Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 9.8e-124 446.8 226 100.0
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.1e-114 416.8 226 94.2
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.1e-114 416.8 226 94.7
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 4.6e-113 411.4 226 92.0
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.1e-110 402.5 226 89.8
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 4.6e-105 384.8 226 86.3
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.0e-104 383.6 226 85.4
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 5.0e-104 381.3 226 85.8
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 6.6e-104 380.9 226 85.4
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 2.5e-103 379.0 226 85.0
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 5.6e-103 377.9 226 84.5
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 2.8e-102 375.6 226 84.1
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.8e-101 372.9 227 84.1
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 4.0e-101 371.7 226 83.2
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 4.0e-101 371.7 216 87.0
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 4.0e-101 371.7 226 83.2
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 8.9e-101 370.5 226 82.3
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 9.8e-100 367.1 226 81.4
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 8.3e-99 364.0 204 88.7
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 5.6e-95 351.3 221 79.6
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.1e-94 349.4 217 80.6
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 5.2e-85 318.2 209 73.2
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.8e-85 317.8 210 75.2
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 8.9e-85 317.4 210 75.2
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.0e-84 316.2 219 74.4
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 4.4e-84 315.1 225 72.0
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 7.6e-84 314.3 219 70.8
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 9.9e-84 313.9 228 71.1
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.2e-83 312.8 210 74.8
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 2.2e-83 312.8 217 72.4
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.8e-83 312.0 219 73.1
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 4.9e-83 311.6 226 70.4
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.4e-82 310.1 216 72.2
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.9e-82 309.7 227 67.4
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.9e-82 309.7 221 69.2
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.4e-82 309.3 217 72.8
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 4.2e-82 308.5 215 71.2
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 7.1e-82 307.8 230 68.3
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.3e-82 307.4 219 73.1
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.2e-81 307.0 226 66.8
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.6e-81 306.6 247 64.0
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 3.5e-81 305.4 226 65.9
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 4.6e-81 305.1 226 68.1
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 4.6e-81 305.1 219 70.3
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.6e-81 305.1 218 69.7
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 6.0e-81 304.7 224 69.6
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 6.0e-81 304.7 225 69.8
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 7.8e-81 304.3 216 70.4
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-80 303.5 229 68.1
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.7e-80 303.1 229 67.7
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.7e-80 303.1 229 67.7
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.7e-80 303.1 227 67.4
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.0e-80 302.4 226 65.9
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.0e-80 302.4 218 69.3
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 5.1e-80 301.6 217 71.4
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 5.1e-80 301.6 220 69.5
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 5.1e-80 301.6 229 65.9
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 5.1e-80 301.6 226 68.1
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 8.7e-80 300.8 224 67.0
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.5e-79 300.1 215 71.2
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.9e-79 299.7 216 68.5
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 2.5e-79 299.3 224 67.0
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 4.3e-79 298.5 226 65.9
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.6e-79 298.1 222 68.0
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 7.3e-79 297.7 217 68.7
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 7.3e-79 297.7 224 66.5
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 9.6e-79 297.4 226 65.5
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 9.6e-79 297.4 226 66.8
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.6e-78 296.6 231 66.2
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.6e-78 296.6 224 67.4
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 2.1e-78 296.2 221 69.2
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 2.1e-78 296.2 217 68.7
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 2.1e-78 296.2 217 68.7
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 3.6e-78 295.4 206 71.4
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 4.8e-78 295.0 224 67.9
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 4.8e-78 295.0 226 65.9
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 4.8e-78 295.0 206 71.4
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.8e-78 295.0 218 69.3
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 4.8e-78 295.0 217 71.4
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 1.4e-77 293.5 217 71.0
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.4e-77 293.5 218 67.9
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.8e-77 293.1 233 64.4
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 2.4e-77 292.7 229 66.8
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 5.3e-77 291.6 217 69.1
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 5.3e-77 291.6 221 63.8
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 5.3e-77 291.6 228 64.5
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 6.9e-77 291.2 220 65.9
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 9.0e-77 290.8 206 71.8
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 9.0e-77 290.8 206 71.8
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 9.0e-77 290.8 213 67.1
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.2e-76 290.4 216 66.7
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.0e-76 289.7 222 65.3
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 4.4e-76 288.5 273 58.6
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 4.4e-76 288.5 224 64.7
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 2.2e-75 286.2 216 67.1
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.4e-74 283.5 217 65.9
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.9e-74 283.1 209 65.6
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.9e-74 283.1 217 64.1
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.9e-74 283.1 217 63.1
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 2.4e-74 282.7 217 66.4
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.4e-74 282.7 211 65.4
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 3.2e-74 282.3 217 65.0
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 1.6e-73 280.0 258 58.9
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.1e-73 279.6 218 63.8
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 2.7e-73 279.3 217 64.5
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 3.5e-73 278.9 213 68.1
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.5e-71 273.5 218 64.7
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.9e-71 273.1 224 62.5
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 3.3e-71 272.3 243 59.7
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.6e-71 271.6 217 64.1
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.6e-70 270.0 220 61.8
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 8.1e-70 267.7 230 60.9
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 9.0e-69 264.2 219 61.2
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 5.8e-68 261.5 234 61.5
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.3e-67 260.4 307 48.2
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.7e-67 260.0 171 76.6
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 8.4e-67 257.7 216 63.0
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 4.2e-66 255.4 218 61.5
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 5.5e-66 255.0 218 61.5
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 7.9e-65 251.1 200 63.5
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-64 249.6 165 75.2
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 2.5e-63 246.1 171 70.8
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 4.8e-62 241.9 226 58.8
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 3.2e-58 229.2 209 58.4
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 3.2e-58 229.2 226 56.6
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 9.3e-58 227.6 230 55.7
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 1.2e-57 227.3 221 52.9
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 3.5e-57 225.7 216 58.3
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.0e-56 224.2 231 53.7
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.1e-55 220.7 177 59.3
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 5.7e-55 218.4 119 85.7
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.1e-53 214.2 208 56.2
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.4e-53 213.8 168 62.5
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 2.4e-53 213.0 216 51.4
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 4.1e-53 212.2 119 84.0
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.2e-52 210.7 252 46.4
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 1.5e-52 210.3 104 98.1
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.5e-51 204.9 116 80.2
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 6.5e-51 204.9 151 69.5
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 4.6e-49 198.7 172 62.8
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 1.5e-47 193.7 148 69.6
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.5e-47 193.7 163 60.1
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 1.2e-44 184.1 226 46.9
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 3.4e-44 182.6 118 72.0
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.3e-38 164.1 225 44.4
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 3.4e-36 156.0 302 35.1
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 7.7e-36 154.8 186 45.7
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.3e-35 154.1 147 55.8
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.6e-33 147.1 191 48.7
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.3e-32 143.3 180 46.1
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 5.3e-29 132.1 81 77.8
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.7e-25 119.0 126 54.8
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 3.0e-24 116.3 74 74.3
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 2.2e-22 110.2 67 76.1
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 8.2e-22 108.2 80 68.8
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.4e-21 106.7 161 42.9
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 3.1e-21 106.3 114 51.8
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 2.0e-20 103.6 81 65.4
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.0e-20 103.6 169 39.1
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 7.7e-20 101.7 91 60.4
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.3e-19 100.9 66 75.8
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.7e-19 100.5 59 81.4
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.2e-19 100.1 209 35.9
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 2.5e-18 96.7 91 57.1
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.8e-16 90.5 170 37.1
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 4.0e-16 89.4 158 36.7
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.8e-14 83.2 106 45.3
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.4e-13 80.9 102 48.0
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 2.2e-11 73.6 167 32.9
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.6e-09 67.4 67 50.7
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 2.7e-09 66.6 52 69.2
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 4.0e-08 62.8 46 63.0
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.8e-06 56.6 46 56.5
Cre16.g667701 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 8.3e-06 55.1 44 63.6


User provided reference genes

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