTHO05D018456 1.4e-25 121.3 294 31.0
A08p32940 Brassica napus HOM05D001636 ORTHO05D009134 1.1e-24 118.2 91 64.8
AL3G38360 Arabidopsis lyrata HOM05D001636 ORTHO05D018456 1.5e-24 117.9 296 30.4
C01p33890 Brassica napus HOM05D001636 ORTHO05D009134 2.0e-21 107.5 143 46.9
BcaC02g11205 Brassica carinata HOM05D001636 ORTHO05D009134 6.5e-20 102.4 191 38.7
Thhalv10019735m.g Eutrema salsugineum HOM05D001456 ORTHO05D009134 3.2e-19 100.1 158 38.6
Carub.0006s0379 Capsella rubella HOM05D001636 ORTHO05D009134 9.4e-19 98.6 157 37.6
BcaC08g46311 Brassica carinata HOM05D001636 ORTHO05D009134 1.2e-18 98.2 69 63.8
C06p41280 Brassica napus HOM05D001636 ORTHO05D009134 2.7e-18 97.1 141 44.0
Thhalv10024069m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 3.6e-18 96.7 194 34.5
BolC2t07887H Brassica oleracea HOM05D001636 ORTHO05D009134 2.3e-17 94.0 155 40.0
BcaC03g15053 Brassica carinata HOM05D001636 ORTHO05D009134 6.7e-17 92.4 152 40.8
BcaB04g19226 Brassica carinata HOM05D001636 ORTHO05D009134 8.8e-17 92.0 150 40.7
BolC2t08674H Brassica oleracea HOM05D001636 ORTHO05D009134 2.8e-15 87.0 115 40.9
BolC1t02221H Brassica oleracea HOM05D001636 ORTHO05D009134 9.1e-14 82.0 147 36.1
BcaC01g02789 Brassica carinata HOM05D005381 ORTHO05D006674 2.9e-12 77.0 82 51.2
A03p55270 Brassica napus HOM05D001636 ORTHO05D009134 3.8e-12 76.6 103 45.6
BcaB06g29167 Brassica carinata HOM05D001636 ORTHO05D009134 5.0e-12 76.3 160 35.0
BcaB03g15112 Brassica carinata HOM05D001636 ORTHO05D009134 8.5e-12 75.5 109 42.2
BolC8t49157H Brassica oleracea HOM05D001636 ORTHO05D009134 3.2e-11 73.6 150 34.0
BolC7t45437H Brassica oleracea HOM05D001636 ORTHO05D009134 4.2e-11 73.2 56 60.7
BolSC55t61220H Brassica oleracea HOM05D001636 ORTHO05D011036 2.1e-10 70.9 48 66.7
BolC1t03356H Brassica oleracea HOM05D001636 ORTHO05D009134 1.8e-09 67.8 121 36.4
BraA06t25930Z Brassica rapa HOM05D001636 ORTHO05D009134 1.8e-09 67.8 39 82.1
BcaC02g12800 Brassica carinata HOM05D001636 ORTHO05D018456 3.0e-09 67.0 261 26.8
Dinv24508 Davidia involucrata HOM05D001456 ORTHO05D002799 7.5e-08 62.4 160 26.9
BcaC06g33506 Brassica carinata HOM05D001636 ORTHO05D009134 1.3e-07 61.6 39 74.4
BolC3t18295H Brassica oleracea HOM05D001636 ORTHO05D021846 2.2e-07 60.8 91 40.7
AL1G10300 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 3.7e-07 60.1 38 71.1
AL1G10660 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 3.7e-07 60.1 38 71.1
BolC2t12194H Brassica oleracea HOM05D001456 ORTHO05D014991 3.7e-07 60.1 170 25.3
C03p60400 Brassica napus HOM05D001636 ORTHO05D021846 4.8e-07 59.7 90 41.1
Carub.0007s3604 Capsella rubella HOM05D001456 ORTHO05D023701 4.8e-07 59.7 161 31.1
A01p18890 Brassica napus HOM05D006174 ORTHO05D007987 6.3e-07 59.3 191 26.7
BraA01t01830Z Brassica rapa HOM05D006174 ORTHO05D007987 6.3e-07 59.3 191 26.7
Thhalv10022152m.g Eutrema salsugineum HOM05D001456 ORTHO05D015898 6.3e-07 59.3 87 40.2
BcaC01g02792 Brassica carinata HOM05D005381 ORTHO05D006674 1.1e-06 58.5 89 40.4
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 1.1e-06 58.5 162 24.1
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 1.1e-06 58.5 164 23.8
A03p46830 Brassica napus HOM05D001456 ORTHO05D014991 1.1e-06 58.5 162 24.1
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 1.1e-06 58.5 162 24.1
BcaB04g19227 Brassica carinata HOM05D001636 ORTHO05D009134 1.4e-06 58.2 37 70.3
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 1.4e-06 58.2 162 25.3
Glyma.19G225800 Glycine max HOM05D001456 ORTHO05D002799 1.4e-06 58.2 160 27.5
Psat3g014920 Pisum sativum HOM05D001456 ORTHO05D002799 1.4e-06 58.2 157 26.8
AL7G41400 Arabidopsis lyrata HOM05D008913 ORTHO05D011317 1.8e-06 57.8 147 29.3
A06p29820 Brassica napus HOM05D001636 ORTHO05D009134 1.8e-06 57.8 65 49.2
C02p61420 Brassica napus HOM05D001456 ORTHO05D014991 1.8e-06 57.8 168 25.0
BolC2t12309H Brassica oleracea HOM05D001636 ORTHO05D009134 1.8e-06 57.8 38 71.1
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.8e-06 57.8 219 26.0
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 1.8e-06 57.8 160 26.9
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 2.4e-06 57.4 160 26.9
Dinv12091 Davidia involucrata HOM05D001456 ORTHO05D002799 2.4e-06 57.4 176 24.4
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.4e-06 57.4 157 25.5
BcaB07g31709 Brassica carinata HOM05D008913 ORTHO05D011317 3.1e-06 57.0 149 26.2
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 3.1e-06 57.0 160 25.0
BcaC09g50570 Brassica carinata HOM05D001636 ORTHO05D040027 4.1e-06 56.6 45 51.1
C01p23810 Brassica napus HOM05D001636 ORTHO05D040027 4.1e-06 56.6 45 51.1
C01p23820 Brassica napus HOM05D001636 ORTHO05D024225 4.1e-06 56.6 45 51.1
C05p23360 Brassica napus HOM05D001456 ORTHO05D018734 4.1e-06 56.6 131 29.0
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 4.1e-06 56.6 162 23.5
BraA06t25197Z Brassica rapa HOM05D001636 ORTHO05D024225 4.1e-06 56.6 171 29.2
Carub.0008s0675 Capsella rubella HOM05D001636 ORTHO05D013186 4.1e-06 56.6 105 34.3
Peaxi162Scf00357g00114 Petunia axillaris HOM05D001456 ORTHO05D002799 4.1e-06 56.6 161 25.5
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 4.1e-06 56.6 160 26.9
BcaC06g33174 Brassica carinata HOM05D001456 ORTHO05D014991 5.3e-06 56.2 165 25.5
C03p60340 Brassica napus HOM05D001636 ORTHO05D021846 5.3e-06 56.2 88 39.8
BolC5t31038H Brassica oleracea HOM05D001456 ORTHO05D018734 5.3e-06 56.2 139 27.3
Glyma.03G228500 Glycine max HOM05D001456 ORTHO05D002799 5.3e-06 56.2 160 26.9
Phvul.001G222300 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 5.3e-06 56.2 161 26.7
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 5.3e-06 56.2 158 26.6
BolC1t04730H Brassica oleracea HOM05D008913 ORTHO05D011317 7.0e-06 55.8 159 28.3
Ca_09277_v3 Cicer arietinum L. HOM05D001456 ORTHO05D002799 7.0e-06 55.8 160 25.6
GSVIVG01028213001 Vitis vinifera HOM05D001456 ORTHO05D002799 7.0e-06 55.8 161 24.2
Medtr7g111570 Medicago truncatula HOM05D001456 ORTHO05D002799 9.1e-06 55.5 160 26.2


User provided reference genes

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