Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p48180 Brassica napus HOM05D000814 ORTHO05D101799 3.1e-23 110.9 55 100.0
BcaC09g50397 Brassica carinata HOM05D000814 ORTHO05D005211 1.8e-15 85.1 44 90.9
A01p20630 Brassica napus HOM05D000814 ORTHO05D021422 1.8e-15 85.1 44 90.9
C01p25970 Brassica napus HOM05D000814 ORTHO05D005211 1.8e-15 85.1 44 90.9
BolC1t02542H Brassica oleracea HOM05D000814 ORTHO05D005211 1.8e-15 85.1 44 90.9
BraA01t01990Z Brassica rapa HOM05D000814 ORTHO05D005211 1.8e-15 85.1 44 90.9
CARHR223190 Cardamine hirsuta HOM05D000814 ORTHO05D005211 5.3e-15 83.6 48 83.3
AT4G16670 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 4.5e-14 80.5 42 88.1
Thhalv10025212m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 5.8e-14 80.1 44 86.4
AL7G38060 Arabidopsis lyrata HOM05D000814 ORTHO05D021422 1.0e-13 79.3 44 84.1
BcaNung02854 Brassica carinata HOM05D000814 ORTHO05D005211 1.3e-13 79.0 50 76.0
BcaNung00163 Brassica carinata HOM05D000814 ORTHO05D005211 2.2e-13 78.2 42 81.0
Carub.0007s2473 Capsella rubella HOM05D000814 ORTHO05D005211 2.2e-13 78.2 42 85.7
Sp7g15280 Schrenkiella parvula HOM05D000814 ORTHO05D005211 3.2e-12 74.3 44 79.5
CiPaw.11G080500 Carya illinoinensis HOM05D000814 ORTHO05D005211 7.4e-09 63.2 41 61.0
Duzib084G0292 Durio zibethinus HOM05D000814 ORTHO05D005211 9.7e-09 62.8 48 58.3
THA.LOC104814471 Tarenaya hassleriana HOM05D000814 ORTHO05D005211 9.7e-09 62.8 42 64.3
Aa31LG2G12860 Aethionema arabicum HOM05D000814 ORTHO05D005211 1.3e-08 62.4 44 68.2
Gohir.A03G007700 Gossypium hirsutum HOM05D000814 ORTHO05D005211 1.3e-08 62.4 38 71.1
Gorai.003G171900 Gossypium raimondii HOM05D000814 ORTHO05D005211 1.3e-08 62.4 38 71.1
Rhsim11G0023800 Rhododendron simsii HOM05D000814 ORTHO05D005211 1.3e-08 62.4 42 59.5
COL.COLO4_37152 Corchorus olitorius HOM05D000814 ORTHO05D005211 2.2e-08 61.6 42 64.3
Sabra01G0134500 Salix brachista HOM05D000814 ORTHO05D005211 2.2e-08 61.6 42 66.7
Thecc.03G249400 Theobroma cacao HOM05D000814 ORTHO05D005211 2.2e-08 61.6 42 64.3
Gohir.D03G163300 Gossypium hirsutum HOM05D000814 ORTHO05D005211 2.8e-08 61.2 38 68.4
RcHm_v2.0_Chr7g0203601 Rosa chinensis HOM05D000814 ORTHO05D005211 2.8e-08 61.2 53 54.7
Duzib205G0663 Durio zibethinus HOM05D000814 ORTHO05D005211 4.8e-08 60.5 42 61.9
Gohir.A08G169200 Gossypium hirsutum HOM05D000814 ORTHO05D005211 4.8e-08 60.5 39 66.7
Gohir.D08G187600 Gossypium hirsutum HOM05D000814 ORTHO05D005211 4.8e-08 60.5 39 66.7
Gorai.004G197300 Gossypium raimondii HOM05D000814 ORTHO05D005211 4.8e-08 60.5 39 66.7
Potri.001G156700 Populus trichocarpa HOM05D000814 ORTHO05D005211 4.8e-08 60.5 42 64.3
vmacro00194 Vaccinium macrocarpon HOM05D000814 ORTHO05D005211 4.8e-08 60.5 42 59.5
Cfa012735 Carpinus fangiana HOM05D000814 ORTHO05D005211 6.3e-08 60.1 42 59.5
Ciclev10020521m.g Citrus clementina HOM05D000814 ORTHO05D005211 8.2e-08 59.7 42 59.5
Duzib068G1367 Durio zibethinus HOM05D000814 ORTHO05D005211 8.2e-08 59.7 42 61.9
THA.LOC104812807 Tarenaya hassleriana HOM05D000814 ORTHO05D005211 1.1e-07 59.3 43 55.8
Atru.chr9.1292 Acer truncatum HOM05D000814 ORTHO05D005211 1.4e-07 58.9 48 54.2
Cpa.g.sc29.175 Carica papaya HOM05D000814 ORTHO05D005211 1.8e-07 58.5 42 57.1
Potri.003G077900 Populus trichocarpa HOM05D000814 ORTHO05D005211 1.8e-07 58.5 42 59.5
QL12p011702 Quercus lobata HOM05D000814 ORTHO05D005211 1.8e-07 58.5 41 56.1
Aa31sc265G40 Aethionema arabicum HOM05D000814 ORTHO05D005211 2.4e-07 58.2 43 55.8
AT4G17350 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 2.4e-07 58.2 42 57.1
Carub.0007s2406 Capsella rubella HOM05D000814 ORTHO05D005211 2.4e-07 58.2 42 57.1
CARHR223960 Cardamine hirsuta HOM05D000814 ORTHO05D005211 2.4e-07 58.2 42 57.1
Manes.02G040900 Manihot esculenta HOM05D000814 ORTHO05D005211 2.4e-07 58.2 42 59.5
Sp7g16830 Schrenkiella parvula HOM05D000814 ORTHO05D005211 2.4e-07 58.2 42 57.1
Actinidia14417 Actinidia chinensis HOM05D000814 ORTHO05D005211 3.1e-07 57.8 42 57.1
BcaC09g50465 Brassica carinata HOM05D000814 ORTHO05D005211 3.1e-07 57.8 42 57.1
BcaNung00099 Brassica carinata HOM05D000814 ORTHO05D005211 3.1e-07 57.8 44 54.5
C01p25120 Brassica napus HOM05D000814 ORTHO05D005211 3.1e-07 57.8 42 57.1
BolC1t02464H Brassica oleracea HOM05D000814 ORTHO05D005211 3.1e-07 57.8 42 57.1
Dinv39158 Davidia involucrata HOM05D000814 ORTHO05D005211 3.1e-07 57.8 42 52.4
BcaC06g33543 Brassica carinata HOM05D000814 ORTHO05D005211 4.1e-07 57.4 42 54.8
Lalb_Chr16g0386761 Lupinus albus HOM05D000814 ORTHO05D005211 4.1e-07 57.4 42 59.5
Manes.01G081800 Manihot esculenta HOM05D000814 ORTHO05D005211 4.1e-07 57.4 42 57.1
Prupe.5G067500 Prunus persica HOM05D000814 ORTHO05D005211 4.1e-07 57.4 42 57.1
Aa31LG6G90 Aethionema arabicum HOM05D000814 ORTHO05D005211 5.3e-07 57.0 42 54.8
AL7G37360 Arabidopsis lyrata HOM05D000814 ORTHO05D005211 5.3e-07 57.0 42 54.8
A01p20020 Brassica napus HOM05D000814 ORTHO05D005211 5.3e-07 57.0 42 54.8
BraA01t01925Z Brassica rapa HOM05D000814 ORTHO05D005211 5.3e-07 57.0 42 54.8
Thhalv10025351m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 5.3e-07 57.0 42 54.8
HanXRQChr17g0549341 Helianthus annuus HOM05D000814 ORTHO05D005211 5.3e-07 57.0 43 55.8
Hund11603 Selenicereus undatus HOM05D000814 ORTHO05D005211 5.3e-07 57.0 43 51.2
BcaC06g34253 Brassica carinata HOM05D000814 ORTHO05D005211 6.9e-07 56.6 42 57.1
A06p45090 Brassica napus HOM05D000814 ORTHO05D005211 6.9e-07 56.6 42 54.8
BraA06t27378Z Brassica rapa HOM05D000814 ORTHO05D005211 6.9e-07 56.6 42 57.1
Oeu020435.1 Olea europaea HOM05D000814 ORTHO05D005211 6.9e-07 56.6 41 56.1
BcaC06g31387 Brassica carinata HOM05D000814 ORTHO05D005211 9.0e-07 56.2 42 54.8
Hma1.2p1_1136F.1_g260500 Hydrangea macrophylla HOM05D000814 ORTHO05D005211 9.0e-07 56.2 42 52.4
MELO3C005525.2 Cucumis melo HOM05D000814 ORTHO05D005211 1.2e-06 55.8 41 53.7
PGR031G1372 Punica granatum HOM05D000814 ORTHO05D005211 1.2e-06 55.8 42 52.4
Sed0013197 Sechium edule HOM05D000814 ORTHO05D005211 1.2e-06 55.8 41 53.7
EL10Ac5g12380 Beta vulgaris HOM05D000814 ORTHO05D005211 1.5e-06 55.5 43 48.8
BcaNung03467 Brassica carinata HOM05D000814 ORTHO05D005211 1.5e-06 55.5 42 54.8
C07p31060 Brassica napus HOM05D000814 ORTHO05D005211 1.5e-06 55.5 42 54.8
C07p48710 Brassica napus HOM05D000814 ORTHO05D005211 1.5e-06 55.5 42 54.8
BolC7t43650H Brassica oleracea HOM05D000814 ORTHO05D005211 1.5e-06 55.5 42 54.8
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 1.5e-06 55.5 42 54.8
BraA03t14129Z Brassica rapa HOM05D006567 ORTHO05D009430 1.5e-06 55.5 42 54.8
CSS0027660 Camellia sinensis var. sinensis HOM05D000814 ORTHO05D005211 1.5e-06 55.5 42 54.8
CSS0045982 Camellia sinensis var. sinensis HOM05D000814 ORTHO05D005211 1.5e-06 55.5 42 54.8
arahy.Tifrunner.gnm1.ann1.2V173I Arachis hypogaea HOM05D000814 ORTHO05D005211 2.0e-06 55.1 39 61.5
A03p50390 Brassica napus HOM05D006567 ORTHO05D009430 2.0e-06 55.1 42 54.8
Hund14569 Selenicereus undatus HOM05D000814 ORTHO05D005211 2.0e-06 55.1 43 51.2
Sabra03G0048300 Salix brachista HOM05D000814 ORTHO05D005211 2.6e-06 54.7 42 57.1
CANSAT21G0925 Cannabis sativa HOM05D000814 ORTHO05D005211 3.4e-06 54.3 42 52.4
CsaV3_5G004300 Cucumis sativus L. HOM05D000814 ORTHO05D005211 3.4e-06 54.3 41 51.2
Sp2g12150 Schrenkiella parvula HOM05D000814 ORTHO05D005211 3.4e-06 54.3 42 54.8
TAR375G0084 Trochodendron aralioides HOM05D000814 ORTHO05D005211 3.4e-06 54.3 40 55.0
arahy.Tifrunner.gnm1.ann1.EJ5RI6 Arachis hypogaea HOM05D000814 ORTHO05D005211 4.5e-06 53.9 39 59.0
Sed0021303 Sechium edule HOM05D000814 ORTHO05D005211 4.5e-06 53.9 41 51.2
VMungo1215G2706 Vigna mungo HOM05D000814 ORTHO05D005211 4.5e-06 53.9 42 54.8
FvH4_5g19120 Fragaria vesca HOM05D000814 ORTHO05D005211 5.9e-06 53.5 53 47.2
FAN04G0530 Fragaria x ananassa HOM05D000814 ORTHO05D005211 5.9e-06 53.5 53 47.2
FAN13G2837 Fragaria x ananassa HOM05D000814 ORTHO05D005211 5.9e-06 53.5 53 47.2
FAN18G3684 Fragaria x ananassa HOM05D000814 ORTHO05D005211 5.9e-06 53.5 53 47.2
Glyma.01G207950 Glycine max HOM05D000814 ORTHO05D005211 5.9e-06 53.5 42 54.8
MD06G1056800 Malus domestica HOM05D000814 ORTHO05D005211 5.9e-06 53.5 42 47.6
Actinidia28208 Actinidia chinensis HOM05D000814 ORTHO05D005211 7.7e-06 53.1 36 61.1
AUR62007101 Chenopodium quinoa HOM05D000814 ORTHO05D005211 7.7e-06 53.1 43 48.8
AUR62019964 Chenopodium quinoa HOM05D000814 ORTHO05D005211 7.7e-06 53.1 43 48.8
ClCG01G004130 Citrullus lanatus HOM05D000814 ORTHO05D005211 7.7e-06 53.1 41 51.2
Cc08_g12270 Coffea canephora HOM05D000814 ORTHO05D005211 7.7e-06 53.1 42 50.0
ECA233G5265 Erigeron canadensis HOM05D000814 ORTHO05D005211 7.7e-06 53.1 50 48.0
Glyma.11G034400 Glycine max HOM05D000814 ORTHO05D005211 7.7e-06 53.1 42 52.4
Lalb_Chr16g0379521 Lupinus albus HOM05D000814 ORTHO05D005211 7.7e-06 53.1 42 54.8
SalBow6G5366 Salvia bowleyana HOM05D000814 ORTHO05D005211 7.7e-06 53.1 41 56.1
TWI60G1470 Tripterygium wilfordii HOM05D000814 ORTHO05D005211 7.7e-06 53.1 39 56.4
Thhalv10000905m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 1.0e-05 52.8 42 52.4
Phvul.002G057300 Phaseolus vulgaris HOM05D000814 ORTHO05D005211 1.0e-05 52.8 42 54.8


User provided reference genes

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