Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 0.0e+00 1097.8 569 100.0
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 0.0e+00 1097.8 569 100.0
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 0.0e+00 1095.5 569 99.8
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 0.0e+00 1076.2 569 97.5
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 2.1e-308 1061.6 569 96.3
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 4.1e-296 1020.8 569 92.8
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 3.1e-291 1004.6 571 90.4
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 7.1e-288 993.4 571 90.2
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 1.6e-279 965.7 571 86.2
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.3e-278 962.6 571 87.4
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 3.3e-277 958.0 571 87.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.4e-275 951.8 571 87.2
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.2e-272 941.4 571 86.7
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 1.5e-269 932.6 571 84.8
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.6e-260 902.5 571 81.6
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 4.0e-259 897.9 571 83.2
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 4.6e-255 884.4 571 81.3
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 6.0e-255 884.0 583 80.1
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 5.1e-254 880.9 571 82.5
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.8e-252 874.4 571 81.4
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 6.9e-251 870.5 537 85.3
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 5.8e-250 867.5 571 80.4
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 6.5e-249 864.0 571 80.4
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.1e-247 859.0 574 77.4
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.1e-243 845.1 569 78.7
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 6.3e-220 767.7 563 72.3
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.8e-217 758.4 567 69.5
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.9e-216 756.1 566 70.1
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 9.4e-216 753.8 566 69.1
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 2.1e-215 752.7 566 69.3
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 4.7e-215 751.5 567 69.5
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.8e-214 749.6 579 66.8
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.8e-214 749.6 567 69.1
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 9.7e-213 743.8 566 68.6
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.4e-211 740.0 565 67.8
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 4.1e-211 738.4 568 68.1
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.0e-210 736.1 567 68.4
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.9e-209 732.3 571 69.2
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 5.5e-208 728.0 402 91.0
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.0e-206 723.8 562 66.9
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 4.0e-206 721.8 565 66.7
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.0e-205 719.5 567 65.8
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 7.5e-205 717.6 569 66.4
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 4.1e-203 711.8 569 65.0
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 7.7e-202 707.6 566 65.5
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.3e-201 706.8 566 64.7
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.1e-200 703.7 575 65.4
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.9e-200 703.0 567 66.3
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.9e-200 703.0 566 65.4
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 5.5e-200 701.4 384 91.1
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.2e-199 700.3 565 65.7
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.2e-199 700.3 573 64.9
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.6e-199 699.9 572 63.3
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 8.0e-199 697.6 567 65.3
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-198 697.2 565 65.8
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.8e-198 696.4 570 66.1
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 2.3e-198 696.0 568 62.9
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.2e-198 694.9 569 65.2
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-197 693.7 579 64.4
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.5e-197 693.3 578 64.7
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.7e-196 689.9 566 63.8
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 8.3e-196 687.6 568 63.6
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 3.1e-195 685.6 569 65.2
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.1e-195 685.3 577 62.7
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.1e-195 685.3 574 63.2
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.1e-195 685.3 574 63.1
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 5.4e-195 684.9 570 62.6
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 5.4e-195 684.9 567 65.1
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.9e-194 681.4 565 64.6
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.9e-194 681.4 565 64.6
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 7.8e-194 681.0 568 63.2
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 2.3e-193 679.5 579 62.2
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.9e-193 679.1 567 65.4
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 6.6e-193 677.9 567 63.3
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.5e-192 676.8 576 63.5
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 3.3e-192 675.6 561 61.9
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.3e-192 675.2 510 67.8
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.2e-190 668.3 566 64.5
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 4.4e-189 665.2 570 63.7
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 7.5e-189 664.5 567 62.1
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 9.8e-189 664.1 566 62.4
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.7e-188 663.3 561 61.1
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.2e-188 662.9 502 67.1
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 6.4e-188 661.4 576 62.2
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 8.3e-188 661.0 570 62.8
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.5e-184 650.2 473 76.1
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 7.3e-184 647.9 565 61.1
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.6e-183 646.7 564 60.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.7e-183 645.2 593 57.8
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 5.2e-182 641.7 433 73.9
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 2.0e-181 639.8 569 61.3
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 4.1e-179 632.1 566 61.1
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 9.2e-179 630.9 574 59.2
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 9.2e-179 630.9 570 59.5
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 3.9e-177 625.5 565 60.0
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 3.9e-177 625.5 577 58.8
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 5.0e-177 625.2 572 60.7
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 6.6e-177 624.8 566 60.1
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 4.3e-176 622.1 570 58.6
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 2.1e-175 619.8 570 58.9
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 2.1e-175 619.8 574 58.9
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.8e-174 616.7 572 60.0
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.8e-174 616.7 567 58.6
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-173 614.0 445 68.5
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.4e-171 607.1 436 70.4
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 9.2e-171 604.4 573 56.0
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.0e-169 599.4 402 72.4
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.1e-168 597.4 579 57.0
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 5.6e-168 595.1 564 57.4
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 8.1e-167 591.3 564 59.2
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 2.0e-165 586.6 564 57.1
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 4.4e-165 585.5 445 64.3
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.5e-160 569.7 579 57.2
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 4.7e-159 565.5 582 55.0
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 8.4e-156 554.7 594 52.0
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.9e-155 553.5 570 55.8
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.4e-155 552.0 565 55.2
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.1e-152 544.3 568 53.7
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 2.8e-151 539.7 339 76.4
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 2.4e-147 526.6 565 54.7
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.8e-142 510.4 556 53.8
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.6e-141 506.5 522 52.5
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.6e-141 506.5 560 53.4
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.3e-140 504.2 568 50.5
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.2e-133 481.1 302 75.2
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.7e-127 459.5 456 48.5
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.3e-103 381.3 390 47.7
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 4.1e-102 376.3 394 54.6
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 3.6e-98 363.2 325 65.5
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.5e-91 341.3 516 45.2
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.7e-87 327.8 391 48.8
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 6.6e-84 315.8 199 73.9
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.0e-82 308.9 283 59.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.3e-75 286.6 211 64.5
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.6e-72 277.3 359 45.4
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.6e-61 240.0 156 72.4
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.7e-55 221.5 198 57.6
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 7.1e-54 216.1 281 51.2
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 2.9e-47 194.1 220 56.8
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.8e-41 174.9 193 54.9
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.2e-40 172.2 281 40.2
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 2.8e-34 151.0 503 26.6
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 6.7e-28 129.8 92 64.1
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-27 129.0 93 63.4
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.9e-20 104.0 152 45.4
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 2.8e-18 97.8 116 46.6
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 3.7e-18 97.4 181 29.3
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.7e-18 97.4 79 59.5
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 4.5e-16 90.5 51 80.4
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 7.6e-16 89.7 71 57.7
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-15 89.0 70 58.6
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.5e-14 84.7 71 54.9
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.7e-13 81.3 88 51.1
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 2.7e-13 81.3 74 56.8
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.8e-12 78.6 134 40.3
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.9e-07 61.2 64 46.9


User provided reference genes

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