Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 3.9e-176 621.3 303 100.0
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 3.9e-176 621.3 303 100.0
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 4.4e-172 607.8 303 97.4
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 5.8e-172 607.4 304 98.4
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 5.8e-172 607.4 303 98.3
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 2.1e-169 599.0 303 96.0
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 2.3e-168 595.5 303 94.7
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 5.1e-168 594.3 303 97.4
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 1.2e-164 583.2 304 94.4
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.7e-163 579.3 303 92.7
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 9.3e-162 573.5 303 93.1
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 2.1e-161 572.4 303 91.1
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 2.7e-161 572.0 303 90.8
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 2.7e-161 572.0 303 91.4
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 6.0e-161 570.9 303 90.8
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.8e-160 569.3 304 92.4
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 4.5e-156 554.7 291 94.5
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 1.6e-145 519.6 293 84.0
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 6.0e-145 517.7 316 83.5
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 2.8e-142 508.8 304 85.2
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 2.8e-142 508.8 304 85.2
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.7e-139 499.6 301 80.1
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 4.2e-138 495.0 301 79.1
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 2.1e-137 492.7 300 79.0
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 3.6e-137 491.9 301 78.4
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 7.9e-137 490.7 302 78.8
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 1.3e-136 490.0 297 78.8
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 3.0e-136 488.8 303 77.2
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 1.3e-134 483.4 327 75.5
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 1.3e-134 483.4 300 75.7
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 1.6e-134 483.0 295 77.3
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.8e-134 482.3 285 77.9
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 3.7e-134 481.9 306 74.2
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.4e-133 479.9 305 74.8
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 2.4e-133 479.2 296 76.0
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 3.1e-133 478.8 298 75.2
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 3.1e-133 478.8 296 77.0
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 6.9e-133 477.6 296 76.0
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 1.2e-132 476.9 296 76.0
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.0e-132 476.1 296 77.0
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 2.0e-132 476.1 298 75.5
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 3.4e-132 475.3 292 78.1
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 4.5e-132 474.9 297 74.7
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 5.9e-132 474.6 284 76.8
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 1.0e-131 473.8 297 74.4
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.7e-131 473.0 305 75.4
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 2.2e-131 472.6 296 75.3
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.2e-131 472.6 297 74.4
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 3.8e-131 471.9 297 74.7
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 5.0e-131 471.5 303 74.9
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 2.5e-130 469.2 296 75.7
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 2.5e-130 469.2 305 74.4
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 4.2e-130 468.4 297 74.1
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 5.5e-130 468.0 305 74.8
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 9.4e-130 467.2 295 76.6
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 9.4e-130 467.2 296 76.0
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 1.6e-129 466.5 298 73.5
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.6e-129 466.5 306 72.5
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 2.1e-129 466.1 295 75.6
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 3.6e-129 465.3 294 73.1
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 7.9e-129 464.2 303 73.3
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 2.3e-128 462.6 290 76.6
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 3.9e-128 461.8 283 76.0
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 5.1e-128 461.5 279 78.9
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 1.1e-127 460.3 303 73.3
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 2.0e-127 459.5 298 73.5
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 2.0e-127 459.5 303 72.3
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 2.0e-127 459.5 260 82.7
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 3.3e-127 458.8 288 76.4
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 5.7e-127 458.0 303 71.6
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 3.7e-126 455.3 295 72.2
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.8e-125 453.0 321 69.2
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.8e-125 453.0 304 71.1
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 1.8e-125 453.0 274 77.7
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 4.5e-124 448.4 295 70.5
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.0e-123 447.2 303 69.3
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 2.9e-123 445.7 302 69.5
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 3.8e-123 445.3 295 71.9
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 1.1e-122 443.7 301 71.4
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.1e-122 443.7 303 70.3
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 1.4e-122 443.4 296 70.9
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.9e-122 443.0 299 71.6
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 1.9e-122 443.0 296 71.3
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 1.2e-121 440.3 311 67.8
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.2e-121 440.3 300 70.3
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 1.2e-121 440.3 294 69.7
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 7.4e-119 431.0 304 68.4
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 1.1e-117 427.2 407 56.0
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 5.9e-116 421.4 280 71.4
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 1.0e-115 420.6 302 67.2
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 2.5e-114 416.0 287 70.0
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.3e-110 403.7 259 73.7
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 2.2e-110 402.9 301 66.4
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 3.7e-110 402.1 270 70.4
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 2.2e-107 392.9 246 76.4
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 6.5e-107 391.3 239 76.2
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 4.2e-106 388.7 296 65.9
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 9.1e-101 370.9 302 61.3
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 2.5e-98 362.8 249 69.9
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 3.2e-98 362.5 212 82.1
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 6.1e-97 358.2 311 57.6
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 8.8e-96 354.4 211 81.0
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 7.8e-92 341.3 282 62.1
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 6.6e-91 338.2 202 77.7
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 8.6e-91 337.8 202 76.7
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 8.0e-89 331.3 243 68.7
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 2.6e-87 326.2 257 65.8
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.2e-73 280.8 295 52.2
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 6.4e-70 268.5 269 49.8
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.0e-67 261.2 192 65.6
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 8.1e-65 251.5 258 48.1
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 4.0e-64 249.2 270 52.2
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.5e-55 220.7 291 47.1
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 4.9e-54 215.7 174 60.9
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 1.4e-53 214.2 262 45.4
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 6.6e-51 205.3 128 72.7
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.3e-46 191.0 142 67.6
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-41 174.1 108 78.7
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 6.2e-41 172.2 97 83.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 1.1e-37 161.4 162 56.2
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 2.3e-35 153.7 100 72.0
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.6e-33 147.5 81 80.2
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 3.5e-28 129.8 66 81.8
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 1.2e-15 88.2 56 73.2
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.0e-14 85.1 67 61.2
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 9.1e-08 62.0 57 57.9
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 1.2e-07 61.6 33 78.8
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 1.5e-07 61.2 35 74.3
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.0e-06 58.5 37 78.4
A06p15030 Brassica napus HOM05D006150 ORTHO05D096911 1.7e-06 57.8 28 92.9


User provided reference genes

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